BAC Information

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BAC

Clone NameB6Ng01-011I14
Chromosome3 (Build37)
Map Location 93,358,069 - 93,474,849
singlet/doubletdoublet
Overlap geneS100a10, EG433623, Tdpoz2, Tdpoz1
Upstream geneIvl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11
Downstream geneLOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011I14.bB6Ng01-011I14.g
ACCDH846893DH846894
length1,094812
definitionDH846893|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I14, 5' end.DH846894|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,473,749 - 93,474,849)(93,358,069 - 93,358,877)
sequence
gaattccctcttcacagactgctgtctgttggtagctggccatgaattca
gggctcacaaggcaatcctagcagctcgctctccagttttcagagccatg
tttgaacatgaaatgaaggagagtctaaagacccccattaagattcataa
cctgaatccccaagtcttcaaggagatgatgggtttcatctacacgggga
aggcaccacacctccacagccactccatggcctgtgatgtgctgccagct
gctgacaagtatggcctggtgagcctgaaggtcctgtgtgaggatgccct
ttgcaggaacctctctgtgaagaatgctacacacactctcatcctggctg
acctgcacagcacagagaagctgaagactcaggcccttgatttcattgcc
tactatgcctctgaggtctgtgagacctcagagtggaagtcgatattgga
gtcccatccccacttggtggctgaagcattccagtccctggcttctgcac
agtgttctttcttggagccgaaagtgatctcaggatctaaccagctatga
tttacatctttcttccaagagcaacaaacaacaacgtctagtgttgtgac
caatgacttctggttagactatggtattgcggaagaatttacagtgaatc
tggggcaaggcatcatggtggatgaggatttaaatcacctgtaatatggt
taaatagtgggtgtaggaagggcagcactgcagtctgggaccttctacct
gacatctacacttttgatattcttgtgtgttttttgtctaatgtcttgca
actgaatatttaggtgctggccctaggcatggggctaattgagtttcttt
tgaagaaacctatctgcagtgaactgagcagaacagatactggtcagagg
aaaggagaaatcaaacatgagtgttttctcatcgagaaggaaaaccagtg
gtagagtttcttttaagacttattttgtgggactccagctttaaaagcat
aactgctctctcagagactctttgtttaggttcccagcaccaactagagt
tttcagccatctgtaacttgttattcgagatctgaagctctctt
gaattccctaattctgtttatccctttggaatctctcatcctttctagga
cttcccctgggaacaggggaaaccccagtgctagggactgggctgtgtca
ccaataactgcatttaatcccaaaccacaaataatgttaagtatcaggga
agggtgtggttgtcagttaggatacacttcagtcgtctctaaatatcttc
cagaagtttcttccaaagagctttttagagccaagtagagtcaagaaggg
ggctccgaaacagatcttagtaatattggccacagctgaaactatcgacc
aagcaaaatcacaaactgtaccaggaaaggtgaaccctgtaacaaagaag
ctcctgaagctgacaagcactaggacacgccctgatcctcaccactcagt
ggtggcaaggctaggctgaagcccaggggccttgcttctgcactcaacac
aggcgaccccaagaccaggtcctagagcaagctaggtgtagaagcgttcc
tcctgcttatctaggaaattattcctaaccctgcaggttctcgcagaggc
tcttggctctggttctggccattgtgcctcccgagacggctggattctta
tttctacactcacccactttctaaaatcaaacctgagaggaagggcacgg
ccctggatgagaatgccctgaaatactaagagcattcttccgcagggacg
tttacaatagggctgtccctgggggacgggcaaagttagtctgttggcag
agtgggaagggtgtgtgtgtgcgtgtgtgttgcctttgtgttttgggaga
gagaaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93473749_93474849
seq2: B6Ng01-011I14.b_46_1139 (reverse)

seq1  AAGAGGGCTTCAGATCCTCTGAATAACCAGTTACAGGTGGCTGAAAACTC  50
      ||||| ||||||||| ||| ||||||| |||||||| |||||||||||||
seq2  AAGAGAGCTTCAGAT-CTC-GAATAACAAGTTACAGATGGCTGAAAACTC  48

seq1  CTCTGTGTGTGCTGGGAACTTAAACAGAG-TTCTCTGAGAGAGCAGTAAT  99
          ||  ||||||||||| |||||| ||  |||||||||||||||| | 
seq2  --TAGTTGGTGCTGGGAACCTAAACAAAGAGTCTCTGAGAGAGCAGTTA-  95

