BAC Information

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BAC

Clone NameB6Ng01-003C19
Chromosome3 (Build37)
Map Location 143,618,894 - 143,782,081
singlet/doubletdoublet
Overlap geneLOC100039952
Upstream geneLOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809, LOC100039938
Downstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C19.bB6Ng01-003C19.g
ACCDH840967DH840968
length5711,146
definitionDH840967|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C19, 5' end.DH840968|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,618,894 - 143,619,470)(143,780,946 - 143,782,081)
sequence
tttgaggaacctaagatgtgctgctacagaaaaaaaaaatgtgtttctga
gtagtgagaagtgacacttgggaacgaggatacactagaaggggattgga
cactagaagggggttgggcgtgtccacatgatgttccaccaagatctgct
tagtcccctgggattggggcagagagtgaggagacgctacagtgggtagt
cggttacagagctagggaggcgactgggggattggacatagaggacagga
gggagagggaggatctggaagactgtacgatggagactcttcacagtgac
ctttcagccatatacagcctgtctgtctgctcttgggtagagtctaagtg
aggctatggtttttttttttttttaatctattaaacaagttgaacttctt
tcatcatagcattaatagcattgtattacagatctctattaatttgtctt
ctcccagactttaaaattccaaagagcaagagtgtttgtcctctctcctc
tcctccaccttttctttttcacctctcctttatttactcttccccttccc
tcttcccttcccctcccctcc
gaattccatggattagcacagtgagaccttcattgcagaagtgcctcttt
ctgtcaggtaaagagaacttggcaatcaaaggattaaagagaaagcactg
actgctaatgctgagtttggggctccatcaaggactgcgctatccttccc
taaaacaataaactcagatcactggtttgtttggcttcacagttggaaac
tgtggtttttaatataacctcacatttgaaatatttcagtcctgtttttc
ttgagcattgggtaggccttgattctgacagactaactaaatctcatcac
accctcttcactgaacaatgcaagctgatttcctaagtgtgtccacattt
tatgctcccatagatttcagtggctagaccagctagttgtatggacttta
catacaatctcatttgctggtgggtcatctaagtcagtgataacagcatc
tgcctcgtgactgtgcccctaaaatctaaggagagaaaaagagagaagaa
ttatttaaatctaaacagtgttcagactaacagttgaaacatccttttag
ttataaaagtaattcacgtttattttaaaaggttcaaacaatagaagatt
aacaactgagaatcgcttctccctagtttgaattttactgtcagatgtga
ttattatcattattattattatcattattatttcattttacacacataca
cacacacacacacacacacacacacacacacacacacacacccttatagg
tacatgtccatacatttactagttgctttcatcgtaattgaaatcatacc
tgactttccttgtttaatctgttcttatgcttagcagtctgctggtcatg
gggtacacataactgcattttgtaacctacccagctacatagatatacca
tacatactttcgtactttctcacatactttcttagtgatgaatattcaga
gttatttccgtgcatgggctataaaatgctggtttgcagtgagcttacat
gtttgcctagagtttcagtattttcctagtatcagggtttacgaataatt
tgataggtttctggcaagccaggttctattcccaagtattttttataaat
agccattccccaccggaaattccctcaagtacagaaggcctattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143618894_143619470
seq2: B6Ng01-003C19.b_46_622

seq1  GAATTCTTTGAGGAACCTAAGATGTGCTGCTACAGAAAAAAAAAATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGGAACCTAAGATGTGCTGCTACAGAAAAAAAAAATGTGT  50

seq1  TTCTGAGTAGTGAGAAGTGACACTTGGGAACGAGGATACACTAGAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTAGTGAGAAGTGACACTTGGGAACGAGGATACACTAGAAGGGG  100

seq1  ATTGGACACTAGAAGGGGGTTGGGCGTGTCCACATGATGTTCCACCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACACTAGAAGGGGGTTGGGCGTGTCCACATGATGTTCCACCAAGA  150

seq1  TCTGCTTAGTCCCCTGGGATTGGGGCAGAGAGTGAGGAGACGCTACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTAGTCCCCTGGGATTGGGGCAGAGAGTGAGGAGACGCTACAGTG  200

seq1  GGTAGTCGGTTACAGAGCTAGGGAGGCGACTGGGGGATTGGACATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCGGTTACAGAGCTAGGGAGGCGACTGGGGGATTGGACATAGAGG  250

seq1  ACAGGAGGGAGAGGGAGGATCTGGAAGACTGTACGATGGAGACTCTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGGAGAGGGAGGATCTGGAAGACTGTACGATGGAGACTCTTCAC  300

seq1  AGTGACCTTTCAGCCATATACAGCCTGTCTGTCTGCTCTTGGGTAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTTTCAGCCATATACAGCCTGTCTGTCTGCTCTTGGGTAGAGTC  350

seq1  TAAGTGAGGCTATGGTTTTTTTTTTTTTTTAATCTATTAAACAAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGGCTATGGTTTTTTTTTTTTTTTAATCTATTAAACAAGTTGAA  400

seq1  CTTCTTTCATCATAGCATTAATAGCATTGTATTACAGATCTCTATTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCATCATAGCATTAATAGCATTGTATTACAGATCTCTATTAATT  450

seq1  TGTCTTCTCCCAGACTTTAAAATTCCAAAGAGCAAGAGTGTTTGTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCCCAGACTTTAAAATTCCAAAGAGCAAGAGTGTTTGTCCTCT  500

