BAC Information

Click to search

BAC

Clone NameB6Ng01-003M09
Chromosome3 (Build37)
Map Location 125,256,937 - 125,454,647
singlet/doubletdoublet
Overlap geneNdst4
Upstream gene1700003H04Rik, LOC668817, LOC668820
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M09.bB6Ng01-003M09.g
ACCDH841380DH841381
length1,142971
definitionDH841380|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M09, 5' end.DH841381|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,256,937 - 125,258,096)(125,454,116 - 125,454,647)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatttgttcgtggcctt
tttgtcttattgacggtgtcttttgctttgctttcctcactctaaaacaa
gacaccttggataaccttgctgcttctttatgagtctattcgcttcattt
tcctagtgttttcctttttactctcgttagtcatgacatgtgttagaagc
tgatgcctggacaaatctatgttttccattaatggaaatgtctgtatggt
tcaacagatttgagtcgtgtcaggatacgtgagcctatgtgccttgacct
ctgatcttccattagtcaagttgaaatgcactgttgtatgagtttgtatt
atataatatgctagagaattataagtttttgtctctactgttcagtaaca
ttcgcctgatctatgttcatcattttagcaatgaagaaaaaaaaagtttc
aaacaaaataaatggaatgaatcctatttgttgttatgcattaacatatg
cttttatatgactaggaaaacatttcccatgcaaaaaattatcatttcca
acaaggagtacagaaaaaaaatgactaagatttgatcaacccgaacattc
ttattgactagagaggggaataagatgcagagttaatataataaagcaga
aaactatgcaaattataagaaaatcatttagaaatactctctgggagatg
aagaaaagaaaagtttggaggcattaaaggttggtttcggctgagagatg
gcatttggacagagctaaggcatgatagagtttcaaagggattggcaata
atggtgggtctcaaagagtgaggaaggcatggacacacacaacaggcaga
cagtggctcagtcaggattacctgctgaagtcaggatagagagatgtatg
tagcctattagagataaaactttcaagatttacaattggaagaaagtaga
cataccagaatgatcatttattggaaatgattattgaatttaccgtgtag
ccagcaattagtcttgcaggtcccttatgagtcatccttaaa
gaattctaatacctgggaagtacagtctcttaattttgtactcctagaca
attaaaaacaaacaaacaaacaaacaaggcaataacacaaacaccatatc
cagcaaggcaaacacaaagtcctcctgctcctaatgggtcttagaagtgt
aattaatcaagctcccaaagaaaccttgtgtagacacactctccaccttg
gctgccctgcacacgtaggaattctctcccaatggttctattggactgtc
cttgatccatgtatcatacatagttctggcatctgtagaatgtaaccttc
acttaaacctaggactcctctttgcagttttacccaacagccacttagaa
cctctgggccacaacattgaccttactacacattgcttggccttctttgt
attgaaactgtggaacaaagctcttaaatctgcacaatctatttctgtaa
aaccattaattacaagatggtgatgccagtcttcaataccagcttattgg
ttgtctgtctcacttgactcacaggtgtgttaatttctgtgtttagacaa
taggaaatcattttgttaaggttgctactttcaaggaccagggagcccct
tcctcttagctttcttcctttaaatgaaggtggatctttacaagatggaa
tgcatgatgggtagagtctgccctatggcttcttttctaggcttttcttc
tatggtctgattttcttaactgtcatggttttttttctcagcagcaacct
gaatgctcccctatcttaaaatttcttctgttgcatggttagtccatcgt
ttttaacttcaactttgattggggtttcaggacacacacagagtgaaacc
agattcttggcaagacatcacagggatggatagcttcgatgccagtttat
cacagcactagccccccacttcttggtctaacttctaactattttttttt
atttttgtttgttgttttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125256937_125258096
seq2: B6Ng01-003M09.b_46_1187

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100

seq1  TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATTTGTTCGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATTTGTTCGTGGCCTT  150

seq1  TTTGTCTTATTGACGGTGTCTTTTGCTTTGCTTTCCTCACTCTAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACGGTGTCTTTTGCTTTGCTTTCCTCACTCTAAAACAA  200

seq1  GACACCTTGGATAACCTTGCTGCTTCTTTATGAGTCTATTCGCTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTGGATAACCTTGCTGCTTCTTTATGAGTCTATTCGCTTCATTT  250

seq1  TCCTAGTGTTTTCCTTTTTACTCTCGTTAGTCATGACATGTGTTAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTTTTCCTTTTTACTCTCGTTAGTCATGACATGTGTTAGAAGC  300

seq1  TGATGCCTGGACAAATCTATGTTTTCCATTAATGGAAATGTCTGTATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGGACAAATCTATGTTTTCCATTAATGGAAATGTCTGTATGGT  350

seq1  TCAACAGATTTGAGTCGTGTCAGGATACGTGAGCCTATGTGCCTTGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGATTTGAGTCGTGTCAGGATACGTGAGCCTATGTGCCTTGACCT  400

seq1  CTGATCTTCCATTAGTCAAGTTGAAATGCACTGTTGTATGAGTTTGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTCCATTAGTCAAGTTGAAATGCACTGTTGTATGAGTTTGTATT  450

seq1  ATATAATATGCTAGAGAATTATAAGTTTTTGTCTCTACTGTTCAGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATGCTAGAGAATTATAAGTTTTTGTCTCTACTGTTCAGTAACA  500

seq1  TTCGCCTGATCTATGTTCATCATTTTAGCAATGAAGAAAAAAAAAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTGATCTATGTTCATCATTTTAGCAATGAAGAAAAAAAAAGTTTC  550

