BAC Information

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BAC

Clone NameB6Ng01-012B07
Chromosome3 (Build37)
Map Location 116,708,785 - 116,853,375
singlet/doubletdoublet
Overlap gene1700061I17Rik
Upstream geneSlc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B07.bB6Ng01-012B07.g
ACCDH847269DH847270
length9511,085
definitionDH847269|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B07, 5' end.DH847270|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,708,785 - 116,709,471)(116,852,275 - 116,853,375)
sequence
gaattccagagtatttcaaactgtttaaacttcacttttaacttctctgc
caaactatgaccttccttctgggggtcatttgctttctgaagtggcctgg
atcttactattgattatcacagagagaaactacctaccctgatagagtct
cttcccccacatatctcacctttaaaacttgctatactttgtatctcttg
ttaggtaataaataacccaacccccaaaatccccttagtgatttaatgta
ctaatcatctcttatagaaagaaattctgttccatagttctctgggtcaa
gaatttaggatcatttttacaacattccagtcacaagccagttggggttg
ctgttatctgaagtcttgacgaaggctggttaaatcccatttttaaggta
accccctacagtggatgttggccaattatttttgcaatggttgttatcct
tgggcttgagttttttctatagtatatgactgcattaccccaaagagtaa
ttaagatgagagatcaagacagaagctgaaatgtctgctcacactctgtt
cctctgctcacagactgtcacttctgctatattgaactgctcatacaggg
tagtcctgattcatccaaataggaacttgctccaggcaggagtgcctgga
ggcaagggtcattgtagattgtgtttagaactgattaccaagggctaagc
tctgatctccaatgattaccgtgtgccctacttaaaaaagtctcaacctc
cttcctaaagaccctcaagtctcacgctattgcagcatcatcccaaagtc
tatgatagtatcacatcagtcagatcggtgtggcttcctgaatattgctc
ttctagatccaaaaacttggtatctgtttcctacatacccagaacctccg
gattatggaataggcagaggagaaaatgagagccactgtctcactgctct
g
gaattcttagatttcacacaggaataactaatcatactgacttgcattgc
ttcttaagatattattttctataaagatgactgtaacactcatctgttat
cacttatgatattaaacaattcaatttgtgatgatttgtcacatcttcac
atttggtccatggtagccatttcttttcttttttgttttttttctttttt
gtttttttacatgcatgaatcaagtaataaagttttattgtcacaggttt
taatttttcagtttacgacaaataacatggcactttttatttgtaataat
aaatgagcctctaaaaatgtctccctttaataacagaattctttgaattg
gaaagtgaagactaaaaaaacaagagtacagaaatacccaaatatgctaa
aacttgggggtggggctaaagtttcctttttgtttagaatgactgtacag
aattaaggaagctggtgggacgtcgttccagtactagaggcccaaatggt
aaaaacctggtctagcagcgcaggagtaggggtggtggcaagagtagtga
gatgttggcatggatcagtagtgctgatgtaaggtgatggtgagcttgtc
ctagtgatgacagtaaggacaggtaccagtggaagaaaggaagggagaaa
gggtctctgcatttgcttagagcagcactggtctacctccatggcagcca
tttcttttcgctgttgggtgttcacagagaatcaaatttctaaattactt
caaatcaggtaaggtaacctaactcctttaaaggagttaactccttttaa
ctaattctgcttcttttttgggtgaatttaaatttaaatctacatttaat
ttcatttaagcattttatttaaatgaatttcaacttcatttaaaattcgg
attgttttaatgaattcaatttgaagtttatctgttaaagttaaattaat
ctctgtttaatgtaagaaatataaaaagagagctagcatgctatttgggg
aaatggctaaaagaggaggaaaacatctcagtttctctaaatagaattga
actcaaggtaactgaaatattccaaggtgggacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116708785_116709471
seq2: B6Ng01-012B07.b_43_729

seq1  GAATTCCAGAGTATTTCAAACTGTTTAAACTTCACTTTTAACTTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTATTTCAAACTGTTTAAACTTCACTTTTAACTTCTCTGC  50

