BAC Information

Click to search

BAC

Clone NameB6Ng01-010A10
Chromosome3 (Build37)3 (Build37)
Map Location 91,480,939 - 91,482,03691,579,523 - 91,580,618
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneS100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010A10.bB6Ng01-010A10.g
ACCDH845813DH845814
length1,0781,085
definitionDH845813|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A10, 5' end.DH845814|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,480,939 - 91,482,036)(91,579,523 - 91,580,618)
sequence
gaattcctagtttggcggggggggggataattcaattatgcctcaagcat
catcatatctttcctattttatggttcaagcaatgctaaatggcccaagt
cccccacatatctacttagtcaatgggaacactgtagtgctacataccaa
gggtgttgtttattatcttgtctaaaatttcagtgcacataatggcacac
actggtgcaacagaaagatcttgatatagaaacatgaaattatattggct
cagagactctaactgactcctttaacaagatccacattctatgtcctgga
ctaaaatttggaacatgctccctaaccttacttttcacttaaatttaaca
ccgttttcaagctttgcagacatctttgataaatatggtaaagccaacca
ctctatgggaaaagtttccttgtctctatgacaaaatcaccacggttaac
attctaggttttgggaatctgactttttacaatctttatttctgacactg
agactcaggtgttctggacagtaggtaagactgctgaagaaggagcttat
atatgtcttcagaatatttgcttgagttgtaagaggagaaggtaattggc
aatgatcctgagggatagaagttagagaatagtctacaataccaaagata
aggacattaatccagagccattgaaatatctttctgataggataaactca
ggaccataccatgtggctgacattgatctcaagaagatgcttcacttatg
tggcagaagagaaacctgtgcaaccaggggatatattcagagcaatagtg
acataaagatataccatgacaccatatttgcatcctgagtctggcagagt
aagactgcactgctcctttctcctgccagggtacacatagcttaagttac
caccccaaccctgctacccaagagttgtcacatagcctgttgtcaggttc
agttaacttcttctcttaagaagaggagatctagcacataaattccatcc
atgaaatgtgcattccagcattttgatcccggcaattattaacccccgaa
aattctacccatctctccaagattatat
gaattcttattgctgtatcaagacagacagaggatgtctacaggaatttt
ctgtgcagaggtgttcttgctttaaccctccatgaattctactccctaaa
ctgacacaggaattgttaacaaatcatgtgccaggtacaaagtgtattag
gcaaggtgtcccagcaagagaatgtaagatctgcagctggtggtgctctc
agactcactaagatcaatcaccagtacacttaagtcccatcacatctatt
accaaatgtttattacctagaaagttccaccactttaggagtttatactg
gcattttcttctcaggatttccaagtcagtagcttcagtgggattcactc
attagttacctccaggggaagtaatatggagaaactaaattagaatactg
gagggaacattcaattctctgcctgagacttgtgtttaaatcccttctag
ttcctgtgtttgcagcctctgcaacattaaaagccattaaccttttgcca
ggccagttttcaaggaagatgccttttattcaggctaatttttatagaca
aatgttggatacttctagacaaactaactgtcttatttttctgcaaaaca
gagtcctagctctgaatttgaaaggctggcagaaccaaattgcaaagtat
taacctctgtttagtatgtttcttcatgagcacaaacctcttcactttta
tactcaaatgggaatcctgggccagttttactatgcatttgcattctgct
cactcagtgtgcaccctaatcctatcccgggacactatcaatgctaacag
tcatctttcttccaggaagtataggaaagtcctttaagtagactatagaa
tgaaccaaaggatcacagtgttgaagaggcttttgacatgataagaagaa
tgggaatgctgtaatataggagatgacacatgctttttacattagcatca
tcacattgatgtgtctggccatgaagagggtggacgtagatatgacagca
ctcctaagcaagagtctgcacctttcttatatcccaccagtgtttctgaa
attaagaacagaaactgaattatgtttgggtctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91480939_91482036
seq2: B6Ng01-010A10.b_47_1124