seq1  CTCCTCTCCTCCACCTTTTCTTTTTCACCTCTCCTTTATTTACTCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTCCACCTTTTCTTTTTCACCTCTCCTTTATTTACTCTTCCC  550

seq1  CTTCCCTCTTCCCTTCCCCTCCCCTCC  577
      |||||||||||||||||||||||||||
seq2  CTTCCCTCTTCCCTTCCCCTCCCCTCC  577

seq1: chr3_143780946_143782081
seq2: B6Ng01-003C19.g_67_1212 (reverse)

seq1  CTAATAG--CCTCTGTACCTTGAGGG-ATGTCCG--TGGGAAT-GCTATT  44
      |||||||  | |||||| |||||||| || ||||   |||||| ||||||
seq2  CTAATAGGCCTTCTGTA-CTTGAGGGAATTTCCGGTGGGGAATGGCTATT  49

seq1  TAT--AAAATACTTGTG-ATAGAACCTGGCTTG-CAGAAA-CTATCAAA-  88
      |||  |||||||||| | ||||||||||||||| |||||| |||||||| 
seq2  TATAAAAAATACTTGGGAATAGAACCTGGCTTGCCAGAAACCTATCAAAT  99

seq1  TAATCGTAAACCCTGATACTAGGAAAATACTGAAACTCTAGGCAAACATG  138
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGTAAACCCTGATACTAGGAAAATACTGAAACTCTAGGCAAACATG  149

seq1  TAAGCTCACTGCAAACCAGCATTTTATAGCCCATGCACGGAAATTAACTC  188
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAGCTCACTGCAAACCAGCATTTTATAGCCCATGCACGGAAA-TAACTC  198

seq1  TGAATATTCATCACTAAGAAAGTATGTGAGAAAGTACGAAAGTATGTATG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCATCACTAAGAAAGTATGTGAGAAAGTACGAAAGTATGTATG  248

seq1  GTATATCTATGTAGCTGGGTAGGTTACAAAATGCAGTTATGTGTACCCCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTATGTAGCTGGGTAGGTTACAAAATGCAGTTATGTGTACCCCA  298

seq1  TGACCAGCAGACTGCTAAGCATAAGAACAGATTAAACAAGGAAAGTCAGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCAGACTGCTAAGCATAAGAACAGATTAAACAAGGAAAGTCAGG  348

seq1  TATGATTTCAATTACGATGAAAGCAACTAGTAAATGTATGGACATGTACC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTCAATTACGATGAAAGCAACTAGTAAATGTATGGACATGTACC  398

seq1  TATAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  448

seq1  TATGTGTGTAAAATGAAATAATAATGATAATAATAATAATGATAATAATC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTAAAATGAAATAATAATGATAATAATAATAATGATAATAATC  498

seq1  ACATCTGACAGTAAAATTCAAACTAGGGAGAAGCGATTCTCAGTTGTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGACAGTAAAATTCAAACTAGGGAGAAGCGATTCTCAGTTGTTAA  548

seq1  TCTTCTATTGTTTGAACCTTTTAAAATAAACGTGAATTACTTTTATAACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATTGTTTGAACCTTTTAAAATAAACGTGAATTACTTTTATAACT  598

seq1  AAAAGGATGTTTCAACTGTTAGTCTGAACACTGTTTAGATTTAAATAATT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGTTTCAACTGTTAGTCTGAACACTGTTTAGATTTAAATAATT  648

seq1  CTTCTCTCTTTTTCTCTCCTTAGATTTTAGGGGCACAGTCACGAGGCAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTTTTTCTCTCCTTAGATTTTAGGGGCACAGTCACGAGGCAGA  698

seq1  TGCTGTTATCACTGACTTAGATGACCCACCAGCAAATGAGATTGTATGTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATCACTGACTTAGATGACCCACCAGCAAATGAGATTGTATGTA  748

seq1  AAGTCCATACAACTAGCTGGTCTAGCCACTGAAATCTATGGGAGCATAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATACAACTAGCTGGTCTAGCCACTGAAATCTATGGGAGCATAAA  798

seq1  ATGTGGACACACTTAGGAAATCAGCTTGCATTGTTCAGTGAAGAGGGTGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACACACTTAGGAAATCAGCTTGCATTGTTCAGTGAAGAGGGTGT  848

seq1  GATGAGATTTAGTTAGTCTGTCAGAATCAAGGCCTACCCAATGCTCAAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTTAGTTAGTCTGTCAGAATCAAGGCCTACCCAATGCTCAAGA  898

seq1  AAAACAGGACTGAAATATTTCAAATGTGAGGTTATATTAAAAACCACAGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGACTGAAATATTTCAAATGTGAGGTTATATTAAAAACCACAGT  948

seq1  TTCCAACTGTGAAGCCAAACAAACCAGTGATCTGAGTTTATTGTTTTAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTGTGAAGCCAAACAAACCAGTGATCTGAGTTTATTGTTTTAGG  998

seq1  GAAGGATAGCGCAGTCCTTGATGGAGCCCCAAACTCAGCATTAGCAGTCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATAGCGCAGTCCTTGATGGAGCCCCAAACTCAGCATTAGCAGTCA  1048

seq1  GTGCTTTCTCTTTAATCCTTTGATTGCCAAGTTCTCTTTACCTGACAGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTCTTTAATCCTTTGATTGCCAAGTTCTCTTTACCTGACAGAA  1098

seq1  AGAGGCACTTCTGCAATGAAGGTCTCACTGTGCTAATCCATGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACTTCTGCAATGAAGGTCTCACTGTGCTAATCCATGGAATTC  1146