BAC Information

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BAC

Clone NameB6Ng01-003E14
Chromosome3 (Build37)
Map Location 126,297,364 - 126,426,848
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E14.bB6Ng01-003E14.g
ACCDH841048DH841049
length1,1141,069
definitionDH841048|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E14, 5' end.DH841049|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,297,364 - 126,298,500)(126,425,765 - 126,426,848)
sequence
gaattctttaataaaagaaacattttaatgagaatacaatatagatcaaa
caacagagcatgtgtagattaaacattatttgtacaaagttcttgtctac
aaatactaacttgataatgatacatcaaaagcagttacttttttattata
cttaaaattattctaaccatttacagttaccattattttaaacaactgag
ttaaatactgtaattatgtagacttcactgcattggtatttaagaaacaa
ttttcttcctagttgtaaaaaatttattatgctcatttttaaaattttat
ttttgttttcacttttggatttggaaaagaatattaagttatgccattat
aaccgagagccatatatttaagctacatattaaaaatgtttagttaaggc
caaattatatcttcctttcaatttttggcttggttattaatacttaaaca
ctactatttctccttttaactttttagtttcatcttcctttctttgtcac
tacatttataccaagtaatccttatcttttattgccaggatttaagatcc
aagctcatttcagttttgttattaaaaatgttcaaatttagccaggcatg
gtatttcacacctttagtcacaggctggggaggcagaggcaggtggatct
ctcagtttgaggctcagcctggtttgcatagtgagttccatgccatttaa
gagagacacactgagactattccaatcgaataaaaatgttcaaatttaag
gacataaaaaacaaaatttgcttttaaaaacaaaaaggaatcaagctata
taaaaaccacagaggaacttcaataagcttccaagggtgtcccacaatga
caactgaacagcagaggcccccaggtaggaacaatacgagacaagcggga
cgtgtgctgatcccacgtgcttggcaacgtccaaaatcagcactacggat
ctagtgcgtgggcagaaatcaattgatgtagtaaattgaagggaaattat
agcaaaccgcataaatgacattttcatgggcaaacatgcagacattgatg
atgactaaattcaaagtatttcttgtgtgagtggaaggctatgaacgatg
agtaatatttgcaa
gaattcctcagtattcagcgtccttcggagtacacccctctgagctggta
gttagctctaaatgattagcacacacgaagggagcagagccttcataagc
tctatatatggcagctgacctctggaaaaccacccgctgtgctaaaagaa
aggtgtggtgagactactaaaagactagaggccaagtggagagataaccc
agagaaagagaggtcaccctgacattccatccctagcagagctcagagct
aaatgtaaccacttgagtgagctcacctccaactgagcagaaaagccatc
tgatggagcagtcggctcacaaccatggcaaataactagggatatgattt
cctaccactgagtctgggatgcagatggcaaggcaacaacagacaaatgt
atcagaaagggttaatctgaacggcataactgtcctcaaattgttctttt
tccacatcgcaagcaatttctagtgaaaaatattaagcttggcctagaaa
accggcatgaactagtgtgactctctgaagctaagcatggcagggtgaca
tgctgccaatgttaccacaatactaataaaggatttcacagcgaacagat
tgtattgcattctcataagcaatgtttgtcagctctgagtcacagttctg
attataaatgaggaagattttacgttttcagctttgttgtggttgcaagg
atggagagagttggattccgttctcatcctgggatgtaaaaatggcagct
tgtaagtccgagcctccttatattcttctcagtggttaattataattcac
agctagagccagtcccagccaacttaggtcatgcaacatgccaagccttc
cccacaggagaggtgccaacactggattcatttgtgaattgttaaaattg
tgctagtagagaatattttaacagtcaatggcagcacgctggagaaacgg
cagctcagtcattcctaccggggcttctacaagctgttcattttgagaga
ttttcaaacagaaaacaggaccactgacaacaattatttggagtcgactg
gcatgtgagtatgcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126297364_126298500
seq2: B6Ng01-003E14.b_43_1156

seq1  GAATTCTTTAAATAAAAGAAACATTTTAATGAGAATACAATATAGATCAA  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTT-AATAAAAGAAACATTTTAATGAGAATACAATATAGATCAA  49

seq1  ACAACAGAGCATGTGTAGATTAAACATTATTTGTACAAAGTTCTTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGCATGTGTAGATTAAACATTATTTGTACAAAGTTCTTGTCTA  99

seq1  CAAATACTAACTTGATAATGATACATCAAAAGCAGTTACTTTTTTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTAACTTGATAATGATACATCAAAAGCAGTTACTTTTTTATTAT  149

seq1  ACTTAAAATTATTCTAACCATTTACAGTTACCATTATTTTAAACAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAATTATTCTAACCATTTACAGTTACCATTATTTTAAACAACTGA  199

