BAC Information

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BAC

Clone NameB6Ng01-005H01
Chromosome3 (Build37)
Map Location 6,030,817 - 6,184,396
singlet/doubletdoublet
Overlap geneLOC100041193, EG620570
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H01.bB6Ng01-005H01.g
ACCDH842575DH842576
length1,005665
definitionDH842575|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H01, 5' end.DH842576|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,030,817 - 6,031,817)(6,183,732 - 6,184,396)
sequence
gaattctacaaaatgaataattagcttccttagttagggattttattgct
ttgaaaagacaccattaccaaggcaactcttatgacgaaaaacaattcat
tggagctggcttatagtttcagatgtttagtccattatcatgttggtcag
aaagaatggcagcttccaggcagacatggtactgaagaaaccaagagtta
tgcaacttgatcagaaggcagccaggaggagactagattccacgatgggt
aaagcttgaatataggagacctcaaagcctacccatatagtgacacactt
cctccaaccatgccacacctattcaaaaaaggcaataccttctctaatag
agtaccactccctatggaccaagtattcaaacacatgaatcaatgggggc
aagacctatttaaactaccacagccactatgcttcaaaaatctgtattaa
aggtgtgcattgattttggtcaaaatcatgtttcatcccatgtctagatc
atgatcaaaagcctgtgtcttctccagcctcaagatctggatcaaaggca
tgttgtcttcctgcctcaagatacaggtcagttatggtttccatttctgg
attgtagttcatttcagatatagtcaaagtgacatcccagaagagccatc
atagtagataaccccaatgtttcaagtatattggtaaaatattagttaca
ttttcatcctcataggactcttactgataatctgactgagctatactaga
atgattgagttttttctatatattgaaaggatatttttcatattatgtaa
aataaattattgacattggcaatagtgctcaaaatgtatctctgcagcag
tgaatgtatagtgtttaggacacgctcaccagcacagcaaattaaataac
caatatgcttggcagcacagtccgctggttgatgacaaataccttttcat
ctgttgctcttgaatgtgaaacccttctttagcttctactgaagttgggg
atgct

gaattctgttctagacacatcctacttaagaactattattgattgctact
ttgttttgtaattgacagaagaaaagagaattgaatgatggagtagtata
atgaatatttttggaattatcgaaatagcataagatttttgatttctcta
atatatgatcaaatatttattgggcaccaattgtctcccgagaacaattc
tactgagatagtaaagagtaaatagagaaagatggcagtaacctcccctg
aggaatttttgttctcctgaaaagttaataattgtttataaatgaaagca
ttaaaaccacagggaaatgtgtaaattatacatttgctgatcaattaaaa
agttttatactttgtgagttttctcagtaaatccacaaaaaaatgacttt
taaacattagttaatcattttgaaggatataaaatatatcttagaaacat
gaacgtgtacatgcacatgctactccatctcaatccaaggaatagtctta
aggatgaaatgaaggacttgggagtcagctctgttctggctcagtgatgg
aggttgaaacactgaaatgctggcaggcatccctgtaatacaatttcttt
gacttctctttgagaaagggaaatcaatctctctctctctctctctctct
ctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6030817_6031817
seq2: B6Ng01-005H01.b_43_1047

seq1  GAATTCTACAAAATGAATAATTAGCTTCCTTAGTTAGGGATTTTATTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAATGAATAATTAGCTTCCTTAGTTAGGGATTTTATTGCT  50

seq1  TTGAAAAGACACCATTACCAAGGCAACTCTTATGACGAAAAACAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGACACCATTACCAAGGCAACTCTTATGACGAAAAACAATTCAT  100

seq1  TGGAGCTGGCTTATAGTTTCAGATGTTTAGTCCATTATCATGTTGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGGCTTATAGTTTCAGATGTTTAGTCCATTATCATGTTGGTCAG  150

seq1  AAAGAATGGCAGCTTCCAGGCAGACATGGTACTGAAGAAACCAAGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGCAGCTTCCAGGCAGACATGGTACTGAAGAAACCAAGAGTTA  200

seq1  TGCAACTTGATCAGAAGGCAGCCAGGAGGAGACTAGATTCCACGATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTGATCAGAAGGCAGCCAGGAGGAGACTAGATTCCACGATGGGT  250

seq1  AAAGCTTGAATATAGGAGACCTCAAAGCCTACCCATATAGTGACACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGAATATAGGAGACCTCAAAGCCTACCCATATAGTGACACACTT  300

seq1  CCTCCAACCATGCCACACCTATTCAAAAAAGGCAATACCTTCTCTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACCATGCCACACCTATTCAAAAAAGGCAATACCTTCTCTAATAG  350

seq1  AGTACCACTCCCTATGGACCAAGTATTCAAACACATGAATCAATGGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACTCCCTATGGACCAAGTATTCAAACACATGAATCAATGGGGGC  400

seq1  AAGACCTATTTAAACTACCACAGCCACTATGCTTCAAAAATCTGTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTATTTAAACTACCACAGCCACTATGCTTCAAAAATCTGTATTAA  450

seq1  AGGTGTGCATTGATTTTGGTCAAAATCATGTTTCATCCCATGTCTAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCATTGATTTTGGTCAAAATCATGTTTCATCCCATGTCTAGATC  500

