BAC Information

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BAC

Clone NameB6Ng01-005N04
Chromosome3 (Build37)
Map Location 134,339,111 - 134,422,967
singlet/doubletdoublet
Overlap geneLOC100039234
Upstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
Downstream geneTacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005N04.bB6Ng01-005N04.g
ACCDH842856DH842857
length1,1511,146
definitionDH842856|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N04, 5' end.DH842857|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,339,111 - 134,340,299)(134,421,799 - 134,422,967)
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaaat
gttcaacatttaaaatttaaataaagaaaatatataataaaaataaaatc
aataaataaatgcagtatagaaaaaataaaagtaaaacaattctttacat
ttttaaaaatcacttataaaataaccactagaaattggtcattgccaaag
caaaatttctcatgtcttgtttaatttttgaaatatacatacctatctca
ttatgtcagttatgcaacattttatacagtacagccttctgtaaaatacg
aacaatattttaaacgatttatagttcatagtttattatagttaccagaa
gcaagccagaggctgacatcaagactctccacttttattttgaaacaagg
acaacagtgatcaactcatggaccagactggaggactgtaaactccagga
atcttcttacctccatcctcctccatccaccctatgcttccccactctgt
tagaatcacaggcctgcatgaccatacagctgcttttatttgaatgctga
cattcaacctcagaaccccatgcatataaagctagtgcttcactgaagga
accatttccctgtgctgaaatttatgcaaaagctttgataattactactt
gtgaacatttgttttatggctccttcactttcaatccctataatcaatat
cttcagtttatgtcagggtaaaaatatcgtgaagaagcaaaataactaga
atcactatataacagcatgaggaatataaatcatatggaaaagtctgtga
aatgttattgctcatgcatattagattaatgaacagtagtttaattagct
gttattaccacaatgggatatatcatggtgggatgcccagatgacctcag
tgaaaatcagcaccgctcaataagtctcttataagctaaaatttttctgt
atcttcaacaaacgtatacagcaaatctgtacatatagtaaaacacacat
agtatttcagtaatgagacagatgcatctatagatttatttttaagacgc
tatggatacattactagcttatgctttgctgacaatttaatattatttct
ctaactgattagggtgctggcttatgatggttcaactatccatgctatct
a
gaattctcttatcatggaagacatgacactcctgttctatgacagtcttg
gaatatcttaatatctcagaaagtctggttatctagtgtaataaatttgc
cagcccagcaagctatattacaatgaaatgcagataatctgtgtggtgta
ttgaacttcaagtggaattcgtggtgctttctctaagttgttgttgattg
cttgattttattttaaaataaatatggcctttaactgtcttatttatcct
aagctaagattaatttatatctataattaaaactttaaaacagcaacact
ttctaaatagtccgacattgattgctctatactgttacctatggaatata
ccaaagtgtgtttacggctttgtttctttttttcaaactttttccatggt
aatttcttcttaaagtcttattcttagttgaattctatcttcttctgtct
agttattgaagcactgcctgaagtaattctgaggcatctaatttcttatt
agcatgactttatggcacagttgtgaagtaaagttcactaaaggaggtaa
aaatgtctttaatagtaagatcataggagcatccagggatgatgatgctt
aaacctaccaattgcaatgataccacatttgtcagggtataaatttatca
gaatacattgtttctaattagtgctaatttttatgacaggtataagatat
tatctatatacagttcactaacatggcgattgctgttaaaaagagacttt
cttgaatcattccatccattaaattgcatgaggctttttctgtgacagat
gaaatttttgtgtggtgaaatgcagcagtcttgttttcacttccattcct
cctttttatattgattgtagagtaatcttctaagcaatttacatcacgcc
ataaaatggaaaatgacaaggagacagctaaatgtgtagtgaacccagtg
agcagctacctcatgctctgacattatgacttccctgatggagtgtcctc
taactgatgagccaataattgctcctttctatgtcacctttcaagcatgt
agcatgcatggaggaaagtaacagaaatgaaagtaatagatgagtagatc
tgcatgatgactctgagcacgtgtctgagactttggaactggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134339111_134340299
seq2: B6Ng01-005N04.b_47_1197

seq1  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAACATTTAAAATTTAAATAAAGAAAATATATAATAAAAATAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATTTAAAATTTAAATAAAGAAAATATATAATAAAAATAAAATC  100

seq1  AATAAATAAATGCAGTATAGAAAAAATAAAAGTAAAACAATTCTTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATGCAGTATAGAAAAAATAAAAGTAAAACAATTCTTTACAT  150

seq1  TTTTAAAAATCACTTATAAAATAACCACTAGAAATTGGTCATTGCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATCACTTATAAAATAACCACTAGAAATTGGTCATTGCCAAAG  200

seq1  CAAAATTTCTCATGTCTTGTTTAATTTTTGAAATATACATACCTATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTCTCATGTCTTGTTTAATTTTTGAAATATACATACCTATCTCA  250

