BAC Information

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BAC

Clone NameB6Ng01-012P15
Chromosome3 (Build37)
Map Location 145,565,713 - 145,679,615
singlet/doubletdoublet
Overlap geneBcl10, 2410004B18Rik, Syde2
Upstream geneAI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331
Downstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012P15.bB6Ng01-012P15.g
ACCDH847915DH847916
length1,1141,098
definitionDH847915|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P15, 5' end.DH847916|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,565,713 - 145,566,840)(145,678,489 - 145,679,615)
sequence
gaattctttgacttgatcataaaaaaaaaaaaacagtttgaaaacaggca
aaaggttgaagagatacttctccagagaatatctacaaataaataaccat
tagtcattagtcatgtgggcagatgtttgatgctactggttatcaagaat
gtcccaactaaactcacagtgagagccagagatggctcagcacttaagag
cacttgttcttgcagaggacccaagttcaattcccaccacctctatggtg
actgaacaccatctttagctccagctccagggaatccagtgccctcctct
aacctccccgggcaccgggtacacacgtggtgcacagacttatgcgtcag
caaaacattcatgcacataaaatcaataaatctaaaaagaaaattaaatc
atagtgaggtactcctttgcactcactagatattggttagactcaaaagt
cagacttgaggagacggctgagtgggtaatatgaggacctcaattagaat
ctcaaacactcacagaacaaagctatgcatagccacactcatacctgaaa
ccataatgctttgaaagcagaacagagtaagagcaaattagcttgctgac
tagcctagctctaggctctgagagagactgtatctccaagaaataaagga
gagagagcaaaagagctaatgtcccccgatagccccctctggtctccacg
catacaccgggcaagcgtacctaaacatgcatgtgcccatataacacaca
cacacacacacacacacacacacacacacggcagaacacagaagcataca
cacacatacacacaaagtaaaaccgaatcttagttaacactccgtccctc
gcatacctcaaagggtatgagggcatgaaataagaggaattatacctaag
tgtttggtacccagcgtgccgctgctcaacgcacctcttatttattgaat
gggattaatcagcttctcaccagcacctgccactacacagcgcagaaacc
gcattcctgaaactaccctaccctccatagaattctttctctttgtgtta
aatgcatgacagagtccaaccctgaaatagactttgtgatgatgctgtgg
aatgcctctagcat
gaattctgggaattgaacctctgggagggcagctagtgctctaactgccg
agtcaccttttcagcaccacacaaattcttaagaccaaaaggtaattgcc
agcatgagctgaagtaatttaagagtaaccgttagcatagtaattctgta
aggaagaatggacgtgggctggagatgacttggttacgagcactcgctgc
tcttccggaggagccacacctctgctctggtagctcacaactgcctcttt
aactcatgctgcagggaacccaatgggatcttctggccttctcaggctcc
tctacgcacacacacatcacataagtaaaaataaaataaatattaaaaat
acaaaaaagaataataggcttaaaaagaaaaagaattttggttcaaaaca
aattaaattaaggtgagcaacagaatattatgtgctaaaagctgtgctga
gcaccctagggacatcttggtacttaattttcacacaaagtctataaact
catgagattaagatggaacacagttacgtctacggttataaagagtttcc
caaagtcagagtgccctaagtggcacaaccagcaatctgagccagctttt
actaagcccaaaatatatacgatggctcaaatgtctacaatgttatgagc
aaacacaaaatataaatagcaaacaatacagagcaggtctcaattcctta
gtacagaaaaagcaaaaaaaaaaaatctagatttgttttcccaaccatat
ctggacattttaatcattagctaatccagacatcccattgctgttaaaga
aatgtactccagagaatcctctacctggccagagctggagcaagtaatga
agaacctcgatgtgttttttaaaatccaaagcactggcaagctcttcaga
atcggtgaagactctgtgttgtggttgaagcctcttgctctggtagcaac
actggtccaagcacacagccaaatctggcagtcatcttatcactcgtgta
gagcatcagttcagatgatcacacatcttcaggttgcctagtatgtcaac
acatttaccagtagtgcttagatgtcctatataaatctagtaattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145565713_145566840
seq2: B6Ng01-012P15.b_44_1157

seq1  GAATTCTTTGACTTGATCATAAAAAAAAAAAAACAGTTTGAAAACAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTTGATCATAAAAAAAAAAAAACAGTTTGAAAACAGGCA  50

seq1  AAAGGTTGAAGAGATACTTCTCCAGAGAATATCTACAAATAAATAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGAAGAGATACTTCTCCAGAGAATATCTACAAATAAATAACCAT  100

seq1  TAGTCATTAGTCATGTGGGCAGATGTTTGATGCTACTGGTTATCAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTAGTCATGTGGGCAGATGTTTGATGCTACTGGTTATCAAGAAT  150

seq1  GTCCCAACTAAACTCACAGTGAGAGCCAGAGATGGCTCAGCACTTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACTAAACTCACAGTGAGAGCCAGAGATGGCTCAGCACTTAAGAG  200