seq1  GAATTCCTAGTTTGGCGGGGGGGGGGATAATTCAATTATGCCTCAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTTGGCGGGGGGGGGGATAATTCAATTATGCCTCAAGCAT  50

seq1  CATCATATCTTTCCTATTTTATGGTTCAAGCAATGCTAAATGGCCCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATCTTTCCTATTTTATGGTTCAAGCAATGCTAAATGGCCCAAGT  100

seq1  CCCCCACATATCTACTTAGTCAATGGGAACACTGTAGTGCTACATACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACATATCTACTTAGTCAATGGGAACACTGTAGTGCTACATACCAA  150

seq1  GGGTGTTGTTTATTATCTTGTCTAAAATTTCAGTGCACATAATGGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTTTATTATCTTGTCTAAAATTTCAGTGCACATAATGGCACAC  200

seq1  ACTGGTGCAACAGAAAGATCTTGATATAGAAACATGAAATTATATTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCAACAGAAAGATCTTGATATAGAAACATGAAATTATATTGGCT  250

seq1  CAGAGACTCTAACTGACTCCTTTAACAAGATCCACATTCTATGTCCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTCTAACTGACTCCTTTAACAAGATCCACATTCTATGTCCTGGA  300

seq1  CTAAAATTTGGAACATGCTCCCTAACCTTACTTTTCACTTAAATTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTGGAACATGCTCCCTAACCTTACTTTTCACTTAAATTTAACA  350

seq1  CCGTTTTCAAGCTTTGCAGACATCTTTGATAAATATGGTAAAGCCAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTCAAGCTTTGCAGACATCTTTGATAAATATGGTAAAGCCAACCA  400

seq1  CTCTATGGGAAAAGTTTCCTTGTCTCTATGACAAAATCACCACGGTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGGAAAAGTTTCCTTGTCTCTATGACAAAATCACCACGGTTAAC  450

seq1  ATTCTAGGTTTTGGGAATCTGACTTTTTACAATCTTTATTTCTGACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGTTTTGGGAATCTGACTTTTTACAATCTTTATTTCTGACACTG  500

seq1  AGACTCAGGTGTTCTGGACAGTAGGTAAGACTGCTGAAGAAGGAGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGGTGTTCTGGACAGTAGGTAAGACTGCTGAAGAAGGAGCTTAT  550

seq1  ATATGTCTTCAGAATATTTGCTTGAGTTGTAAGAGGAGAAGGTAATTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTCAGAATATTTGCTTGAGTTGTAAGAGGAGAAGGTAATTGGC  600

seq1  AATGATCCTGAGGGATAGAAGTTAGAGAATAGTCTACAATACCAAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCTGAGGGATAGAAGTTAGAGAATAGTCTACAATACCAAAGATA  650

seq1  AGGACATTAATCCAGAGCCATTGAAATATCTTTCTGATAGGATAAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTAATCCAGAGCCATTGAAATATCTTTCTGATAGGATAAACTCA  700

seq1  GGACCATACCATGTGGCTGACATTGATCTCAAGAAGATGCTTCACTTAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACCATACCATGTGGCTGACATTGATCTCAAGAAGATGCTTCACTTATG  750

seq1  TGGCAGAAGAGAAACCTGTGCAACCAGGGGATATATTCAGAGCAATAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAGAGAAACCTGTGCAACCAGGGGATATATTCAGAGCAATAGTG  800

seq1  ACATAAAGATATACCATGACACCATAAATTGCATCCTGAGTCTGGCAGGA  850
      ||||||||||||||||||||||||| | ||||||||||||||||||| ||
seq2  ACATAAAGATATACCATGACACCAT-ATTTGCATCCTGAGTCTGGCA-GA  848

