BAC Information

Click to search

BAC

Clone NameB6Ng01-003D01
Chromosome3 (Build37)
Map Location 71,079,946 - 71,081,042
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneEG667377, LOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D01.bB6Ng01-003D01.g
ACCDH840979DH840980
length1,1511,077
definitionDH840979|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D01, 5' end.DH840980|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagttataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccgtagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatta
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagagaagtagccaagagctaaagggatctgcaccctatag
tgaacacatatgactaccagtacccggagctctgactctagctgcatatt
atatcaaagatgctagtcgcatccctgaatgagccattggacttgcaaac
tttattgccccagtacagggacatcacgcgcaaagggggaatgtgtggcc
a
gaattcatttaaatatacaaattgtgttaatgagataggacaaattttga
tattttttcagtaatgtgatttgtaaaaagaaacaaattgaatatctgag
catatcattagctaaactaaaaacataaaggggaatattattcaaagaat
attatacaatgaaatcttgtatctatttgatataataacccatagcaaaa
taggaattattgtaaattgctgaaacagatatcttaaaatggtgaatctt
tcttttacacccagagatgtactggaatgctctagtatcattctttgcat
taagcctgaaacttgagattgtggaataaagaagacagtaaagttccatg
actcagcaaggtcagaatagaggataccatgcctgttaagaatctcatga
attctgtcctgtggtcagggtggtgagctaagagaggtattcttacaggt
ttttgggaaacttaagagagagttaatgtcatatcctggagggtcttatc
tcactgtgatccttgaatcctggaaacctgggaaggacacacataatatc
tcactgaaggactgatgttttcttttattgctttagcatagcttaagatg
aatattgttcttagagtttggcctgatacattgaagtatccttttttatt
cacatgatttacctgcccatctgattttttttttttttttaatgattgag
ccttttgatactaagcctccaatcaggtcaaagaaaatgctttttctaaa
gtgtctccataaaggcaaggtcaaggttgttttaatgttaggataagtga
tttgcgatattcccatgttagaaaaaaaaaaaactactctattgaaattc
taataaaattaatgataagttgaagagaaactattgtaaatcaaatatgt
catttattgcttgatggtttgtttttttcccagacttattgtgtgatcac
catagagctttccctagttttcccatctgttttgtgagagtagtatgatg
tgttgttataacctatcatgtgggaagtcacataccaaatgatgctttca
gtctaggagggctcagcagttagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71079946_71081042
seq2: B6Ng01-003D01.g_67_1143

seq1  GAATTCATTTAAATATACAAATTGTGTTAATGAGATAGGACAAATTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAATATACAAATTGTGTTAATGAGATAGGACAAATTTTGA  50

seq1  TATTTTTTCAGTAATGTGATTTGTAAAAAGAAACAAATTGAATATCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAGTAATGTGATTTGTAAAAAGAAACAAATTGAATATCTGAG  100

seq1  CATATCATTAGCTAAACTAAAAACATAAAGGGGAATATTATTCAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATTAGCTAAACTAAAAACATAAAGGGGAATATTATTCAAAGAAT  150

seq1  ATTATACAATGAAATCTTGTATCTATTTGATATAATAACCCATAGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAATGAAATCTTGTATCTATTTGATATAATAACCCATAGCAAAA  200

seq1  TAGGAATTATTGTAAATTGCTGAAACAGATATCTTAAAATGGTGAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTATTGTAAATTGCTGAAACAGATATCTTAAAATGGTGAATCTT  250

seq1  TCTTTTACACCCAGAGATGTACTGGAATGCTCTAGTATCATTCTTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACACCCAGAGATGTACTGGAATGCTCTAGTATCATTCTTTGCAT  300

seq1  TAAGCCTGAAACTTGAGATTGTGGAATAAAGAAGACAGTAAAGTTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGAAACTTGAGATTGTGGAATAAAGAAGACAGTAAAGTTCCATG  350

seq1  ACTCAGCAAGGTCAGAATAGAGGATACCATGCCTGTTAAGAATCTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAGGTCAGAATAGAGGATACCATGCCTGTTAAGAATCTCATGA  400

seq1  ATTCTGTCCTGTGGTCAGGGTGGTGAGCTAAGAGAGGTATTCTTACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCTGTGGTCAGGGTGGTGAGCTAAGAGAGGTATTCTTACAGGT  450

seq1  TTTTGGGAAACTTAAGAGAGAGTTAATGTCATATCCTGGAGGGTCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAAACTTAAGAGAGAGTTAATGTCATATCCTGGAGGGTCTTATC  500

seq1  TCACTGTGATCCTTGAATCCTGGAAACCTGGGAAGGACACACATAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGATCCTTGAATCCTGGAAACCTGGGAAGGACACACATAATATC  550

seq1  TCACTGAAGGACTGATGTTTTCTTTTATTGCTTTAGCATAGCTTAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGGACTGATGTTTTCTTTTATTGCTTTAGCATAGCTTAAGATG  600

seq1  AATATTGTTCTTAGAGTTTGGCCTGATACATTGAAGTATCCTTTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTCTTAGAGTTTGGCCTGATACATTGAAGTATCCTTTTTTATT  650

seq1  CACATGATTTACCTGCCCATCTGATTTTTTTTTTTTTTTTAATGATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATTTACCTGCCCATCTGATTTTTTTTTTTTTTTTAATGATTGAG  700

seq1  CCTTTTGATACTAAGCCTCCAATCAGGTCAAAGAAAATGCTTTTCCTAAA  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTTTGATACTAAGCCTCCAATCAGGTCAAAGAAAATGCTTTTTCTAAA  750

seq1  GTGTCTCCATAAAGGCAAGGTCAAGGTTGTTTTAATGTTAGGATAAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCATAAAGGCAAGGTCAAGGTTGTTTTAATGTTAGGATAAGTGA  800

seq1  TTTGCGATATTCCCATGTTAGAAAAAAAAAAAACTACTCTATTGAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGATATTCCCATGTTAGAAAAAAAAAAAACTACTCTATTGAAATTC  850

seq1  TAATAAAATTAATGATAAGTTGAAGAGAAACTATTGTAAATCAAATATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATTAATGATAAGTTGAAGAGAAACTATTGTAAATCAAATATGT  900

seq1  CATTTATTGCTTGATGGTTTGTTTTTTTCCCAGACTTATTGTTGTGGATC  950
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  CATTTATTGCTTGATGGTTTGTTTTTTTCCCAGACTTATTG-TGT-GATC  948

seq1  ACCCATAGAGCTTTCCCCTTAGTTTTCCCATCTGTTTTTGTTGAGAAGTA  1000
      | |||||||||||||||  |||||||||||||||||||   |||| ||||
seq2  A-CCATAGAGCTTTCCC--TAGTTTTCCCATCTGTTTT--GTGAG-AGTA  992

seq1  GTATTGATGTGTTTGTTATAAACCTAATCATGTGGGAAAAGTCACATTAA  1050
      ||| ||||||| ||||||| ||||| ||||||||||  |||||||| || 
seq2  GTA-TGATGTG-TTGTTAT-AACCT-ATCATGTGGG--AAGTCACA-TAC  1035

seq1  CAAATGATGCTCTCCAGTCTTAGGAGGTGCTCAGGCAGTTAAGAGTT  1097
      ||||||||||| | ||||| ||||||| ||||| |||||| ||||||
seq2  CAAATGATGCT-TTCAGTC-TAGGAGG-GCTCA-GCAGTT-AGAGTT  1077