seq1  ATGATCAAAAGCCTGTGTCTTCTCCAGCCTCAAGATCTGGATCAAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAAAGCCTGTGTCTTCTCCAGCCTCAAGATCTGGATCAAAGGCA  550

seq1  TGTTGTCTTCCTGCCTCAAGATACAGGTCAGTTATGGTTTCCATTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTTCCTGCCTCAAGATACAGGTCAGTTATGGTTTCCATTTCTGG  600

seq1  ATTGTAGTTCATTTCAGATATAGTCAAAGTGACATCCCAGAAGAGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTTCATTTCAGATATAGTCAAAGTGACATCCCAGAAGAGCCATC  650

seq1  ATAGTAGATAACCCCAATGTTTCAAGTATATTGGTAAAATATTAGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGATAACCCCAATGTTTCAAGTATATTGGTAAAATATTAGTTACA  700

seq1  TTTTCATCCTCATAGGACTCTTACTGATAATCTGACTGAGCTATACTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCTCATAGGACTCTTACTGATAATCTGACTGAGCTATACTAGA  750

seq1  ATGATTGAGTTTTTTCTATATATTGAAAGGATATTTTTCATATTATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAGTTTTTTCTATATATTGAAAGGATATTTTTCATATTATGTAA  800

seq1  AATAAATTATTGACATTGGCAATAGTGCTCAAAATGTATCTCTGCAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATTGACATTGGCAATAGTGCTCAAAATGTATCTCTGCAGCAG  850

seq1  TGAATGTATAGTGTTTAGGACACGCTCACCAGCACAGCAAAATAAATAAC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAATGTATAGTGTTTAGGACACGCTCACCAGCACAGCAAATTAAATAAC  900

seq1  CAATATGC-TGGCAGCACAGTCCGCTGGTTGATGACAAATACC-TTTCAC  948
      |||||||| |||||||||||||||||||||||||||||||||| ||||| 
seq2  CAATATGCTTGGCAGCACAGTCCGCTGGTTGATGACAAATACCTTTTCAT  950

seq1  CTGTTGCTCT--GATGTGAAAACCCTCTTTAAGCTTCTACTG-AGGTGGG  995
      ||||||||||   |||||||| || ||||| ||||||||||| || ||||
seq2  CTGTTGCTCTTGAATGTGAAACCCTTCTTT-AGCTTCTACTGAAGTTGGG  999

seq1  GATGCT  1001
      ||||||
seq2  GATGCT  1005


seq1: chr3_6183732_6184396
seq2: B6Ng01-005H01.g_68_732 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTTCCCTT  50

seq1  TCTCAAAGAGAAGTCAAAGAAATTGTATTACAGGGATGCCTGCCAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGAGAAGTCAAAGAAATTGTATTACAGGGATGCCTGCCAGCATT  100

seq1  TCAGTGTTTCAACCTCCATCACTGAGCCAGAACAGAGCTGACTCCCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTCAACCTCCATCACTGAGCCAGAACAGAGCTGACTCCCAAGT  150

seq1  CCTTCATTTCATCCTTAAGACTATTCCTTGGATTGAGATGGAGTAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTCATCCTTAAGACTATTCCTTGGATTGAGATGGAGTAGCATG  200

seq1  TGCATGTACACGTTCATGTTTCTAAGATATATTTTATATCCTTCAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTACACGTTCATGTTTCTAAGATATATTTTATATCCTTCAAAATG  250

seq1  ATTAACTAATGTTTAAAAGTCATTTTTTTGTGGATTTACTGAGAAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAATGTTTAAAAGTCATTTTTTTGTGGATTTACTGAGAAAACTC  300

seq1  ACAAAGTATAAAACTTTTTAATTGATCAGCAAATGTATAATTTACACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATAAAACTTTTTAATTGATCAGCAAATGTATAATTTACACATT  350

seq1  TCCCTGTGGTTTTAATGCTTTCATTTATAAACAATTATTAACTTTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGGTTTTAATGCTTTCATTTATAAACAATTATTAACTTTTCAGG  400

seq1  AGAACAAAAATTCCTCAGGGGAGGTTACTGCCATCTTTCTCTATTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAAATTCCTCAGGGGAGGTTACTGCCATCTTTCTCTATTTACTC  450

seq1  TTTACTATCTCAGTAGAATTGTTCTCGGGAGACAATTGGTGCCCAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATCTCAGTAGAATTGTTCTCGGGAGACAATTGGTGCCCAATAAA  500

seq1  TATTTGATCATATATTAGAGAAATCAAAAATCTTATGCTATTTCGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCATATATTAGAGAAATCAAAAATCTTATGCTATTTCGATAAT  550

seq1  TCCAAAAATATTCATTATACTACTCCATCATTCAATTCTCTTTTCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATATTCATTATACTACTCCATCATTCAATTCTCTTTTCTTCTG  600

seq1  TCAATTACAAAACAAAGTAGCAATCAATAATAGTTCTTAAGTAGGATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACAAAACAAAGTAGCAATCAATAATAGTTCTTAAGTAGGATGTG  650

seq1  TCTAGAACAGAATTC  665
      |||||||||||||||
seq2  TCTAGAACAGAATTC  665


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