BAC Information

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BAC

Clone NameB6Ng01-006P17
Chromosome3 (Build37)
Map Location 41,058,986 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P17.bB6Ng01-006P17.g
ACCDH843689DH843690
length998838
definitionDH843689|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P17, 5' end.DH843690|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatcagatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtctttttctttgcagaagctttgcaatttta
tgaggtcccatttattgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcatttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtaccaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagcttccttgtcaaagatcaagt
gaccataggtgtgtggattcatctctggttcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatggcgtgag
taaagttttatctattcaattctgacaatttaagttcaccattagaatct
aaataaaactgaaagtagagaatcaacttcctcaaagttttttctgagtt
ccatatacatgttataggacagaggcttcctccaaaataacataaataca
atttaagataatatgctatatgaaactaagattctttttgaaaaattc
gaattcattgaaatatgtagcaatgggagttaaagggcaggggcaacctc
tacaaagtcccaaagacttgggatatgagaggctacgaggagtcaaggga
gatgacattagttaaaaggtcaaaagtgggaagatggaactagaagagac
cacctccagaagataaacagatatggccccagttaaggcagggtacccac
ctattttcaaaatttgtaacccagaattgatcttgtctagagggaatgca
gaggcaaaaatggagcggagactggaagaaaggccatccaatgaccagcc
caatttgggacccatcccatgggcacacaacaaatcctgccactactact
gagctcatattgtagacaggagacaggcatggctgtcctctgagaggctt
taccatcaactgactaagatatacagatacttacagccaaccattggatt
tggaagagattgggaaggactgaagaggatgaaggagactgcacatagga
agagcaacagtgtcgactaacccagatccttcagacctcccagtgattaa
gccaaagcaaagcagcatacatagtgtggtttgtggcatccagcacgtgt
ttaacaaaggactggatgaaatcaccgcagtggaagagaatggtcgaaat
cctgtggaaaatcaatgccccaaacaggaaaagtcctgatgggggtgaag
tagggggaggtaaggcaggtgagggaggacactcttagagtctgggggag
agggatggggtgaaaaattcatggaggcaggaccaggaaaatgggcaact
ttttgaatgtaaataaataaaaatatttaatgatcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058986_41059737
seq2: B6Ng01-006P17.b_45_797 (reverse)

seq1  CATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCA  50
      ||||||||||||||||||||||||||||||||| ||||| |||||| |||
seq2  CATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCA  50

seq1  AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAG  100
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAG  100

seq1  GATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTA  150
      ||||| |||||||||||||||||||||||||| |||||||| || |||||
seq2  GATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAACTGTACTA  150

seq1  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGAGCAATTGTGATCAAAACTGCATGGTACTGGTATAGTGACAGACAAG  200

seq1  CAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTAT  250
       |||||||||||| |||||||||||  |||| | ||||||||||||||||
seq2  TAGACCAATGGAACAGAATTGAAGAACCAGAGATGAATCCACACACCTAT  250

seq1  GGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGA  300
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  GGTCACTTGATCTTTGACAAGGAAGCTAAAACCATCCAGTGGAAAAAAGA  300

seq1  CAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAA  350
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAA  350

seq1  GAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAG  400
      ||||||||||||||||| | ||||||||| ||||||||||||||||||||
seq2  GAATGCGAATTGATCCATTTCTATCTCCTGGTACTAAGGTCAAATCTAAG  400

seq1  TGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGA  450
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGA  450

seq1  GAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGC  500
      |||||| |||||| |||||||||||||||  |||||||||||||||||| 
seq2  GAAAGTAGGGAAATGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTGA  500

seq1  ATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGAC  550
      ||||||||||||||||||||||||||||||  |||||  | |||||||||
seq2  ATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCAATAAATGGGAC  550

seq1  CTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGAC  600
      ||||| ||| |||||||||||||||| | |||||||||||||||||||||
seq2  CTCATAAAATTGCAAAGCTTCTGCAAAGAAAAAGACACCGTCAATAAGAC  600

seq1  AAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAG  649
      ||||||| |||||||||||||||||||||||||||||||||| ||||| |
seq2  AAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCTG  650

seq1  ATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCC  699
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  ATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCC  700

seq1  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGA  749
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGA  750

seq1  ATT  752
      |||
seq2  ATT  753