BAC Information

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BAC

Clone NameB6Ng01-012H05
Chromosome3 (Build37)
Map Location 50,069,290 - 50,235,439
singlet/doubletdoublet
Overlap geneLOC639469, Slc7a11
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H05.bB6Ng01-012H05.g
ACCDH847541DH847542
length1,2191,002
definitionDH847541|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H05, 5' end.DH847542|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,234,188 - 50,235,439)(50,069,290 - 50,070,256)
sequence
gaattcaagtgccctgagattctaagtcagacatgaacacttccagggag
ctaagaaaaagagacgtcacaagtcctcgagaaaccagttgtatccgtga
gctcacacataccttttgagctacttccttattgtttcacccctgagctg
atggtaaatgcttgagctcgggacttagcctactggcgtctaatcttaac
actacctgcatgtgaacacggacaggttaaacagaacctggagttttacc
tgctcatataaaatacatgcctggtaatagcaaccatgtcatagaaatgt
gagggttagcaaacattatccatgaatgtctttgaacattgtctgatgga
agataatcgtttacatttatgtagtgctggctgtgtctattcctacagcg
agatcaatgatatagatagagttggccctctgccttctaaaggttctttc
tgaatcagtgcatccaggaaatggatgctgaaagataaagcaacccagca
gcagtggctgcagagagaagtggaggcaccagctttatctcatcatgtac
cattcaaatataccatctgtatgttttatcagtttagcacggagcgctcc
aaagacggaagtcggaaagaatatgaatcggagagactacccaatatctg
taacatctctcctcaaagtgaaagacacgggaaatgatttcatgtgcaga
aggaaatacttgatagtccttgaaccacagcaccagtccctgaagatccc
cctaaacatctttttaaaatacaactcctttcaaaaatgaatttcttatt
tctagaatttatggatatagctttccctgctacattttcatttctacaaa
actgcatcttaagttagtaaataaagcccacatattcctgaattttcatt
ttggtaaaagtttaaagtaagccaaaaatttttttctcgtgtatgaaatt
aatagttactcatgccagagtgctggtacagatatctattattagtatag
tagatggtgtggtgtatttaagaatctagtcctgttgaataattgtggaa
tagccaattagcaccctttaattccactactaagagcacaagatggagcc
cagtttagcaaagaatctttccttgctaccaaggcagctcttattttgct
aagctatagtaactagtcagtgagtgaactctctgaattgatctctatga
gagagattagttgaataaa
gaattcttgggtatgcatttgcctaggaattcaagatctcctggtccgtt
ggaacacccaaaaatattagttacagcctataaagtgttataaatcaaga
ttctttccttaaaaaaaaaaactcttattttcaaaatcattgtaaaacta
tgcctacatgttaactttctcctccctgtgtgatttctttttgtgggttc
cccgaagcacagcagagcggggttatggcactgtagtcatcaccatccac
gttgaggaagttcctacattttctttgcttgggaagctgaatacgctgag
aatcccatggatcgtcaggctgaggttgagtacgagaagacatgtcagga
gcagaaactacgggtgtctgatcaacattcttttgtgccttttggacatg
ggccatttgataggtagtgatagtacttgcatctgactctgatatgacat
aactgtaatcttctattaaaacagtccagtttacatgaccctatggcagg
ccatagtcaggtgttaggtttctactaagatctaatagcaagctaaaagc
cattctctatagagatctaaaatcattttcaaaggaagacctgaaggcag
gcatggtgaaatgtgcatttaatctcacaacttatgagagagaggcagaa
gtacctctgatatgtaggtcagcctggtatacacagaaagttctagggca
accagtgccatgcagtgagatgtctcaaaaacaaacaataaaaccttaaa
aggcagtcagatttggtggcagcatctaacattctgtgctgtatgtcatt
tttagattctgttaagtttcaaaataatttcctggtctgtcattaacatt
tctaacaccactggatttgttccatcctgtgataacagtgacaaatgaaa
tcatggctggaccttttgtggagtgtttcattgtctcagacatcaataaa
gctctagccataagtaacgggttcagagaagcatatatgagatgtacagt
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50234188_50235439
seq2: B6Ng01-012H05.b_45_1263 (reverse)

seq1  TTTATTCTGAGCATCTAATCTCTCTCTCTCATTAGTAGATATACCATATT  50
      ||||||     || ||||||||||||         |||| ||  || |||
seq2  TTTATT-----CAACTAATCTCTCTC--------ATAGAGAT--CA-ATT  34

seq1  CCAGGAGGTTCACCTCACTGACCCAGAGGTACCTATAGCTTAGCAAATAA  100
       |||   ||||| |||||||||    || || |||||||||||||||  |
seq2  -CAGAGAGTTCA-CTCACTGAC---TAGTTA-CTATAGCTTAGCAAAATA  78