seq1  AAACAAAATAAATGGAATGAATCCTATTTGTTGTTATGCATTAACATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATAAATGGAATGAATCCTATTTGTTGTTATGCATTAACATATG  600

seq1  CTTTTATATGACTAGGAAAACATTTCCCATGCAAAAAATTATCATTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATGACTAGGAAAACATTTCCCATGCAAAAAATTATCATTTCCA  650

seq1  ACAAGGAGTACAGAAAAAAAATGACTAAGATTTGATCAACCCGAACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGTACAGAAAAAAAATGACTAAGATTTGATCAACCCGAACATTC  700

seq1  TTATTGACTAGAGAGGGGAATAAGATGCAGAGTTAATATAATAAAGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACTAGAGAGGGGAATAAGATGCAGAGTTAATATAATAAAGCAGA  750

seq1  AAACTATGCAAATTATAAGAAAATCATTTAGAAATACTCTCTGGGAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGCAAATTATAAGAAAATCATTTAGAAATACTCTCTGGGAGATG  800

seq1  AAGAAAAGAAAAGTTTGGAGGCATTAAAGGTTGGTTTCGGCTGAGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGTTTGGAGGCATTAAAGGTTGGTTTCGGCTGAGAGATG  850

seq1  GCATTTGGACAGAGCTAAGGCATGATAGAGTTTCAAAAGGGATTGGCAAT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCATTTGGACAGAGCTAAGGCATGATAGAGTTTC-AAAGGGATTGGCAAT  899

seq1  AATGGTGGGTCTCAAAGGAGTGAGGAAGGCATGGACACACACAACAGGCA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGGTGGGTCTCAAA-GAGTGAGGAAGGCATGGACACACACAACAGGCA  948

seq1  GACAGTGGCTCAGGTCAAGGATTACCTGCTGAAGTCAGGGATAGAGAGAT  1000
      |||||||||||| ||| |||||||||||||||||||| ||||||||||||
seq2  GACAGTGGCTCA-GTC-AGGATTACCTGCTGAAGTCA-GGATAGAGAGAT  995

seq1  GTATGTAGCCTAATTAGAGATTAAAACTTTCCAAAGATTTACAATTGGAA  1050
      ||||||||||| |||||||| ||||||||||  |||||||||||||||||
seq2  GTATGTAGCCT-ATTAGAGA-TAAAACTTTC--AAGATTTACAATTGGAA  1041

seq1  GAAAGGTAGACAATACCAGAATTGATTCATTTATTGAAAATGATTTATTG  1100
      |||| |||||| ||||||||| ||| |||||||||| |||||| ||||||
seq2  GAAA-GTAGAC-ATACCAGAA-TGA-TCATTTATTGGAAATGA-TTATTG  1086

seq1  AAATTTTAACGTGTAGGCAGCAATTAGTTCTTTGCAGGTCCCTTATGATG  1150
      ||  |||| ||||||| |||||||||||   ||||||||||||||||| |
seq2  AA--TTTACCGTGTAGCCAGCAATTAGT--CTTGCAGGTCCCTTATGA-G  1131

seq1  TCAT-CTTAAA  1160
      |||| ||||||
seq2  TCATCCTTAAA  1142

seq1: chr3_125454116_125454647
seq2: B6Ng01-003M09.g_68_599 (reverse)

seq1  TAACACACCTGTGAGTCAAGTGAGACAGACAACCAATAAGCTGGTATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACCTGTGAGTCAAGTGAGACAGACAACCAATAAGCTGGTATTGA  50

seq1  AGACTGGCATCACCATCTTGTAATTAATGGTTTTACAGAAATAGATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCATCACCATCTTGTAATTAATGGTTTTACAGAAATAGATTGTG  100

seq1  CAGATTTAAGAGCTTTGTTCCACAGTTTCAATACAAAGAAGGCCAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTAAGAGCTTTGTTCCACAGTTTCAATACAAAGAAGGCCAAGCAA  150

seq1  TGTGTAGTAAGGTCAATGTTGTGGCCCAGAGGTTCTAAGTGGCTGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTAAGGTCAATGTTGTGGCCCAGAGGTTCTAAGTGGCTGTTGGG  200

seq1  TAAAACTGCAAAGAGGAGTCCTAGGTTTAAGTGAAGGTTACATTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGCAAAGAGGAGTCCTAGGTTTAAGTGAAGGTTACATTCTACAG  250

seq1  ATGCCAGAACTATGTATGATACATGGATCAAGGACAGTCCAATAGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAACTATGTATGATACATGGATCAAGGACAGTCCAATAGAACCA  300

seq1  TTGGGAGAGAATTCCTACGTGTGCAGGGCAGCCAAGGTGGAGAGTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGAATTCCTACGTGTGCAGGGCAGCCAAGGTGGAGAGTGTGTC  350

seq1  TACACAAGGTTTCTTTGGGAGCTTGATTAATTACACTTCTAAGACCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGGTTTCTTTGGGAGCTTGATTAATTACACTTCTAAGACCCATT  400

seq1  AGGAGCAGGAGGACTTTGTGTTTGCCTTGCTGGATATGGTGTTTGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGAGGACTTTGTGTTTGCCTTGCTGGATATGGTGTTTGTGTTA  450

seq1  TTGCCTTGTTTGTTTGTTTGTTTGTTTTTAATTGTCTAGGAGTACAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGTTTGTTTGTTTGTTTGTTTTTAATTGTCTAGGAGTACAAAAT  500

seq1  TAAGAGACTGTACTTCCCAGGTATTAGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TAAGAGACTGTACTTCCCAGGTATTAGAATTC  532