BAC Information

Click to search

BAC

Clone NameB6Ng01-003P24
Chromosome3 (Build37)
Map Location 75,430,659 - 75,581,281
singlet/doubletdoublet
Overlap geneSerpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003P24.bB6Ng01-003P24.g
ACCDH841534DH841535
length1,1071,112
definitionDH841534|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P24, 5' end.DH841535|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,430,659 - 75,431,761)(75,580,163 - 75,581,281)
sequence
gaattcaaggcctttctgactttctgttctattaaatgtagtatatccgg
atttatgtggaggtccttgatccacttagacttgagttttgtgcagggta
ataaaaatggatcttattgtattcttctacatgtagacatctggttagac
cagcactatttgttgaagatgcttccttagttccattgatgatttttggc
ttcttggtcaaaactcaagtatcagtaggtggagattatataatttttac
tgacccccccaaaaggactcaataaaaatatttgcatgtgattagttaat
attttctacttttttaagttttatggggttgttagtgatatataatatag
atgaaatttcatgctgtatctcttattttcataaaacagcggctaaggag
gcaggcatataagaaaagtgccatattttaagtttaagaaaatcttacct
catccagagaaagaagcatgaaaaagttttaaaatgtttgtttatttctt
tctatgtgtaaggatgtagagcttgaaagtataatttgtgtaccaccttg
cccaccaatgccataagaaagtagcagagccgctggggctagagctataa
aaagttgttagctgccatgttggtgctaggaatcaaatctgggtactttg
gaaagtaactagtactcctagccactgatccatgtctctggctccaaagt
ttggaaggcttattggaggaaagaaatagtagcctcatttaatataagaa
agactgagagaactcttttgtcagaacacagcgccctttccacatcaaac
ccagagaagagtcagtaaatagctcaagaccttcttttcccatcacacaa
ggaaacaatcctagaggccagtgatttccctgaacatctataatgcatag
atagcacccacactgactaactacccatcctaaatgtcacttagtgacca
gagtatgggaagtcatagagtcgagaatcataataggaagaagaaaataa
atcaaagccaattaggacccttgcagtagaactgaaaaagaataagtatc
aacatctttaagtctgaaagtaaagaagtatattgaatcttagagaatat
tttgagc
gaattccaaagacaataagttaaaggaaatcccagataaagaattcaaaa
gaatacttataagaatgttcaactaaatgtaaaatgagggagctagagac
actgctcagtggtaaaggtacatagtgctattatgaaagatcagatttca
tttctcagcatccacattagaatgcctatatgaactccagttccaagaga
tctgacaccatattctgacttctgtaggcataaacatgcactcggtgcat
gtacattcaagtaaagcatcaataccaatcatttccactctaagcaaaga
gacttaattatatttctgaactagttcaaagaaaatgactgaatgaaaca
actgaaagaaagaaggaggtcaatttagaatatggaaacaaaaataaatt
gagattttaaaatacaaaaaaatagtcaacataaattttggaaatgaaaa
ttacagtaagtcaaataaaacccttagtggaaagctttgccaaaggggta
gattacttaagtagaatataaaatatcagggtttagagaacaggtagata
aatcagaatagcagtgatgatgaaacaataagaagaaacaataatgtaag
agggaagtaataccactagaagacaaaattgaccatgaaaggacgaggaa
atgtattagacggaaacacaaaatgtatattcaataaaatcacaacagaa
tatttcccaaatctagaaaaaggagtgatcatcccaagcactggaaataa
taagaccatgaaatattcctctccatcaacttatagtagatatagagagc
aacaaatattgcaagctgcaacagggaatcactaagtcacttataaaggt
aaagccatcagaactgcatcatttcttaagaatttagaggtccaaagaat
agaataatgtattatttaaaaaaatagctggtacctatatttatatgtcc
tgtaacaataccttttaaactaaaggaaagaggacattttatcatgataa
caccaactaaagaaagacatgctactaagccagcataaagaagatattga
ggactccaaacacctgatggccaaaaagttacattcatgagtctccggga
gggagccataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75430659_75431761
seq2: B6Ng01-003P24.b_48_1154

seq1  GAATTCAAGGCCTTTCTGACTTTCTGTTCTATTAAATGTAGTATATCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTTTCTGACTTTCTGTTCTATTAAATGTAGTATATCCGG  50

seq1  ATTTATGTGGAGGTCCTTGATCCACTTAGACTTGAGTTTTGTGCAGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGGAGGTCCTTGATCCACTTAGACTTGAGTTTTGTGCAGGGTA  100

seq1  ATAAAAATGGATCTTATTGTATTCTTCTACATGTAGACATCTGGTTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGGATCTTATTGTATTCTTCTACATGTAGACATCTGGTTAGAC  150

seq1  CAGCACTATTTGTTGAAGATGCTTCCTTAGTTCCATTGATGATTTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTATTTGTTGAAGATGCTTCCTTAGTTCCATTGATGATTTTTGGC  200

