BAC Information

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BAC

Clone NameB6Ng01-008P21
Chromosome13 (Build37)3 (Build37)
Map Location 61,397,149 - 61,398,26541,059,106 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps
Downstream geneLOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008P21.bB6Ng01-008P21.g
ACCDH845060DH845061
length1,095920
definitionDH845060|Mus musculus domesticus DNA, BAC clone: B6Ng01-008P21, 5' end.DH845061|Mus musculus domesticus DNA, BAC clone: B6Ng01-008P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,397,149 - 61,398,265)(41,059,106 - 41,059,737)
sequence
gaattcatcactttaatcctaactgtaactgggccatgacacacctaaga
aaaaaattgtcctggtagacttcactgaactgactcttagacacacagga
tactgagagctgcatacatattcactatcataactcataagccacagctt
aaaaccctgaggcaagcaatgcagaagccaatgtccacaaataatcaggt
ttccttagtcacatatccatcatattctgactgcaggagaacagtatttg
ttagaggtatatgggctggcccggggaatcactgaatacagtggttacag
agagaattaagacacatatgatttagaaatagattttctttctaagataa
gccaaagcttggcctttttctccaaaggaaaggaaaatgtcaaaattcct
taaccaaagaaacttcaggattacaagaaaggctacaatccactagataa
atcctacaaaattaggtctcaaagttcggttgggcaagagcttgcacaca
gactcaacagtgcctgctaggatatttggccaatgatccatcatctttat
tgacactatttagtctagaattgtttgggttgttatagaaaactctctat
gcaatataccttcttacagctctaatataccttcctgtgatgaagtttgg
tcggttgctatgcactgtaatgcttaatccatatcctaaggtctagttac
ctcaagatgactgaattctaatgtatgccagcttttgttgtgcaaacttt
gatccctaatttaaaactactggttgaatgaaaatgccaacagcctgtag
ctgagcagaagaaaggtagtcaagacttcagtgcctaggctttgaatctg
aggcagagacaaccacaaagaaagggagaaagggaggaagaaggagatga
caccatatggtaaggggatatgaaaacatggtcatatggcttggcagttg
ggtagagaagtccacagagacagtagttgtatatcaggttttgacatgag
cacacattagcatagatgtgatattttcagctctagtgttcttatggctt
aattaaatataaaagtttatgtcttttatttggaataatgacctg
gaattcattgtttagctctgagcgccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttatgattggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattaatggtgtcttttaccttacagaagctttgtaatttta
tgaggtcccatttgttgattcttgatcttagagcacaagccattgctgtt
ctattcaggaatttttcccctgtgtccatatcttcgaggctttttcccac
tttctcctttatatgtttccctgtctctggttttatgtggagttccttga
tccacttcgatttgaccttagtacaaggagatagggatggatcaattaac
attttttctacgtgataaccaccagttgtgccagcaccatttgtagaaaa
tgctctctttgatggttttagctcccttgtcaaagatcaagagcccatag
gtgtgtgggttcatttctgggttttcaattctattccgttgatctacctg
cctgtcactgtaccagcaccatgcagtttttatcacaattgctccatagt
acagctttaggacaggcatagtgattctccagaggttcttttattattga
gaacagtttttgctattctaggttatttttttattccagaacaatgtgca
aattacctttccaattcattgaagaattgagttggaattttgatagggat
tgcattgaatctgtaaattgcttttggcaagatagtcatttctcctatat
taatcctggcaatccatgagcgtgggagatctttccatcttctgagatct
tctttgatttctttcttcagagacttgaagtacttatcatacagatcttc
acaccagttattttatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61397149_61398265
seq2: B6Ng01-008P21.b_47_1141

seq1  GAATTCATCACTTTAATCCTAACTGTAACTGGGCCATGACACACCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTTTAATCCTAACTGTAACTGGGCCATGACACACCTAAGA  50

seq1  AAAAAATTGTCCTGGTAGACTTCACTGAACTGACTCTTAGACACACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGTCCTGGTAGACTTCACTGAACTGACTCTTAGACACACAGGA  100

seq1  TACTGAGAGCTGCATACATATTCACTATCATAACTCATAAGCCACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAGCTGCATACATATTCACTATCATAACTCATAAGCCACAGCTT  150

seq1  AAAACCCTGAGGCAAGCAATGCAGAAGCCAATGTCCACAAATAATCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGAGGCAAGCAATGCAGAAGCCAATGTCCACAAATAATCAGGT  200

seq1  TTCCTTAGTCACATATCCATCATATTCTGACTGCAGGAGAACAGTATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGTCACATATCCATCATATTCTGACTGCAGGAGAACAGTATTTG  250

seq1  TTAGAGGTATATGGGCTGGCCCGGGGAATCACTGAATACAGTGGTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTATATGGGCTGGCCCGGGGAATCACTGAATACAGTGGTTACAG  300

seq1  AGAGAATTAAGACACATATGATTTAGAAATAGATTTTCTTTCTAAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTAAGACACATATGATTTAGAAATAGATTTTCTTTCTAAGATAA  350

seq1  GCCAAAGCTTGGCCTTTTTCTCCAAAGGAAAGGAAAATGTCAAAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCTTGGCCTTTTTCTCCAAAGGAAAGGAAAATGTCAAAATTCCT  400

seq1  TAACCAAAGAAACTTCAGGATTACAAGAAAGGCTACAATCCACTAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAGAAACTTCAGGATTACAAGAAAGGCTACAATCCACTAGATAA  450

seq1  ATCCTACAAAATTAGGTCTCAAAGTTCGGTTGGGCAAGAGCTTGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACAAAATTAGGTCTCAAAGTTCGGTTGGGCAAGAGCTTGCACACA  500