seq1  CACTTGTTCTTGCAGAGGACCCAAGTTCAATTCCCACCACCTCTATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTTCTTGCAGAGGACCCAAGTTCAATTCCCACCACCTCTATGGTG  250

seq1  ACTGAACACCATCTTTAGCTCCAGCTCCAGGGAATCCAGTGCCCTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACACCATCTTTAGCTCCAGCTCCAGGGAATCCAGTGCCCTCCTCT  300

seq1  AACCTCCCCGGGCACCGGGTACACACGTGGTGCACAGACTTATGCGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCCGGGCACCGGGTACACACGTGGTGCACAGACTTATGCGTCAG  350

seq1  CAAAACATTCATGCACATAAAATCAATAAATCTAAAAAGAAAATTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTCATGCACATAAAATCAATAAATCTAAAAAGAAAATTAAATC  400

seq1  ATAGTGAGGTACTCCTTTGCACTCACTAGATATTGGTTAGACTCAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGGTACTCCTTTGCACTCACTAGATATTGGTTAGACTCAAAAGT  450

seq1  CAGACTTGAGGAGACGGCTGAGTGGGTAATATGAGGACCTCAATTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGAGGAGACGGCTGAGTGGGTAATATGAGGACCTCAATTAGAAT  500

seq1  CTCAAACACTCACAGAACAAAGCTATGCATAGCCACACTCATACCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACTCACAGAACAAAGCTATGCATAGCCACACTCATACCTGAAA  550

seq1  CCATAATGCTTTGAAAGCAGAACAGAGTAAGAGCAAATTAGCTTGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGCTTTGAAAGCAGAACAGAGTAAGAGCAAATTAGCTTGCTGAC  600

seq1  TAGCCTAGCTCTAGGCTCTGAGAGAGACTGTATCTCCAAGAAATAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGCTCTAGGCTCTGAGAGAGACTGTATCTCCAAGAAATAAAGGA  650

seq1  GAGAGAGCAAAAGAGCTAATGTCCCCCGATAGCCCCCTCTGGTCTCCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCAAAAGAGCTAATGTCCCCCGATAGCCCCCTCTGGTCTCCACG  700

seq1  CATACACCGGGCAAGCGTACCTAAACATGCATGTGCCCATATAACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCGGGCAAGCGTACCTAAACATGCATGTGCCCATATAACACACA  750

seq1  CACACACACACACACACACACACACACACGGCAGAACACAGAAGCATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGGCAGAACACAGAAGCATACA  800

seq1  CACACATACACACAAAGTAAAACCGAATCTTAGTTAACACTCCGTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACAAAGTAAAACCGAATCTTAGTTAACACTCCGTCCCTC  850

seq1  GCATACCTCAAAGGGTATGAGGGCATGAAATAAGAGGAATTATACCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTCAAAGGGTATGAGGGCATGAAATAAGAGGAATTATACCTAAG  900

seq1  TGTTTGGTACCCAGCGTGCCGCTGCTCAACGCAACCTCTTATTTATTGAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTGGTACCCAGCGTGCCGCTGCTCAACGC-ACCTCTTATTTATTGAA  949

seq1  TGGGATTAATCAGCTTCTCACCAGCACCTGCCACTACACAGCGCAGAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAATCAGCTTCTCACCAGCACCTGCCACTACACAGCGCAGAAAC  999

seq1  CGCCATTCCTGAAACTACCCTACCCTCCAATTAGAATTCTTTCTCTTTTG  1050
      || ||||||||||||||||||||||||||  |||||||||||||| ||||
seq2  CG-CATTCCTGAAACTACCCTACCCTCCA--TAGAATTCTTTCTC-TTTG  1045

seq1  TGGTTAAAATGCATTGACAGAGTCCAACCCTGAAAATAGGACTTTGTGAA  1100
      ||  | ||||||| |||||||||||||||||| ||||| ||||||||| |
seq2  TG--TTAAATGCA-TGACAGAGTCCAACCCTG-AAATA-GACTTTGTG-A  1089

seq1  TGATTGCTTGTGGAATGCCTCTTAGCAT  1128
      ||| ||| ||||||||||||| ||||||
seq2  TGA-TGC-TGTGGAATGCCTC-TAGCAT  1114

seq1: chr3_145678489_145679615
seq2: B6Ng01-012P15.g_67_1164 (reverse)

seq1  AGTATATTACTAAGTATTTTATATA-GACATCTAAGCACTTACTGGGTTA  49
      |||| |||||||     |||||||| ||||||||||||| ||||||  ||
seq2  AGTA-ATTACTA---GATTTATATAGGACATCTAAGCAC-TACTGG--TA  43