seq1  GGAGGCTGCCTGTGGGTTAGCCAGGAGAGATTCTCTGGCTAAAACTGGGG  150
       || ||||||| |||  |||| |||| ||||||| | ||| ||||| |||
seq2  AGA-GCTGCCT-TGG--TAGCAAGGAAAGATTCT-TTGCT-AAACT-GGG  121

seq1  CTCCATCCTGTG-TCTTAGTAGTGGAATTTAAGGGTGCCTAATTGGCTTA  199
      ||||||| |||| |||||||||||||||| ||||||| ||||||||||  
seq2  CTCCATCTTGTGCTCTTAGTAGTGGAATTAAAGGGTG-CTAATTGGCTAT  170

seq1  TCCAACAATATTCAACAGGGACTAGATTCTTAAATACA-CACACCATCTA  248
      ||||  | ||||||||| |||||||||||||||||||| |||||||||||
seq2  TCCACAATTATTCAACA-GGACTAGATTCTTAAATACACCACACCATCTA  219

seq1  CCTATACCTTAATAATAAGATATCTGTACCAGCACTCTGGCATGAGTAAC  298
       ||||||  ||||||| |||||||||||||||||||||||||||||||||
seq2  -CTATAC--TAATAAT-AGATATCTGTACCAGCACTCTGGCATGAGTAAC  265

seq1  TATTAATTTCATACACGAGAAAAAAATTTTTGGCTTACTTTAAACTTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCATACACGAGAAAAAAATTTTTGGCTTACTTTAAACTTTTA  315

seq1  CCAAAATGAAAATTCAGGAATATGTGGGCTTTATTTACTAACTTAAGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGAAAATTCAGGAATATGTGGGCTTTATTTACTAACTTAAGATG  365

seq1  CAGTTTTGTAGAAATGAAAATGTAGCAGGGAAAGCTATATCCATAAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTAGAAATGAAAATGTAGCAGGGAAAGCTATATCCATAAATTC  415

seq1  TAGAAATAAGAAATTCATTTTTGAAAGGAGTTGTATTTTAAAAAGATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAGAAATTCATTTTTGAAAGGAGTTGTATTTTAAAAAGATGTT  465

seq1  TAGGGGGATCTTCAGGGACTGGTGCTGTGGTTCAAGGACTATCAAGTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGATCTTCAGGGACTGGTGCTGTGGTTCAAGGACTATCAAGTATT  515

seq1  TCCTTCTGCACATGAAATCATTTCCCGTGTCTTTCACTTTGAGGAGAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCACATGAAATCATTTCCCGTGTCTTTCACTTTGAGGAGAGAT  565

seq1  GTTACAGATATTGGGTAGTCTCTCCGATTCATATTCTTTCCGACTTCCGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATATTGGGTAGTCTCTCCGATTCATATTCTTTCCGACTTCCGT  615

seq1  CTTTGGAGCGCTCCGTGCTAAACTGATAAAACATACAGATGGTATATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGCGCTCCGTGCTAAACTGATAAAACATACAGATGGTATATTTG  665

seq1  AATGGTACATGATGAGATAAAGCTGGTGCCTCCACTTCTCTCTGCAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACATGATGAGATAAAGCTGGTGCCTCCACTTCTCTCTGCAGCCA  715

seq1  CTGCTGCTGGGTTGCTTTATCTTTCAGCATCCATTTCCTGGATGCACTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGGGTTGCTTTATCTTTCAGCATCCATTTCCTGGATGCACTGA  765

seq1  TTCAGAAAGAACCTTTAGAAGGCAGAGGGCCAACTCTATCTATATCATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGAACCTTTAGAAGGCAGAGGGCCAACTCTATCTATATCATTG  815

seq1  ATCTCGCTGTAGGAATAGACACAGCCAGCACTACATAAATGTAAACGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGCTGTAGGAATAGACACAGCCAGCACTACATAAATGTAAACGATT  865

seq1  ATCTTCCATCAGACAATGTTCAAAGACATTCATGGATAATGTTTGCTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCATCAGACAATGTTCAAAGACATTCATGGATAATGTTTGCTAAC  915

seq1  CCTCACATTTCTATGACATGGTTGCTATTACCAGGCATGTATTTTATATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATTTCTATGACATGGTTGCTATTACCAGGCATGTATTTTATATG  965

seq1  AGCAGGTAAAACTCCAGGTTCTGTTTAACCTGTCCGTGTTCACATGCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAAAACTCCAGGTTCTGTTTAACCTGTCCGTGTTCACATGCAGG  1015

seq1  TAGTGTTAAGATTAGACGCCAGTAGGCTAAGTCCCGAGCTCAAGCATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTAAGATTAGACGCCAGTAGGCTAAGTCCCGAGCTCAAGCATTTA  1065

seq1  CCATCAGCTCAGGGGTGAAACAATAAGGAAGTAGCTCAAAAGGTATGTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCTCAGGGGTGAAACAATAAGGAAGTAGCTCAAAAGGTATGTGT  1115