seq1  TGCTTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAAGAAACTCTA  149
      |||||||| |||||   ||||||||||||||||||  |||||||||||||
seq2  TGCTTTTAAAGCTGGAGTCCCACAAAATAAGTCTT--AAAAGAAACTCTA  143

seq1  -CACTGTTTTTCCTTCTCTGATGAGAAAACACTCATGTTTGATTTCTCCT  198
       ||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CCACTGGTTTTCCTTCTC-GATGAGAAAACACTCATGTTTGATTTCTCCT  192

seq1  TTCCTCTGACCAGTTATCTGTTCTGCTCAGTTCACTGCAGATAGGTTTCT  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGACCAG-TATCTGTTCTGCTCAGTTCACTGCAGATAGGTTTCT  241

seq1  TC-AAAGAAACTCAGTTAG-CCCATGCCTAGGGCCAGCACCTAAATTATT  296
      || ||||||||||| |||| ||||||||||||||||||||||||| ||||
seq2  TCAAAAGAAACTCAATTAGCCCCATGCCTAGGGCCAGCACCTAAA-TATT  290

seq1  CAGTTTGCAAGACATTAGACAAAAAACACACAAGAATATCAAAAGTGTAG  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-TTGCAAGACATTAGACAAAAAACACACAAGAATATCAAAAGTGTAG  339

seq1  ATGTCAGGTAGAAGGTCCCAGACTGCAGTGCTGCCCTTCCTACACCCACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTAGAAGGTCCCAGACTGCAGTGCTGCCCTTCCTACACCCACT  389

seq1  ATTTAACCATATTACAGGTGATTTAAATCCTCATCCACCATGATGCCTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCATATTACAGGTGATTTAAATCCTCATCCACCATGATGCCTTG  439

seq1  CCCCAGATTCACTGTAAATTCTTCCGCAATACCATAGTCTAACCAGAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATTCACTGTAAATTCTTCCGCAATACCATAGTCTAACCAGAAGT  489

seq1  CATTGGTCACAACACTAGACGTTGTTGTTTGTTGCTCTTGGAAGAAAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCACAACACTAGACGTTGTTGTTTGTTGCTCTTGGAAGAAAGAT  539

seq1  GTAAATCATAGCTGGTTAGATCCTGAGATCACTTTCGGCTCCAAGAAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCATAGCTGGTTAGATCCTGAGATCACTTTCGGCTCCAAGAAAGA  589

seq1  ACACTGTGCAGAAGCCAGGGACTGGAATGCTTCAGCCACCAAGTGGGGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCAGAAGCCAGGGACTGGAATGCTTCAGCCACCAAGTGGGGAT  639

seq1  GGGACTCCAATATCGACTTCCACTCTGAGGTCTCACAGACCTCAGAGGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCAATATCGACTTCCACTCTGAGGTCTCACAGACCTCAGAGGCA  689

seq1  TAGTAGGCAATGAAATCAAGGGCCTGAGTCTTCAGCTTCTCTGTGCTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGCAATGAAATCAAGGGCCTGAGTCTTCAGCTTCTCTGTGCTGTG  739

seq1  CAGGTCAGCCAGGATGAGAGTGTGTGTAGCATTCTTCACAGAGAGGTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCCAGGATGAGAGTGTGTGTAGCATTCTTCACAGAGAGGTTCC  789

seq1  TGCAAAGGGCATCCTCACACAGGACCTTCAGGCTCACCAGGCCATACTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGGCATCCTCACACAGGACCTTCAGGCTCACCAGGCCATACTTG  839

seq1  TCAGCAGCTGGCAGCACATCACAGGCCATGGAGTGGCTGTGGAGGTGTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTGGCAGCACATCACAGGCCATGGAGTGGCTGTGGAGGTGTGG  889

seq1  TGCCTTCCCCGTGTAGATGAAACCCATCATCTCCTTGAAGACTTGGGGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCCCGTGTAGATGAAACCCATCATCTCCTTGAAGACTTGGGGAT  939

seq1  TCAGGTTATGAATCTTAATGGGGGTCTTTAGACTCTCCTTCATTTCATGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTATGAATCTTAATGGGGGTCTTTAGACTCTCCTTCATTTCATGT  989