seq1  TTATGTCAGTTATGCAACATTTTATACAGTACAGCCTTCTGTAAAATACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAGTTATGCAACATTTTATACAGTACAGCCTTCTGTAAAATACG  300

seq1  AACAATATTTTAAACGATTTATAGTTCATAGTTTATTATAGTTACCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTTAAACGATTTATAGTTCATAGTTTATTATAGTTACCAGAA  350

seq1  GCAAGCCAGAGGCTGACATCAAGACTCTCCACTTTTATTTTGAAACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGAGGCTGACATCAAGACTCTCCACTTTTATTTTGAAACAAGG  400

seq1  ACAACAGTGATCAACTCATGGACCAGACTGGAGGACTGTAAACTCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGATCAACTCATGGACCAGACTGGAGGACTGTAAACTCCAGGA  450

seq1  ATCTTCTTACCTCCATCCTCCTCCATCCACCCTATGCTTCCCCACTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTACCTCCATCCTCCTCCATCCACCCTATGCTTCCCCACTCTGT  500

seq1  TAGAATCACAGGCCTGCATGACCATACAGCTGCTTTTATTTGAATGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCACAGGCCTGCATGACCATACAGCTGCTTTTATTTGAATGCTGA  550

seq1  CATTCAACCTCAGAACCCCATGCATATAAAGCTAGTGCTTCACTGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCTCAGAACCCCATGCATATAAAGCTAGTGCTTCACTGAAGGA  600

seq1  ACCATTTCCCTGTGCTGAAATTTATGCAAAAGCTTTGATAATTACTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCCTGTGCTGAAATTTATGCAAAAGCTTTGATAATTACTACTT  650

seq1  GTGAACATTTGTTTTATGGCTCCTTCACTTTCAATCCCTATAATCAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATTTGTTTTATGGCTCCTTCACTTTCAATCCCTATAATCAATAT  700

seq1  CTTCAGTTTATGTCAGGGTAAAAATATCGTGAAGAAGCAAAATAACTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTATGTCAGGGTAAAAATATCGTGAAGAAGCAAAATAACTAGA  750

seq1  ATCACTATATAACAGCATGAGGAATATAAATCATATGGAAAAGTCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATATAACAGCATGAGGAATATAAATCATATGGAAAAGTCTGTGA  800

seq1  AATGTTATTGCTCATGCATATTAGATTAATGAACAGTAGTTTAATTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTGCTCATGCATATTAGATTAATGAACAGTAGTTTAATTAGCT  850

seq1  GTTATTACCACAATGGGATATATCATGGTGGGATGCCCAGATGACCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACCACAATGGGATATATCATGGTGGGATGCCCAGATGACCTCAG  900

seq1  TGAAAAATCAGCACCGCTCAATAAAGTCTCTTATAAGCTAAAATTTTTCT  950
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TG-AAAATCAGCACCGCTCAAT-AAGTCTCTTATAAGCTAAAATTTTTCT  948

seq1  GTATCTTCAACAAACGTATACAAGCAAAATTCTTGTACATATAGTAAAAC  1000
      ||||||||||||||||||||| ||||||  || |||||||||||||||||
seq2  GTATCTTCAACAAACGTATAC-AGCAAA--TC-TGTACATATAGTAAAAC  994

seq1  ACACATAAGTATTTCAGTAAGGAGACAAGAATGCATCCTATAGATTTAAT  1050
      |||||| ||||||||||||| ||||||   |||||| |||||||||| ||
seq2  ACACAT-AGTATTTCAGTAATGAGACA--GATGCAT-CTATAGATTT-AT  1039

seq1  TTTTAAAAAGGCCTATGGATACATTTACTAGCTTTAATGCCTTTTGTCTG  1100
      |||||| | |  ||||||||||| ||||||||||  ||||  |||| |||
seq2  TTTTAAGACG--CTATGGATACA-TTACTAGCTT--ATGC--TTTG-CTG  1081

seq1  ACAATTTTTAAATTAATTTATTTCTCCTAAACTGTTTTGGGTGTTGCTGG  1150
      |||||||   |||    |||||||||   ||||| || |||   ||||||
seq2  ACAATTT---AAT---ATTATTTCTC--TAACTGATTAGGG---TGCTGG  1120

seq1  CTTAGTGATGGTTTCCAAACTAATCCCCATGCTAATCTA  1189
      |||| ||||||||    |||||    ||||||| |||||
seq2  CTTA-TGATGGTT---CAACTA---TCCATGCT-ATCTA  1151

seq1: chr3_134421799_134422967
seq2: B6Ng01-005N04.g_66_1211 (reverse)

seq1  CACACCAGTTCCAAAGGCTCAGGAACCACGTGCTCAGGTTCATCATGCCA  50
      |||||||||||||||| |||||    |||||||||||  |||||||| ||
seq2  CACACCAGTTCCAAAGTCTCAG---ACACGTGCTCAGAGTCATCATG-CA  46

seq1  GGAATCCTACTCATCTTTAATTACTTTCTATCTCTGTTACTTTTCTCACT  100
      |  || ||||||||||   ||||||||| || ||||||||||| |||  |
seq2  G--AT-CTACTCATCT---ATTACTTTC-ATTTCTGTTACTTTCCTCCAT  89