seq1  GAGCTCACGGATACAACTGGTTTCTCGAGGACTTGTGACGTCTCTTTTTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACGGATACAACTGGTTTCTCGAGGACTTGTGACGTCTCTTTTTC  1165

seq1  TTAGCTCCCTGGAAGTGTTCATGTCTGACTTAGAATCTCAGGGCACTTGA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCCTGGAAGTGTTCATGTCTGACTTAGAATCTCAGGGCACTTGA  1215

seq1  ATTC  1252
      ||||
seq2  ATTC  1219

seq1: chr3_50069290_50070256
seq2: B6Ng01-012H05.g_67_1031

seq1  GAATTCTTGGGTATGCATTTGCCTAGGAATTCAAGATCTCCTGGTCCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTATGCATTTGCCTAGGAATTCAAGATCTCCTGGTCCGTT  50

seq1  GGAACACCCAAAAATATTAGTTACAGCCTATAAAGTGTTATAAATCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCCAAAAATATTAGTTACAGCCTATAAAGTGTTATAAATCAAGA  100

seq1  TTCTTTCCTTAAAAAAAAAAACTCTTATTTTCAAAATCATTGTAAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTAAAAAAAAAAACTCTTATTTTCAAAATCATTGTAAAACTA  150

seq1  TGCCTACATGTTAACTTTCTCCTCCCTGTGTGATTTCTTTTTGTGGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATGTTAACTTTCTCCTCCCTGTGTGATTTCTTTTTGTGGGTTC  200

seq1  CCCGAAGCACAGCAGAGCGGGGTTATGGCACTGTAGTCATCACCATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAGCACAGCAGAGCGGGGTTATGGCACTGTAGTCATCACCATCCAC  250

seq1  GTTGAGGAAGTTCCTACATTTTCTTTGCTTGGGAAGCTGAATACGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAAGTTCCTACATTTTCTTTGCTTGGGAAGCTGAATACGCTGAG  300

seq1  AATCCCATGGATCGTCAGGCTGAGGTTGAGTACGAGAAGACATGTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATGGATCGTCAGGCTGAGGTTGAGTACGAGAAGACATGTCAGGA  350

seq1  GCAGAAACTACGGGTGTCTGATCAACATTCTTTTGTGCCTTTTGGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTACGGGTGTCTGATCAACATTCTTTTGTGCCTTTTGGACATG  400

seq1  GGCCATTTGATAGGTAGTGATAGTACTTGCATCTGACTCTGATATGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTGATAGGTAGTGATAGTACTTGCATCTGACTCTGATATGACAT  450

seq1  AACTGTAATCTTCTATTAAAACAGTCCAGTTTACATGACCCTATGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATCTTCTATTAAAACAGTCCAGTTTACATGACCCTATGGCAGG  500

seq1  CCATAGTCAGGTGTTAGGTTTCTACTAAGATCTAATAGCAAGCTAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTCAGGTGTTAGGTTTCTACTAAGATCTAATAGCAAGCTAAAAGC  550

seq1  CATTCTCTATAGAGATCTAAAATCATTTTCAAAGGAAGACCTGAAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTATAGAGATCTAAAATCATTTTCAAAGGAAGACCTGAAGGCAG  600

seq1  GCATGGTGAAATGTGCATTTAATCTCACAACTTATGAGAGAGAGGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGAAATGTGCATTTAATCTCACAACTTATGAGAGAGAGGCAGAA  650

seq1  GTACCTCTGATATGTAGGTCAGCCTGGTATACACAGAAAGTTCTAGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTGATATGTAGGTCAGCCTGGTATACACAGAAAGTTCTAGGGCA  700

seq1  ACCAGTGCCATGCAGTGAGATGTCTCAAAAACAAACAATAAAACCTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCCATGCAGTGAGATGTCTCAAAAACAAACAATAAAACCTTAAA  750

seq1  AGGCAGTCAGATTTGGTGGCAGCATCTAACATTCTGTGCTGTATGTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCAGATTTGGTGGCAGCATCTAACATTCTGTGCTGTATGTCATT  800

seq1  TTTAGATTCTGTTAAGGTTTCAAATAATTTCCTGGTCTGTCATTAACATT  850
      |||||||||||||||| ||  |||||||||||||||||||||||||||||
seq2  TTTAGATTCTGTTAAGTTTCAAAATAATTTCCTGGTCTGTCATTAACATT  850

seq1  TCTAACACCACTGGATTTGTTCCATCCTGTGATAACAGTGACAAATGACA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTAACACCACTGGATTTGTTCCATCCTGTGATAACAGTGACAAATGAAA  900

seq1  TCATGGCTGGACCTTTTGTGGAGTGTTTCATTGTTCTCAGACATCAATTA  950
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TCATGGCTGGACCTTTTGTGGAGTGTTTCATTG-TCTCAGACATCAATAA  949

seq1  AGCTCTTAGCCATAAGT  967
      ||||| |||||||||||
seq2  AGCTC-TAGCCATAAGT  965