seq1  GACTCAACAGTGCCTGCTAGGATATTTGGCCAATGATCCATCATCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACAGTGCCTGCTAGGATATTTGGCCAATGATCCATCATCTTTAT  550

seq1  TGACACTATTTAGTCTAGAATTGTTTGGGTTGTTATAGAAAACTCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTATTTAGTCTAGAATTGTTTGGGTTGTTATAGAAAACTCTCTAT  600

seq1  GCAATATACCTTCTTACAGCTCTAATATACCTTCCTGTGATGAAGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATACCTTCTTACAGCTCTAATATACCTTCCTGTGATGAAGTTTGG  650

seq1  TCGGTTGCTATGCACTGTAATGCTTAATCCATATCCTAAGGTCTAGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTGCTATGCACTGTAATGCTTAATCCATATCCTAAGGTCTAGTTAC  700

seq1  CTCAAGATGACTGAATTCTAATGTATGCCAGCTTTTGTTGTGCAAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATGACTGAATTCTAATGTATGCCAGCTTTTGTTGTGCAAACTTT  750

seq1  GATCCCTAATTTAAAACTACTGGTTGAATGAAAATGCCAACAGCCTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTAATTTAAAACTACTGGTTGAATGAAAATGCCAACAGCCTGTAG  800

seq1  CTGAGCAGAAGAAAGGTAGTCAAGACTTCAGTGCCTAGGCTTTGAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGAAGAAAGGTAGTCAAGACTTCAGTGCCTAGGCTTTGAATCTG  850

seq1  AGGCAGAGACAACCACAAAGAAAGGGAG-AAGGGAGGAAGAAGGAAGATG  899
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  AGGCAGAGACAACCACAAAGAAAGGGAGAAAGGGAGGAAGAAGG-AGATG  899

seq1  ACACCATATGGTAAGGGGATAATGAAAACATGGTCATAAGGGCTTGGCAG  949
      |||||||||||||||||||| |||||||||||||||| | ||||||||||
seq2  ACACCATATGGTAAGGGGAT-ATGAAAACATGGTCAT-ATGGCTTGGCAG  947

seq1  TTGGGGTAGGAGAAGTCCACAGAGAACAAGGTAAGTTGTATATCAGGGTT  999
      || ||||| ||||||||||||||| |||  || ||||||||||||||  |
seq2  TT-GGGTA-GAGAAGTCCACAGAG-ACA--GT-AGTTGTATATCAGG--T  989

seq1  TTTGACAATGAAGCACACAAATTAGCATAGATGTTGATATTTTTCCAGCT  1049
      |||||| ||| |||||||  ||||||||||||| |||||||||  |||||
seq2  TTTGAC-ATG-AGCACAC--ATTAGCATAGATG-TGATATTTT--CAGCT  1032

seq1  CTAGTGTTCTTATGGCTTAATATAAATATAAAAGTTTTATGTCTTTTATT  1099
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CTAGTGTTCTTATGGCTTAAT-TAAATATAAAAG-TTTATGTCTTTTATT  1080

seq1  TGAGAATTAAATGACCTG  1117
      || ||||  |||||||||
seq2  TG-GAAT--AATGACCTG  1095

seq1: chr3_41059106_41059737
seq2: B6Ng01-008P21.g_69_693 (reverse)

seq1  AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  50
      |||||| ||||||| ||||||||| |||||  ||||||||||||||||||
seq2  AATCACTATGCCTGTCCTAAAGCTGTACTATGGAGCAATTGTGATAAAAA  50

seq1  CTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATT  100
      ||||||||| |||||| |||||||| || | ||| ||| |||||||||||
seq2  CTGCATGGTGCTGGTACAGTGACAGGCAGGTAGATCAACGGAATAGAATT  100

seq1  GAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAA  150
      ||| || |||||| ||| |||||||||||||| | ||||||||| |||||
seq2  GAAAACCCAGAAATGAACCCACACACCTATGGGCTCTTGATCTTTGACAA  150

seq1  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  200
      ||||||||||||||||         ||||| ||||||||| |||||||||
seq2  GGGAGCTAAAACCATC---------AAAGAGAGCATTTTCTACAAATGGT  191

seq1  GCTGGCACAACTGGTTGTTATCATGTAG-AAGAATGCGAATTGATCCACT  249
      ||||||||||||||| ||||||| |||| || ||||  ||||||||||  
seq2  GCTGGCACAACTGGTGGTTATCACGTAGAAAAAATGTTAATTGATCCATC  241

seq1  CCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACA  299
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CCTATCTCCTTGTACTAAGGTCAAATCGAAGTGGATCAAGGAACTCCACA  291

seq1  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTT  349
      ||||||||||||||  ||||| |||| ||||||||||||| |||||||| 
seq2  TAAAACCAGAGACAGGGAAACATATAAAGGAGAAAGTGGGAAAAAGCCTC  341

seq1  GAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTG  399
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GAAGATATGGACACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTG  391

seq1  TGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCT  449
      |||| ||||||  |||||  |||||||||||||||| ||| | |||||||
seq2  TGCTCTAAGATCAAGAATCAACAAATGGGACCTCATAAAATTACAAAGCT  441

seq1  TCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGAT  498
      |||| |||| |||||||||| | ||||||||||||||| |||||||||||
seq2  TCTGTAAGGTAAAAGACACCATTAATAAGACAAAAAGGCCACCAACAGAT  491

seq1  TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAA  548
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  TGGGAAAGGATCTTTACCAATCATAAATCAGATAGGGGACTAATATCCAA  541

seq1  TATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCA  598
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCA  591

seq1  TTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  632
      ||||||||||| |||||||||||||||| |||||
seq2  TTAAAAAATGGCGCTCAGAGCTAAACAATGAATT  625