seq1  TTCTTGGTCAAAACTCAAGTATCAGTAGGTGGAGATTATATAATTTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCAAAACTCAAGTATCAGTAGGTGGAGATTATATAATTTTTAC  250

seq1  TGACCCCCCCAAAAGGACTCAATAAAAATATTTGCATGTGATTAGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCCCAAAAGGACTCAATAAAAATATTTGCATGTGATTAGTTAAT  300

seq1  ATTTTCTACTTTTTTAAGTTTTATGGGGTTGTTAGTGATATATAATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACTTTTTTAAGTTTTATGGGGTTGTTAGTGATATATAATATAG  350

seq1  ATGAAATTTCATGCTGTATCTCTTATTTTCATAAAACAGCGGCTAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTCATGCTGTATCTCTTATTTTCATAAAACAGCGGCTAAGGAG  400

seq1  GCAGGCATATAAGAAAAGTGCCATATTTTAAGTTTAAGAAAATCTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATATAAGAAAAGTGCCATATTTTAAGTTTAAGAAAATCTTACCT  450

seq1  CATCCAGAGAAAGAAGCATGAAAAAGTTTTAAAATGTTTGTTTATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGAAAGAAGCATGAAAAAGTTTTAAAATGTTTGTTTATTTCTT  500

seq1  TCTATGTGTAAGGATGTAGAGCTTGAAAGTATAATTTGTGTACCACCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGTAAGGATGTAGAGCTTGAAAGTATAATTTGTGTACCACCTTG  550

seq1  CCCACCAATGCCATAAGAAAGTAGCAGAGCCGCTGGGGCTAGAGCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAATGCCATAAGAAAGTAGCAGAGCCGCTGGGGCTAGAGCTATAA  600

seq1  AAAGTTGTTAGCTGCCATGTTGGTGCTAGGAATCAAATCTGGGTACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTTAGCTGCCATGTTGGTGCTAGGAATCAAATCTGGGTACTTTG  650

seq1  GAAAGTAACTAGTACTCCTAGCCACTGATCCATGTCTCTGGCTCCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAACTAGTACTCCTAGCCACTGATCCATGTCTCTGGCTCCAAAGT  700

seq1  TTGGAAGGCTTATTGGAGGAAAGAAATAGTAGCCTCATTTAATATAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCTTATTGGAGGAAAGAAATAGTAGCCTCATTTAATATAAGAA  750

seq1  AGACTGAGAGAACTCTTTTGTCAGAACACAGCGCCCTTTCCACATCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGAGAACTCTTTTGTCAGAACACAGCGCCCTTTCCACATCAAAC  800

seq1  CCAGAGAAGAGTCAGT-AATAGCTCAAGACCTTC-TTTCCCATCACACAA  848
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  CCAGAGAAGAGTCAGTAAATAGCTCAAGACCTTCTTTTCCCATCACACAA  850

seq1  GGAAACAATCCTAGAGGCCAGTGATTTCCCTGAACATCTATAATGCATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATCCTAGAGGCCAGTGATTTCCCTGAACATCTATAATGCATAG  900

seq1  ATAGCACCCACACTGACTAACTACCCAATCCTAAATGTCAC-TAGTGACC  947
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  ATAGCACCCACACTGACTAACTACCC-ATCCTAAATGTCACTTAGTGACC  949

seq1  AGAGTATGGGAAGTCATAGAGTCGAGAAATCATAATAGGAAGAAGAAAAT  997
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGTATGGGAAGTCATAGAGTCGAG-AATCATAATAGGAAGAAGAAAAT  998

seq1  AAATCAAAAGCCAATTAAGACCCCTTGCAAAAG-ACTG-AAAAGAATAAG  1045
      ||||| ||||||||||| || ||||||||  || |||| |||||||||||
seq2  AAATC-AAAGCCAATTAGGA-CCCTTGCAGTAGAACTGAAAAAGAATAAG  1046

seq1  TATCAACATCTTTAAGTCTGAATAGAAAGAAGTAT-TTGAATGCT-GAGA  1093
      ||||||||||||||||||||||   |||||||||| ||||||  | ||||
seq2  TATCAACATCTTTAAGTCTGAAAGTAAAGAAGTATATTGAATCTTAGAGA  1096

seq1  ATA-TTTGAGC  1103
      ||| |||||||
seq2  ATATTTTGAGC  1107

seq1: chr3_75580163_75581281
seq2: B6Ng01-003P24.g_67_1178 (reverse)

seq1  GTTATTGGCT-CCTTCCTGAGACTTCATGGATGTAACTATTTTGGCCATC  49
      |||| ||||| ||| || ||||| ||||| |||||||| |||||||||||
seq2  GTTA-TGGCTCCCTCCCGGAGAC-TCATGAATGTAACT-TTTTGGCCATC  47