seq1  GCAATGCCACAATGCCTTGGAAAGGTGACATAAGAAAGGGAGCATTTATT  150
      || |||| || ||||  | |||||||||||| ||||| |||||| |||  
seq2  GC-ATGCTAC-ATGC--TTGAAAGGTGACAT-AGAAA-GGAGCAATTA--  131

seq1  TTGGCTCA-CAGTTAGAGGGAACACTCCATCAGGGAAGTCATAATGTCAG  199
      |||||||| ||||||||||  |||||||||||||||||||||||||||| 
seq2  TTGGCTCATCAGTTAGAGG--ACACTCCATCAGGGAAGTCATAATGTCA-  178

seq1  GAGCATGAGGTAGCTGCTCACTGGGTTCACTACAACATTTAGCTGTCTCC  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGCATGAGGTAGCTGCTCACTGGGTTCACTAC-ACATTTAGCTGTCTCC  227

seq1  TTGTCATTTTCCATTTTAATGGCGTGATGTAAATTGCTTAGAAGATTACT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTCCATTTT-ATGGCGTGATGTAAATTGCTTAGAAGATTACT  276

seq1  CTACAATCAATATAAAAAGGAGGAATGGAAGTGAAAACAAGACTGCTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATCAATATAAAAAGGAGGAATGGAAGTGAAAACAAGACTGCTGCA  326

seq1  TTTCACCACACAAAAATTTCATCTGTCACAGAAAAAGCCTCATGCAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACACAAAAATTTCATCTGTCACAGAAAAAGCCTCATGCAATTT  376

seq1  AATGGATGGAATGATTCAAGAAAGTCTCTTTTTAACAGCAATCGCCATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGAATGATTCAAGAAAGTCTCTTTTTAACAGCAATCGCCATGT  426

seq1  TAGTGAACTGTATATAGATAATATCTTATACCTGTCATAAAAATTAGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACTGTATATAGATAATATCTTATACCTGTCATAAAAATTAGCAC  476

seq1  TAATTAGAAACAATGTATTCTGATAAATTTATACCCTGACAAATGTGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAAACAATGTATTCTGATAAATTTATACCCTGACAAATGTGGTA  526

seq1  TCATTGCAATTGGTAGGTTTAAGCATCATCATCCCTGGATGCTCCTATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAATTGGTAGGTTTAAGCATCATCATCCCTGGATGCTCCTATGA  576

seq1  TCTTACTATTAAAGACATTTTTACCTCCTTTAGTGAACTTTACTTCACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTATTAAAGACATTTTTACCTCCTTTAGTGAACTTTACTTCACAA  626

seq1  CTGTGCCATAAAGTCATGCTAATAAGAAATTAGATGCCTCAGAATTACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCATAAAGTCATGCTAATAAGAAATTAGATGCCTCAGAATTACTT  676

seq1  CAGGCAGTGCTTCAATAACTAGACAGAAGAAGATAGAATTCAACTAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTGCTTCAATAACTAGACAGAAGAAGATAGAATTCAACTAAGAA  726

seq1  TAAGACTTTAAGAAGAAATTACCATGGAAAAAGTTTGAAAAAAAGAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTAAGAAGAAATTACCATGGAAAAAGTTTGAAAAAAAGAAACA  776

seq1  AAGCCGTAAACACACTTTGGTATATTCCATAGGTAACAGTATAGAGCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTAAACACACTTTGGTATATTCCATAGGTAACAGTATAGAGCAAT  826

seq1  CAATGTCGGACTATTTAGAAAGTGTTGCTGTTTTAAAGTTTTAATTATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCGGACTATTTAGAAAGTGTTGCTGTTTTAAAGTTTTAATTATAG  876

seq1  ATATAAATTAATCTTAGCTTAGGATAAATAAGACAGTTAAAGGCCATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTAATCTTAGCTTAGGATAAATAAGACAGTTAAAGGCCATATT  926

seq1  TATTTTAAAATAAAATCAAGCAATCAACAACAACTTAGAGAAAGCACCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATAAAATCAAGCAATCAACAACAACTTAGAGAAAGCACCAC  976

seq1  GAATTCCACTTGAAGTTCAATACACCACACAGATTATCTGCATTTCATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGAAGTTCAATACACCACACAGATTATCTGCATTTCATTG  1026

seq1  TAATATAGCTTGCTGGGCTGGCAAATTTATTACACTAGATAACCAGACTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGCTTGCTGGGCTGGCAAATTTATTACACTAGATAACCAGACTT  1076

seq1  TCTGAGATATTAAGATATTCCAAGACTGTCATAGAACAGGAGTGTCATGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATATTAAGATATTCCAAGACTGTCATAGAACAGGAGTGTCATGT  1126

seq1  CTTCCATGATAAGAGAATTC  1169
      ||||||||||||||||||||
seq2  CTTCCATGATAAGAGAATTC  1146