seq1  CAAACTATGACCTTCCTTCTGGGGGTCATTTGCTTTCTGAAGTGGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATGACCTTCCTTCTGGGGGTCATTTGCTTTCTGAAGTGGCCTGG  100

seq1  ATCTTACTATTGATTATCACAGAGAGAAACTACCTACCCTGATAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTATTGATTATCACAGAGAGAAACTACCTACCCTGATAGAGTCT  150

seq1  CTTCCCCCACATATCTCACCTTTAAAACTTGCTATACTTTGTATCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCACATATCTCACCTTTAAAACTTGCTATACTTTGTATCTCTTG  200

seq1  TTAGGTAATAAATAACCCAACCCCCAAAATCCCCTTAGTGATTTAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAATAAATAACCCAACCCCCAAAATCCCCTTAGTGATTTAATGTA  250

seq1  CTAATCATCTCTTATAGAAAGAAATTCTGTTCCATAGTTCTCTGGGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATCTCTTATAGAAAGAAATTCTGTTCCATAGTTCTCTGGGTCAA  300

seq1  GAATTTAGGATCATTTTTACAACATTCCAGTCACAAGCCAGTTGGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGGATCATTTTTACAACATTCCAGTCACAAGCCAGTTGGGGTTG  350

seq1  CTGTTATCTGAAGTCTTGACGAAGGCTGGTTAAATCCCATTTTTAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCTGAAGTCTTGACGAAGGCTGGTTAAATCCCATTTTTAAGGTA  400

seq1  ACCCCCTACAGTGGATGTTGGCCAATTATTTTTGCAATGGTTGTTATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTACAGTGGATGTTGGCCAATTATTTTTGCAATGGTTGTTATCCT  450

seq1  TGGGCTTGAGTTTTTTCTATAGTATATGACTGCATTACCCCAAAGAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGAGTTTTTTCTATAGTATATGACTGCATTACCCCAAAGAGTAA  500

seq1  TTAAGATGAGAGATCAAGACAGAAGCTGAAATGTCTGCTCACACTCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGAGAGATCAAGACAGAAGCTGAAATGTCTGCTCACACTCTGTT  550

seq1  CCTCTGCTCACAGACTGTCACTTCTGCTATATTGAACTGCTCATACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCACAGACTGTCACTTCTGCTATATTGAACTGCTCATACAGGG  600

seq1  TAGTCCTGATTCATCCAAATAGGAACTTGCTCCAGGCAGGAGTGCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGATTCATCCAAATAGGAACTTGCTCCAGGCAGGAGTGCCTGGA  650

seq1  GGCAAGGGTCATTGTAGATTGTGTTTAGAACTGATTA  687
      |||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGTCATTGTAGATTGTGTTTAGAACTGATTA  687

seq1: chr3_116852275_116853375
seq2: B6Ng01-012B07.g_68_1152 (reverse)

seq1  TTGTCCACCTTTGAAATATTTTCGGTTACCTTTGTATGTCATATTCTATT  50
      ||||||  | ||| |||| |||| ||||||||   |  ||| ||||||||
seq2  TTGTCCCACCTTGGAATA-TTTCAGTTACCTT--GAGTTCA-ATTCTATT  46

seq1  TAGGGAAACTTCAAATGTTTTCCTTCCTCTTTT-GCCATTTCCCCAAATG  99
      ||| ||||| | | ||||||||| ||||||||| ||||||||||||||| 
seq2  TAGAGAAAC-TGAGATGTTTTCC-TCCTCTTTTAGCCATTTCCCCAAATA  94

seq1  GCATGCTAGCTCTCTTTTTTATATTTCTAACATTTAAAATTGAAGATTAA  149
      |||||||||||||| ||||||||||||| ||||| || |    ||||| |
seq2  GCATGCTAGCTCTC-TTTTTATATTTCTTACATTAAACA---GAGATT-A  139

seq1  ATTAAACTTTAAACAAGATTAAACTTCAAATTGAAATTCATTAAAACAAA  199
      ||| ||||||||   ||| |||||||||||||| ||||||||||||| ||
seq2  ATTTAACTTTAA--CAGA-TAAACTTCAAATTG-AATTCATTAAAAC-AA  184