seq1  AATTGTGTTTGGACATACTTAGGCAACCCTGAAGATGTTGTTGGATCATC  99
      || ||||||  ||||||| ||||||| |||||||||| |||  |||||||
seq2  AA-TGTGTT--GACATAC-TAGGCAA-CCTGAAGATG-TGT--GATCATC  85

seq1  TGAAACTGGTGGCCTCCTACCACGAAGTGAATAAGATGACCTGCCAGAAT  149
      || ||||| ||  || ||| |||| |||| ||||||||| ||||||| ||
seq2  TG-AACTGATG--CT-CTA-CACG-AGTG-ATAAGATGA-CTGCCAG-AT  126

seq1  TTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTC  199
      |||||||||||| ||||||||||||||||  |||||| ||||||||||||
seq2  TTGGCTGTGTGC-TTGGACCAGTGTTGCT--ACCAGA-GCAAGAGGCTTC  172

seq1  AACCCACAACAACAGAGTCTTCACCGATTCTGAAGAGCTTGCCAGTGCTT  249
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AA-CCACAAC-ACAGAGTCTTCACCGATTCTGAAGAGCTTGCCAGTGCTT  220

seq1  TGGATTTTAAAAAACACATCGAGGTTCTTCATTACTTGCTCCAGCTCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTAAAAAACACATCGAGGTTCTTCATTACTTGCTCCAGCTCTGG  270

seq1  CCAGGTAGAGGATTCTCTGGAGTACATTTCTTTAACAGCAATGGGATGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGAGGATTCTCTGGAGTACATTTCTTTAACAGCAATGGGATGTC  320

seq1  TGGATTAGCTAATGATTAAAATGTCCAGATATGGTTGGGAAAACAAATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGCTAATGATTAAAATGTCCAGATATGGTTGGGAAAACAAATCT  370

seq1  AGATTTTTTTTTTTTGCTTTTTCTGTACTAAGGAATTGAGACCTGCTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTTTTTTGCTTTTTCTGTACTAAGGAATTGAGACCTGCTCTG  420

seq1  TATTGTTTGCTATTTATATTTTGTGTTTGCTCATAACATTGTAGACATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGCTATTTATATTTTGTGTTTGCTCATAACATTGTAGACATTT  470

seq1  GAGCCATCGTATATATTTTGGGCTTAGTAAAAGCTGGCTCAGATTGCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCGTATATATTTTGGGCTTAGTAAAAGCTGGCTCAGATTGCTGG  520

seq1  TTGTGCCACTTAGGGCACTCTGACTTTGGGAAACTCTTTATAACCGTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCACTTAGGGCACTCTGACTTTGGGAAACTCTTTATAACCGTAGA  570

seq1  CGTAACTGTGTTCCATCTTAATCTCATGAGTTTATAGACTTTGTGTGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTGTGTTCCATCTTAATCTCATGAGTTTATAGACTTTGTGTGAAA  620

seq1  ATTAAGTACCAAGATGTCCCTAGGGTGCTCAGCACAGCTTTTAGCACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTACCAAGATGTCCCTAGGGTGCTCAGCACAGCTTTTAGCACATA  670

seq1  ATATTCTGTTGCTCACCTTAATTTAATTTGTTTTGAACCAAAATTCTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGTTGCTCACCTTAATTTAATTTGTTTTGAACCAAAATTCTTTT  720

seq1  TCTTTTTAAGCCTATTATTCTTTTTTGTATTTTTAATATTTATTTTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAGCCTATTATTCTTTTTTGTATTTTTAATATTTATTTTATTT  770

seq1  TTACTTATGTGATGTGTGTGTGCGTAGAGGAGCCTGAGAAGGCCAGAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATGTGATGTGTGTGTGCGTAGAGGAGCCTGAGAAGGCCAGAAGA  820

seq1  TCCCATTGGGTTCCCTGCAGCATGAGTTAAAGAGGCAGTTGTGAGCTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGGGTTCCCTGCAGCATGAGTTAAAGAGGCAGTTGTGAGCTACC  870

seq1  AGAGCAGAGGTGTGGCTCCTCCGGAAGAGCAGCGAGTGCTCGTAACCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGGTGTGGCTCCTCCGGAAGAGCAGCGAGTGCTCGTAACCAAG  920

seq1  TCATCTCCAGCCCACGTCCATTCTTCCTTACAGAATTACTATGCTAACGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCAGCCCACGTCCATTCTTCCTTACAGAATTACTATGCTAACGG  970

seq1  TTACTCTTAAATTACTTCAGCTCATGCTGGCAATTACCTTTTGGTCTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTAAATTACTTCAGCTCATGCTGGCAATTACCTTTTGGTCTTAA  1020

seq1  GAATTTGTGTGGTGCTGAAAAGGTGACTCGGCAGTTAGAGCACTAGCTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTGTGGTGCTGAAAAGGTGACTCGGCAGTTAGAGCACTAGCTGC  1070

seq1  CCTCCCAGAGGTTCAATTCCCAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  CCTCCCAGAGGTTCAATTCCCAGAATTC  1098