seq1  GTTAAATACTGTAATTATGTAGACTTCACTGCATTGGTATTTAAGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATACTGTAATTATGTAGACTTCACTGCATTGGTATTTAAGAAACA  249

seq1  ATTTTCTTCCTAGTTGTAAAAAATTTATTATGCTCATTTTTAAAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCCTAGTTGTAAAAAATTTATTATGCTCATTTTTAAAATTTTA  299

seq1  TTTTTGTTTTCACTTTTGGATTTGGAAAAGAATATTAAGTTATGCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTCACTTTTGGATTTGGAAAAGAATATTAAGTTATGCCATTA  349

seq1  TAACCGAGAGCCATATATTTAAGCTACATATTAAAAATGTTTAGTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGAGAGCCATATATTTAAGCTACATATTAAAAATGTTTAGTTAAGG  399

seq1  CCAAATTATATCTTCCTTTCAATTTTTGGCTTGGTTATTAATACTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTATATCTTCCTTTCAATTTTTGGCTTGGTTATTAATACTTAAAC  449

seq1  ACTACTATTTCTCCTTTTAACTTTTTAGTTTCATCTTCCTTTCTTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATTTCTCCTTTTAACTTTTTAGTTTCATCTTCCTTTCTTTGTCA  499

seq1  CTACATTTATACCAAGTAATCCTTATCTTTTATTGCCAGGATTTAAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTATACCAAGTAATCCTTATCTTTTATTGCCAGGATTTAAGATC  549

seq1  CAAGCTCATTTCAGTTTTGTTATTAAAAATGTTCAAATTTAGCCAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCATTTCAGTTTTGTTATTAAAAATGTTCAAATTTAGCCAGGCAT  599

seq1  GGTATTTCACACCTTTAGTCACAGGCTGGGGAGGCAGAGGCAGGTGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCACACCTTTAGTCACAGGCTGGGGAGGCAGAGGCAGGTGGATC  649

seq1  TCTCAGTTTGAGGCTCAGCCTGGTTTGCATAGTGAGTTCCATGCCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTGAGGCTCAGCCTGGTTTGCATAGTGAGTTCCATGCCATTTA  699

seq1  AGAGAGACACACTGAGACTATTCCAATCAAATAAAAATGTTCAAATTTAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAGACACACTGAGACTATTCCAATCGAATAAAAATGTTCAAATTTAA  749

seq1  GGACATAAAAAACAAAATTTGCTTTTAAAAACAAAAAGGAATCAAAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGACATAAAAAACAAAATTTGCTTTTAAAAACAAAAAGGAATC-AAGCTA  798

seq1  TATAAAAACCACAGAGGAACTTCAATAAGCTTCCAAGGGTGTCCCACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACCACAGAGGAACTTCAATAAGCTTCCAAGGGTGTCCCACAAT  848

seq1  GACAACTGAACAGCAGAGGCCCCCAGGTAGGAACAATACAAGACAAAGCG  900
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  GACAACTGAACAGCAGAGGCCCCCAGGTAGGAACAATACGAGAC-AAGCG  897

seq1  GGACGTGTGCTGATCCCACGTGCTTGGCAACGTCAAAAATCAGCACTAGG  950
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GGACGTGTGCTGATCCCACGTGCTTGGCAACGTCCAAAATCAGCACTACG  947

seq1  AATCTAGTGCGTGGGCAGAATATCAAATGATGTAAGTAAAATTGAAGGGA  1000
       ||||||||||||||||||| ||||| |||||| ||| ||||||||||| 
seq2  GATCTAGTGCGTGGGCAGAA-ATCAATTGATGT-AGT-AAATTGAAGGG-  993

seq1  AAATTATAGTAAAACAGGCCAGTAAATGACATTTTCATGGGCAAAACAAT  1050
      ||||||||| ||| |  ||   |||||||||||||||||||||||   ||
seq2  AAATTATAGCAAACC--GC--ATAAATGACATTTTCATGGGCAAA--CAT  1037

seq1  GCAGACATTGAATGATGACTAAATTCAAAAAGTATTTTCTTGTGTTGAGT  1100
      |||||||||| |||||||||||||||  |||||| ||||||||| |||||
seq2  GCAGACATTG-ATGATGACTAAATTC--AAAGTA-TTTCTTGTG-TGAGT  1082

seq1  GGGAGAGGGCTATTAGAAGTATGAGTAATATTTGCAA  1137
      |   || ||||||  |||  |||||||||||||||||
seq2  G---GAAGGCTAT--GAACGATGAGTAATATTTGCAA  1114

seq1: chr3_126425765_126426848
seq2: B6Ng01-003E14.g_66_1134 (reverse)

seq1  TTTATGCATAACCTTCACCATGGCAGTCGAACTCCCAAATAATTTGTTGT  50
      ||||||||||    ||| |||| |||||| ||| |||||||| |||||| 
seq2  TTTATGCATA---CTCA-CATGCCAGTCG-ACT-CCAAATAA-TTGTTG-  42

