BAC Information

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BAC

Clone NameB6Ng01-009N07
Chromosome3 (Build37)
Map Location 92,026,474 - 92,027,615
singlet/doubletsinglet
Overlap geneLOC100042999
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a
Downstream geneLOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N07.bB6Ng01-009N07.g
ACCDH845667DH845668
length1,1421,121
definitionDH845667|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N07, 5' end.DH845668|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagtggttgtacaagcttgcaatcccaccaacaatggaggag
tgttcctctttctccacatccttgcagcatctgctgtcacctgaattttt
gatcttagccattctgactggtgtgagatggaatctcagggttgttttaa
tttgcatttctctgatgattaaggatgttgaacatttattcaggtgtttc
tcagccttttggtattccttgggtgagaattctttgttcagctctgagcc
ccatcttttaagggggctatttgattttctggagtccaccctcttgagtt
ctttatatatattggatattagtcccctatctgatttaagataggtaaag
atcctttcccaatctgttggtggtctttttgtcttattgacagtgtcttt
tgcctttcagaagctttgcagtttcatgaggtcccatttgtcaatcctcg
atcttaaagcacaagccattgctgttctattcaggaattttttccctgtg
cccatatcttcgaggcttatccccactttctcctctataagtttcagtgt
ctctggttttatgtggagttccttgatctacttagatttgaccttagtac
aaggagagaggaatgggtcgattcgcattcttctacatgataacaaccag
ttgtgccagcaccatttgttgaaaatgctgtctttttcccactggattgt
tttagctcccttgtagaagatcaagtgaccataggtgtgtgggttcattt
ctgggtcttcaattctattccattggtctacttgtctgtcagtataccag
taccatgcagttttgatcataattgctctgtagtaaagctttaggtcagg
catggtgattccaccagaggtacttttatccttgagaagagcttttgcta
tcctaggtttttgtatcccagatgaatttgcagattgctctttctaattc
gtggagatgagtggaatttgatggggattgcatgaatctgtagatgcttt
gcagatagccatttacatcttgatcttgtcaatcatgagcatgggagatc
tttcattcttctgagatattccttatttcttcttcaggaactgggtttac
catccaatctttacttcccttgttaagctggccaaaatttat
gaattcaaacaatctggaggcataagcctcaaataaattctttcccatat
aaataaataaataaattaattaattaattaatagaatacatctcttaata
ttgtatgacatgtcaaagaaactaatctgtaataactgtagacaaatatg
gtatattattgaatttagctaagaagaggaaatcaaatactatttgattt
caattatatttcatctataggaagttgatatcacaaaggtttatacaatg
atgttggtttccatgggaacattatgggtgagagaaggatgtggaaaagt
ttctgaactaaatttcaatcaattcaagcatgagttcaatgaagtattct
atatgttaaaatatctatcaaatataattttgttttcaccataaaagatg
ataaatgttccaggtatgaaatgttaatctgaatcattgtacccctcttt
atatatactatattgaaatacattaaaaatatagaagaaatatccaatta
aaagtaatttgatactataagagacccttatcacaatgacatacacagat
agaagttgtaaaaacccatggggattgagttatttccttttaaatgatta
taaaatcaaacaatatataaaactaaaagttcttagtattgaaactatca
gaacacagaatttaaagcaaaggcagttataacatatttataggtatgaa
tgcctacaacatccaatgtgggattacagggttctacctttagacaaaga
agtataggaaagtaatgactctagcaaaatggcattggtcccttctttgg
atgaacatgggtcagcctttaaaactagtggaatcaggaatttgtattat
atatttttacgcacatgtgtgcaacacaaaataacagcaagaaaggaggt
tagcacataagtgttggggacacgtgggagttgatcaggggaatcctagt
cagaagagactggaaggaataagatgggcttaaagtttatgtaggttttt
tttttcatcaaggcttaatttaattttaaaatatatttaactaattaaag
caagattggcagctaaattggcacctaattgtcaatgagcatctcattag
taaatttattatccactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92026474_92027615
seq2: B6Ng01-009N07.g_66_1186 (reverse)

seq1  TTTCAGTGGTTTATTAAATTTTACATAATGAGATGCTCATTTTACAAATT  50
      ||||||||| | ||  || ||||| |||||||||||||| || ||||  |
seq2  TTTCAGTGGATAAT--AAATTTAC-TAATGAGATGCTCA-TTGACAA--T  44

seq1  AAGGTTGCCCAATTTATGCTGCCAATTCTTTGCTTTAATTTTAATTTTAA  100
       ||||   |||||||| |||||||||   |||||||||||   | ||  |
seq2  TAGGT--GCCAATTTA-GCTGCCAAT--CTTGCTTTAATT---AGTT--A  84