seq1  AGTGTTTTGGAGTCCTTCAATTATCTTCTTTATTGCTTGCTTAGTTAGCA  99
      ||   |||||||||| |||| ||||||||||| |||| |||||| |||||
seq2  AGGTGTTTGGAGTCC-TCAA-TATCTTCTTTA-TGCTGGCTTAG-TAGCA  93

seq1  TGTCTTTCTTTAGTTTGTGTTAATCATGATAAAATGTCCTCTTTCCTTTA  149
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TGTCTTTCTTTAGTTGGTGTT-ATCATGATAAAATGTCCTCTTTCCTTTA  142

seq1  GTTATAAAAGGTATTGTTACAGGACATATAAATATAGGTACCAGCTATTT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT-TAAAAGGTATTGTTACAGGACATATAAATATAGGTACCAGCTATTT  191

seq1  TTTTAAATAATACATTATTCTATTCTTTGGACCTCTAAATTCTTAAG-AA  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTAAATAATACATTATTCTATTCTTTGGACCTCTAAATTCTTAAGAAA  241

seq1  TGGTGCAGTTCTGATGGCTTTACCTTTATAAGTGACTTAGTGATTCCCTG  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTTCTGATGGCTTTACCTTTATAAGTGACTTAGTGATTCCCTG  291

seq1  TTGCAGCTTGCAATATTTGTTGCTCTCTATATCTACTATAAGTTGATGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTTGCAATATTTGTTGCTCTCTATATCTACTATAAGTTGATGGA  341

seq1  GAGGAATATTTCATGGTCTTATTATTTCCAGTGCTTGGGATGATCACTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATTTCATGGTCTTATTATTTCCAGTGCTTGGGATGATCACTCC  391

seq1  TTTTTCTAGATTTGGGAAATATTCTGTTGTGATTTTATTGAATATACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGATTTGGGAAATATTCTGTTGTGATTTTATTGAATATACATT  441

seq1  TTGTGTTTCCGTCTAATACATTTCCTCGTCCTTTCATGGTCAATTTTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCCGTCTAATACATTTCCTCGTCCTTTCATGGTCAATTTTGTC  491

seq1  TTCTAGTGGTATTACTTCCCTCTTACATTATTGTTTCTTCTTATTGTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGGTATTACTTCCCTCTTACATTATTGTTTCTTCTTATTGTTTC  541

seq1  ATCATCACTGCTATTCTGATTTATCTACCTGTTCTCTAAACCCTGATATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACTGCTATTCTGATTTATCTACCTGTTCTCTAAACCCTGATATT  591

seq1  TTATATTCTACTTAAGTAATCTACCCCTTTGGCAAAGCTTTCCACTAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTACTTAAGTAATCTACCCCTTTGGCAAAGCTTTCCACTAAGG  641

seq1  GTTTTATTTGACTTACTGTAATTTTCATTTCCAAAATTTATGTTGACTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTGACTTACTGTAATTTTCATTTCCAAAATTTATGTTGACTAT  691

seq1  TTTTTTGTATTTTAAAATCTCAATTTATTTTTGTTTCCATATTCTAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTATTTTAAAATCTCAATTTATTTTTGTTTCCATATTCTAAATT  741

seq1  GACCTCCTTCTTTCTTTCAGTTGTTTCATTCAGTCATTTTCTTTGAACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTTCTTTCTTTCAGTTGTTTCATTCAGTCATTTTCTTTGAACTA  791

seq1  GTTCAGAAATATAATTAAGTCTCTTTGCTTAGAGTGGAAATGATTGGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAATATAATTAAGTCTCTTTGCTTAGAGTGGAAATGATTGGTAT  841

seq1  TGATGCTTTACTTGAATGTACATGCACCGAGTGCATGTTTATGCCTACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTACTTGAATGTACATGCACCGAGTGCATGTTTATGCCTACAG  891

seq1  AAGTCAGAATATGGTGTCAGATCTCTTGGAACTGGAGTTCATATAGGCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAATATGGTGTCAGATCTCTTGGAACTGGAGTTCATATAGGCAT  941

seq1  TCTAATGTGGATGCTGAGAAATGAAATCTGATCTTTCATAATAGCACTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTGGATGCTGAGAAATGAAATCTGATCTTTCATAATAGCACTAT  991

seq1  GTACCTTTACCACTGAGCAGTGTCTCTAGCTCCCTCATTTTACATTTAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTACCACTGAGCAGTGTCTCTAGCTCCCTCATTTTACATTTAGT  1041

seq1  TGAACATTCTTATAAGTATTCTTTTGAATTCTTTATCTGGGATTTCCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTCTTATAAGTATTCTTTTGAATTCTTTATCTGGGATTTCCTTT  1091

seq1  AACTTATTGTCTTTGGAATTC  1119
      |||||||||||||||||||||
seq2  AACTTATTGTCTTTGGAATTC  1112