seq1  TCAGTGTTCCTGTTTTCTGTTTGAAAATCTCTTCAAAATGAACAGCTTTG  100
      |||||| |||||||||||||||||||||||| ||||||||||||||||  
seq2  TCAGTGGTCCTGTTTTCTGTTTGAAAATCTC-TCAAAATGAACAGCTT--  89

seq1  TTAGAAGGCCCGGTAGGAATGACTGAGCTGCCGTTTTCTCCAGCGTGCTG  150
       |||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGAAGCCCCGGTAGGAATGACTGAGCTGCCG-TTTCTCCAGCGTGCTG  138

seq1  CCATTTGACTGTTAAAAATATTCTTCTACTAGCACAATTTTAACAATTCA  200
      ||| ||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CCA-TTGACTGTT-AAAATATTC-TCTACTAGCACAATTTTAACAATTCA  185

seq1  CAAATGAATCCAGTGTTGGCACCTCTCCTGTGGGGAAGGCTTGGCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATCCAGTGTTGGCACCTCTCCTGTGGGGAAGGCTTGGCATGTT  235

seq1  GCATGACCTAAGTTGGCTGGGACTGGCTCTAGCTGTGAATTATAATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCTAAGTTGGCTGGGACTGGCTCTAGCTGTGAATTATAATTAAC  285

seq1  CACTGAGAAGAATATAAGGAGGCTCGGACTTACAAGCTGCCATTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAAGAATATAAGGAGGCTCGGACTTACAAGCTGCCATTTTTACA  335

seq1  TCCCAGGATGAGAACGGAATCCAACTCTCTCCATCCTTGCAACCACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGATGAGAACGGAATCCAACTCTCTCCATCCTTGCAACCACAACA  385

seq1  AAGCTGAAAACGTAAAATCTTCCTCATTTATAATCAGAACTGTGACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAACGTAAAATCTTCCTCATTTATAATCAGAACTGTGACTCAG  435

seq1  AGCTGACAAACATTGCTTATGAGAATGCAATACAATCTGTTCGCTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAAACATTGCTTATGAGAATGCAATACAATCTGTTCGCTGTGAA  485

seq1  ATCCTTTATTAGTATTGTGGTAACATTGGCAGCATGTCACCCTGCCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATTAGTATTGTGGTAACATTGGCAGCATGTCACCCTGCCATGC  535

seq1  TTAGCTTCAGAGAGTCACACTAGTTCATGCCGGTTTTCTAGGCCAAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCAGAGAGTCACACTAGTTCATGCCGGTTTTCTAGGCCAAGCTT  585

seq1  AATATTTTTCACTAGAAATTGCTTGCGATGTGGAAAAAGAACAATTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCACTAGAAATTGCTTGCGATGTGGAAAAAGAACAATTTGAG  635

seq1  GACAGTTATGCCGTTCAGATTAACCCTTTCTGATACATTTGTCTGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTATGCCGTTCAGATTAACCCTTTCTGATACATTTGTCTGTTGTT  685

seq1  GCCTTGCCATCTGCATCCCAGACTCAGTGGTAGGAAATCATATCCCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCATCTGCATCCCAGACTCAGTGGTAGGAAATCATATCCCTAGT  735

seq1  TATTTGCCATGGTTGTGAGCCGACTGCTCCATCAGATGGCTTTTCTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCATGGTTGTGAGCCGACTGCTCCATCAGATGGCTTTTCTGCTC  785

seq1  AGTTGGAGGTGAGCTCACTCAAGTGGTTACATTTAGCTCTGAGCTCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGTGAGCTCACTCAAGTGGTTACATTTAGCTCTGAGCTCTGCT  835

seq1  AGGGATGGAATGTCAGGGTGACCTCTCTTTCTCTGGGTTATCTCTCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGAATGTCAGGGTGACCTCTCTTTCTCTGGGTTATCTCTCCACT  885

seq1  TGGCCTCTAGTCTTTTAGTAGTCTCACCACACCTTTCTTTTAGCACAGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTAGTCTTTTAGTAGTCTCACCACACCTTTCTTTTAGCACAGCG  935

seq1  GGTGGTTTTCCAGAGGTCAGCTGCCATATATAGAGCTTATGAAGGCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTCCAGAGGTCAGCTGCCATATATAGAGCTTATGAAGGCTCTG  985

seq1  CTCCCTTCGTGTGTGCTAATCATTTAGAGCTAACTACCAGCTCAGAGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCGTGTGTGCTAATCATTTAGAGCTAACTACCAGCTCAGAGGGG  1035

seq1  TGTACTCCGAAGGACGCTGAATACTGAGGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TGTACTCCGAAGGACGCTGAATACTGAGGAATTC  1069