seq1  TCCGAATTTTAAATGAAGTTGAAATTCAATTAAATAAAATGCTTAAATGA  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCGAATTTTAAATGAAGTTGAAATTCATTTAAATAAAATGCTTAAATGA  234

seq1  AATTAAATGTAGATTTAAAATTTAAATTCATCCAAAAAAGAAGCAGAATT  299
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AATTAAATGTAGATTT-AAATTTAAATTCACCCAAAAAAGAAGCAGAATT  283

seq1  AGTTAAAAGGAGTTAACTCCTTTAAAGGAGTTAGGTTACCTTACCTGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGGAGTTAACTCCTTTAAAGGAGTTAGGTTACCTTACCTGATT  333

seq1  TGAAGTAATTTAGAAATTTGATTCTCTGTGAACACCCAACAGCGAAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATTTAGAAATTTGATTCTCTGTGAACACCCAACAGCGAAAAGA  383

seq1  AATGGCTGCCATGGAGGTAGACCAGTGCTGCTCTAAGCAAATGCAGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGCCATGGAGGTAGACCAGTGCTGCTCTAAGCAAATGCAGAGAC  433

seq1  CCTTTCTCCCTTCCTTTCTTCCACTGGTACCTGTCCTTACTGTCATCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCCTTCCTTTCTTCCACTGGTACCTGTCCTTACTGTCATCACT  483

seq1  AGGACAAGCTCACCATCACCTTACATCAGCACTACTGATCCATGCCAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGCTCACCATCACCTTACATCAGCACTACTGATCCATGCCAACA  533

seq1  TCTCACTACTCTTGCCACCACCCCTACTCCTGCGCTGCTAGACCAGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTACTCTTGCCACCACCCCTACTCCTGCGCTGCTAGACCAGGTTT  583

seq1  TTACCATTTGGGCCTCTAGTACTGGAACGACGTCCCACCAGCTTCCTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTTGGGCCTCTAGTACTGGAACGACGTCCCACCAGCTTCCTTAA  633

seq1  TTCTGTACAGTCATTCTAAACAAAAAGGAAACTTTAGCCCCACCCCCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACAGTCATTCTAAACAAAAAGGAAACTTTAGCCCCACCCCCAAG  683

seq1  TTTTAGCATATTTGGGTATTTCTGTACTCTTGTTTTTTTAGTCTTCACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATATTTGGGTATTTCTGTACTCTTGTTTTTTTAGTCTTCACTT  733

seq1  TCCAATTCAAAGAATTCTGTTATTAAAGGGAGACATTTTTAGAGGCTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCAAAGAATTCTGTTATTAAAGGGAGACATTTTTAGAGGCTCAT  783

seq1  TTATTATTACAAATAAAAAGTGCCATGTTATTTGTCGTAAACTGAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACAAATAAAAAGTGCCATGTTATTTGTCGTAAACTGAAAAAT  833

seq1  TAAAACCTGTGACAATAAAACTTTATTACTTGATTCATGCATGTAAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTGTGACAATAAAACTTTATTACTTGATTCATGCATGTAAAAAA  883

seq1  ACAAAAAAGAAAAAAAACAAAAAAGAAAAGAAATGGCTACCATGGACCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAGAAAAAAAACAAAAAAGAAAAGAAATGGCTACCATGGACCAA  933

seq1  ATGTGAAGATGTGACAAATCATCACAAATTGAATTGTTTAATATCATAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGATGTGACAAATCATCACAAATTGAATTGTTTAATATCATAAG  983

seq1  TGATAACAGATGAGTGTTACAGTCATCTTTATAGAAAATAATATCTTAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAGATGAGTGTTACAGTCATCTTTATAGAAAATAATATCTTAAG  1033

seq1  AAGCAATGCAAGTCAGTATGATTAGTTATTCCTGTGTGAAATCTAAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGCAAGTCAGTATGATTAGTTATTCCTGTGTGAAATCTAAGAAT  1083

seq1  TC  1101
      ||
seq2  TC  1085