seq1  GTAAGACTGCACTGCTCC-TTCTCCTGCCAGGGTACACATAGCCTTAAGT  899
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  GTAAGACTGCACTGCTCCTTTCTCCTGCCAGGGTACACATAG-CTTAAGT  897

seq1  TACCACCCCAACCCCTGCTACCCAAGAGGTGGTCACATAGCCTGTTGGCC  949
      ||||||||||| ||||||||||||||| || ||||||||||||||| | |
seq2  TACCACCCCAA-CCCTGCTACCCAAGA-GTTGTCACATAGCCTGTT-GTC  944

seq1  AGGTTTCAGGTTAAACTTCCTCTCTTAAGAAGAGGTAGATCTAGCACATG  999
      ||| |||||  | |||||| ||||||||||||||| ||||||||||||| 
seq2  AGG-TTCAG--TTAACTTCTTCTCTTAAGAAGAGG-AGATCTAGCACAT-  989

seq1  AAATTCCATTCATGAAAATGTGGCATTAGCAGCAATTTGATCCCAGGCAA  1049
      ||||||||| |||| |||||| |||||  ||||| ||||||||| |||||
seq2  AAATTCCATCCATG-AAATGT-GCATT-CCAGCATTTTGATCCC-GGCAA  1035

seq1  TTATATAAACTCACCCAGAAAATTCATACCCA-CTCTCCAAGATTTATAT  1098
      |||| |||     ||| |||||||| |||||| |||||||||| ||||||
seq2  TTAT-TAA----CCCCCGAAAATTC-TACCCATCTCTCCAAGA-TTATAT  1078

seq1: chr3_91579523_91580618
seq2: B6Ng01-010A10.g_67_1151

seq1  GAATTCTTATTGCTGTATCAAGACAGACAGAGGATGTCTACAGGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGCTGTATCAAGACAGACAGAGGATGTCTACAGGAATTTT  50

seq1  CTGTGCAGAGGTGTTCTTGCTTTACCCCTCCATGAATTCTACTCCCTAAA  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGTGCAGAGGTGTTCTTGCTTTAACCCTCCATGAATTCTACTCCCTAAA  100

seq1  CTGACACAGGGATTGTTAGCAAATCATGTGTCAGGTACAAAGTGTATTAG  150
      |||||||||| ||||||| ||||||||||| |||||||||||||||||||
seq2  CTGACACAGGAATTGTTAACAAATCATGTGCCAGGTACAAAGTGTATTAG  150

seq1  GCAAGGTGTCCCAGCAAGAGAATGTAAGATCTGCAGCTGGTGGTGCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGTCCCAGCAAGAGAATGTAAGATCTGCAGCTGGTGGTGCTCTC  200

seq1  AGACTCACTAAGATCAATCACCAGTACACTTAA-CCCCATCACATCTATT  249
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  AGACTCACTAAGATCAATCACCAGTACACTTAAGTCCCATCACATCTATT  250

seq1  ACCAAATGTTTATTACCTAGAAAGTTCCACCACTTTAGGAGTCCATACTG  299
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  ACCAAATGTTTATTACCTAGAAAGTTCCACCACTTTAGGAGTTTATACTG  300

seq1  GCATTTTCTTCTCAGGATTTCCCAGTCAGTAGCTTCAGTGGGAGTCACTC  349
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GCATTTTCTTCTCAGGATTTCCAAGTCAGTAGCTTCAGTGGGATTCACTC  350

seq1  ATTAGTTGCCTCCAGGGGAAGTAATGTGGAGAAATTAACTTAGAATACTG  399
      ||||||| ||||||||||||||||| |||||||| ||| |||||||||||
seq2  ATTAGTTACCTCCAGGGGAAGTAATATGGAGAAACTAAATTAGAATACTG  400