seq1  ATTATATTTTAAAATTTAAATTAAGCTTTTGATTGAAAAAAAAAAACCTT  150
      | |||||||||||| |||||||||||  |||| ||||||||||||  | |
seq2  AATATATTTTAAAA-TTAAATTAAGC-CTTGA-TGAAAAAAAAAA--CCT  129

seq1  ACAT-AACTTTAGCCCCATCTTTATTCCTTCCAGTCTCTTCTGACTAGG-  198
      |||| |||||||  |||||| |||||||||||||||||||||||||||| 
seq2  ACATAAACTTTAAGCCCATC-TTATTCCTTCCAGTCTCTTCTGACTAGGA  178

seq1  TTCCCCTGATCACTTCCCACGTGTCCCCAACACTTATGTTGCTAACCTCC  248
      ||||||||||||  |||||||||||||||||||||||| |||||||||||
seq2  TTCCCCTGATCAACTCCCACGTGTCCCCAACACTTATG-TGCTAACCTCC  227

seq1  TTTTCTTGCTGTTATTTTGTGTTGCACACATGTGCGTAAAAATATATAAA  298
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -TTTCTTGCTGTTATTTTGTGTTGCACACATGTGCGTAAAAATATAT-AA  275

seq1  TACAAATTCCTGATTCCACTAGTTTT-AAGGCTGA-CCATGTTCATCCAA  346
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TACAAATTCCTGATTCCACTAGTTTTAAAGGCTGACCCATGTTCATCCAA  325

seq1  AGAAGGGACCAATGCCATTTTGCTAGAGTCATTACTTTCCTATACTTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACCAATGCCATTTTGCTAGAGTCATTACTTTCCTATACTTCTT  375

seq1  TGTCTAAAGGTAGAACCCTGTAATCCCACATTGGATGTTGTAGGCATTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGGTAGAACCCTGTAATCCCACATTGGATGTTGTAGGCATTCA  425

seq1  TACCTATAAATATGTTATAACTGCCTTTGCTTTAAATTCTGTGTTCTGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAAATATGTTATAACTGCCTTTGCTTTAAATTCTGTGTTCTGAT  475

seq1  AGTTTCAATACTAAGAACTTTTAGTTTTATATATTGTTTGATTTTATAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATACTAAGAACTTTTAGTTTTATATATTGTTTGATTTTATAAT  525

seq1  CATTTAAAAGGAAATAACTCAATCCCCATGGGTTTTTACAACTTCTATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAGGAAATAACTCAATCCCCATGGGTTTTTACAACTTCTATCT  575

seq1  GTGTATGTCATTGTGATAAGGGTCTCTTATAGTATCAAATTACTTTTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTCATTGTGATAAGGGTCTCTTATAGTATCAAATTACTTTTAAT  625

seq1  TGGATATTTCTTCTATATTTTTAATGTATTTCAATATAGTATATATAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTCTTCTATATTTTTAATGTATTTCAATATAGTATATATAAAG  675

seq1  AGGGGTACAATGATTCAGATTAACATTTCATACCTGGAACATTTATCATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTACAATGATTCAGATTAACATTTCATACCTGGAACATTTATCATC  725

seq1  TTTTATGGTGAAAACAAAATTATATTTGATAGATATTTTAACATATAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTGAAAACAAAATTATATTTGATAGATATTTTAACATATAGAA  775

seq1  TACTTCATTGAACTCATGCTTGAATTGATTGAAATTTAGTTCAGAAACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATTGAACTCATGCTTGAATTGATTGAAATTTAGTTCAGAAACTT  825

seq1  TTCCACATCCTTCTCTCACCCATAATGTTCCCATGGAAACCAACATCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATCCTTCTCTCACCCATAATGTTCCCATGGAAACCAACATCATT  875

seq1  GTATAAACCTTTGTGATATCAACTTCCTATAGATGAAATATAATTGAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACCTTTGTGATATCAACTTCCTATAGATGAAATATAATTGAAAT  925

seq1  CAAATAGTATTTGATTTCCTCTTCTTAGCTAAATTCAATAATATACCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTATTTGATTTCCTCTTCTTAGCTAAATTCAATAATATACCATA  975

seq1  TTTGTCTACAGTTATTACAGATTAGTTTCTTTGACATGTCATACAATATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTACAGTTATTACAGATTAGTTTCTTTGACATGTCATACAATATT  1025

seq1  AAGAGATGTATTCTATTAATTAATTAATTAATTTATTTATTTATTTATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGTATTCTATTAATTAATTAATTAATTTATTTATTTATTTATAT  1075

seq1  GGGAAAGAATTTATTTGAGGCTTATGCCTCCAGATTGTTTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAATTTATTTGAGGCTTATGCCTCCAGATTGTTTGAATTC  1121