seq1  TCAAACATGGCTCTGAAAACTGGAGAGCGAGCTGCTAGGATTGCCTTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATGGCTCTGAAAACTGGAGAGCGAGCTGCTAGGATTGCCTTGTG  1039

seq1  AGCCCTGAATTCATGGCCAGCTACCAACAGACAGCAGTCTGTGAAGAGGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAATTCATGGCCAGCTACCAACAGACAGCAGTCTGTGAAGAGGG  1089

seq1  AATTC  1101
      |||||
seq2  AATTC  1094

seq1: chr3_93358069_93358877
seq2: B6Ng01-011I14.g_66_877

seq1  GAATTCCCTAATTCTGTTTATCCCTTTGGAATCTCTCATCCTTTCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATTCTGTTTATCCCTTTGGAATCTCTCATCCTTTCTAGGA  50

seq1  CTTCCCCTGGGAACAGGGGAAACCCCAGTGCTAGGGACTGGGCTGTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTGGGAACAGGGGAAACCCCAGTGCTAGGGACTGGGCTGTGTCA  100

seq1  CCAATAACTGCATTTAATCCCAAACCACAAATAATGTTAAGTATCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACTGCATTTAATCCCAAACCACAAATAATGTTAAGTATCAGGGA  150

seq1  AGGGTGTGGTTGTCAGTTAGGATACACTTCAGTCGTCTCTAAATATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGGTTGTCAGTTAGGATACACTTCAGTCGTCTCTAAATATCTTC  200

seq1  CAGAAGTTTCTTCCAAAGAGCTTTTTAGAGCCAAGTAGAGTCAAGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTCTTCCAAAGAGCTTTTTAGAGCCAAGTAGAGTCAAGAAGGG  250

seq1  GGCTCCGAAACAGATCTTAGTAATATTGGCCACAGCTGAAACTATCGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGAAACAGATCTTAGTAATATTGGCCACAGCTGAAACTATCGACC  300

seq1  AAGCAAAATCACAAACTGTACCAGGAAAGGTGAACCCTGTAACAAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATCACAAACTGTACCAGGAAAGGTGAACCCTGTAACAAAGAAG  350

seq1  CTCCTGAAGCTGACAAGCACTAGGACACGCCCTGATCCTCACCACTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGCTGACAAGCACTAGGACACGCCCTGATCCTCACCACTCAGT  400

seq1  GGTGGCAAGGCTAGGCTGAAGCCCAGGGGCCTTGCTTCTGCACTCAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAGGCTAGGCTGAAGCCCAGGGGCCTTGCTTCTGCACTCAACAC  450

seq1  AGGCGACCCCAAGACCAGGTCCTAGAGCAAGCTAGGTGTAGAAGCGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACCCCAAGACCAGGTCCTAGAGCAAGCTAGGTGTAGAAGCGTTCC  500

seq1  TCCTGCTTATCTAGGAAATTATTCCTAACCCTGCAGGTTCTCGCAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTATCTAGGAAATTATTCCTAACCCTGCAGGTTCTCGCAGAGGC  550

seq1  TCTTGGCTCTGGTTCTGGCCATTGTGCCTCCCGAGACGGCTGGATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTCTGGTTCTGGCCATTGTGCCTCCCGAGACGGCTGGATTCTTA  600

seq1  TTTCTACACTCACCCACTTTCTAAAATCAAACCTGAGAGGAAGGGCACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACACTCACCCACTTTCTAAAATCAAACCTGAGAGGAAGGGCACGG  650

seq1  CCCTGGATGAGAATGCCCTGAAATACTAAGAGCATTCTTCCGCAGGGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGAGAATGCCCTGAAATACTAAGAGCATTCTTCCGCAGGGACG  700

seq1  TTTACAATAGGGCTGTCCCT-GGGGACGGGCAAAGTTAGTCTGTTGGCAG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTACAATAGGGCTGTCCCTGGGGGACGGGCAAAGTTAGTCTGTTGGCAG  750

seq1  AGTGGGAAGGGTGTGTGTGTGCGTGTGTGTTGCC-TTGTGTTTT-GGAGA  797
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  AGTGGGAAGGGTGTGTGTGTGCGTGTGTGTTGCCTTTGTGTTTTGGGAGA  800

seq1  GAGAAGGAGAGA  809
      ||||||||||||
seq2  GAGAAGGAGAGA  812