seq1  GAGGGAACATTCAATTCTCTGCCTGAGACGTGTGTTACAATTCCTTGTAG  449
      ||||||||||||||||||||||||||||| ||||||  ||| |||| |||
seq2  GAGGGAACATTCAATTCTCTGCCTGAGACTTGTGTTTAAATCCCTTCTAG  450

seq1  TTCCTGTGTTTGCAGCCTCTGCAACATTAAAAGCCATTAACCTTTTGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTTTGCAGCCTCTGCAACATTAAAAGCCATTAACCTTTTGCCA  500

seq1  GGCCAGTTTTCAAGGAAGATGCCTTTTATTCAGGCTAATTTTTATAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTTTTCAAGGAAGATGCCTTTTATTCAGGCTAATTTTTATAGACA  550

seq1  AATGTTGGATACTTCTAGACAAACTAACTGTCTTATTTTTCTGCAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGATACTTCTAGACAAACTAACTGTCTTATTTTTCTGCAAAACA  600

seq1  GAGTCCTAGCTCTGAATTTGAAAGGCTGGCAGAACCAAATTGCAAAGTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAGCTCTGAATTTGAAAGGCTGGCAGAACCAAATTGCAAAGTAT  650

seq1  TAACCTCTGTTTAGTATGTTTCTTCATGAGCACTAACCTCTACACTTTTA  699
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TAACCTCTGTTTAGTATGTTTCTTCATGAGCACAAACCTCTTCACTTTTA  700

seq1  TACTCAAATGGGAATCTTGGGTCAGTTTTACTATGCATTTGCATTCTGCT  749
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TACTCAAATGGGAATCCTGGGCCAGTTTTACTATGCATTTGCATTCTGCT  750

seq1  CAATCACTGTGCACCCTAATCCTTTCCCAGGATATTATCAATGCTAAGAG  799
      || ||| |||||||||||||||| |||| ||| | |||||||||||| ||
seq2  CACTCAGTGTGCACCCTAATCCTATCCCGGGACACTATCAATGCTAACAG  800

seq1  TCATCTTTGTTCCAGGAAGTACATGAAAGTCCTTTAAGTAGACTATAGAA  849
      |||||||| |||||||||||| | ||||||||||||||||||||||||||
seq2  TCATCTTTCTTCCAGGAAGTATAGGAAAGTCCTTTAAGTAGACTATAGAA  850

seq1  TGAACCAAAGGATCACAGCATTGAAGAGGTTTTGGA---TATAAGAAGAA  896
      ||||||||||||||||||  ||||||||| ||| ||    ||||||||||
seq2  TGAACCAAAGGATCACAGTGTTGAAGAGGCTTTTGACATGATAAGAAGAA  900

seq1  TGGGAATGCTGTAATATAGGAAGATGAACAACAATGCTTGTGAACATTAG  946
      |||||||||||||||||||| ||||| |||   |||||| |  |||||||
seq2  TGGGAATGCTGTAATATAGG-AGATG-ACA--CATGCTT-TTTACATTAG  945

seq1  CATTATCACATCGAAGTGTCTGGCCTTGAAGAGGGTGGACATAGATATGA  996
      ||| ||||||| || |||||||||| |||||||||||||| |||||||||
seq2  CATCATCACATTGATGTGTCTGGCCATGAAGAGGGTGGACGTAGATATGA  995

seq1  CCAGCACTCCTAAGCAAGAGTTCTGCCCACCTTTCTTATATCCCACCAGT  1046
       ||||||||||||||||||| ||||  |||||||||||||||||||||||
seq2  -CAGCACTCCTAAGCAAGAG-TCTG--CACCTTTCTTATATCCCACCAGT  1041

seq1  GTTTCAGAAATTTATTGAAACAGACACTGAAATTATGTTTGGGGATCTAA  1096
      ||||| |||||| |    |||||| |||| |||||||||||||  |||||
seq2  GTTTCTGAAATTAA---GAACAGAAACTG-AATTATGTTTGGG--TCTAA  1085