BAC Information

Click to search

BAC

Clone NameB6Ng01-013F21
Chromosome3 (Build37)
Map Location 112,836,818 - 112,837,916
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717, Utp14B-ps
Downstream geneEG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F21.bB6Ng01-013F21.g
ACCDH848197DH848198
length1,090778
definitionDH848197|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F21, 5' end.DH848198|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaaattatatcagtacttattaagccttttttatagtgcaac
tgctattaggtcctttctgatagtcaaaactgtaatgagaactctgccag
tctctaagtatcaccagttaactgcttctgagatagtaatcaggccttct
acttctcagagcacatttcaaaaggttgtaataccattaatcaaaggtag
tcaatagggaaactgatgatttattataggtgctaggacagtagataaaa
tattgaccaggattatcaatataaaacttcactaataacttagttatgat
ttttaactctccatcaacctttggagctgtgacatgtgatgaatgtttag
ccagataattactcctaatggatatgcatatgaacattctctgttgtaga
catcttgttagatttatgatttgaatttatgtatttatgtgtaaacgtgt
gatgaactctttaccatgtgatcacacattctgaaagatctataagttct
gaggacaaagagaagaggaaactttctcacactcacacactctccttatt
ccccttttcttgcattcttcttatcctgcttttcttagattccacttatc
ccattttttgtagatcccttatccctcttacttacaagccctttacccct
tcccttagagaggtttcataggaaacattttacaacttagaactaaacat
taaaatcagttttcaaagtgtccccttttcttcctgcaacttcaactagc
agcctgaaagttagagactcacactttgctgtgtagatagaacaaaggct
actttacttaatctccagctgttttatgatgaagtactaaaacaggttct
cacctcagtgttgttcagaagccaggtcggcaactgaggcaaagcaactt
agataggaaagaactttattataacaggaatcctaactatctagtacgat
taagtcttactccccaagccctgcaaatgtctcacctctattgctcaaga
gacagacagagagacccactggggctgtccctacatttcgaaaacagaga
ctgaactcaagtgcaattgaatctataaagcgcaaactga

gaattctttgtctacctctgtatcccatttttaatagagttatttggttc
tttagagtctaacttcttaagttctttgtatatattggttataagccctc
tatcagatgtagggttggtaaagatcttttctcaatctgttggttgcctt
tttgtcttattgacagtgttctttgccttacagaagctttccaattttat
gtggtctcatttgtagactcttgatcttacagcacaagctagtgatgttc
ttttcaagaatttttcccctttgcccatatgtttgaggctctaccctact
ttctcctctataattttcagctaatctgttttttgggggtcaggggggtc
cttgatctacttggacttcaggtttgtaccagaagataagaatggatcga
tttgcattcttctacatgctaaccaccagttgaccaaacaccatttgttg
aaaatgctgtcttttttccactgaatggttttagctccttttgtcaaaat
caagtgaccatagatgtgtgggttcatttctgggtcttcaattctattcc
attgatcaacctgcctgtcactgtaccaataccatgaagttttatcacag
tttgcgctgtagcacagcttgagatcagggatggtgaatctatcagaagt
tcttctattgttgagaatagttttcgctatcctagttttttttgttgttg
ttgttttgtttttggttttttttccagaatgaattagcaaattgcttttt
ctacctctgtgaagaattgagttgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112836818_112837916
seq2: B6Ng01-013F21.b_68_1136 (reverse)

seq1  TCAGTTTTGCGCTTTTATAAGATTTCCAAATGTGCAAATGTGTGTGTCTA  50
      |||| ||||||| ||||| |||||  |||   ||||  || ||     | 
seq2  TCAG-TTTGCGC-TTTAT-AGATT--CAA--TTGCACTTGAGT-----TC  38

seq1  TGTCTCTGTCTCTGAATATGTAAGGGGACCAGCCCCAGTGGGTCT-TCTT  99
       |||||||| |  ||| |||||  |||| |||||||||||||||| ||| 
seq2  AGTCTCTGTTTTCGAA-ATGTA--GGGA-CAGCCCCAGTGGGTCTCTCTG  84

seq1  TCTTGTTCTTGTTCTCCTTGAGGCAATAGAGGTGGAAGAACATCTGCAGG  149
      |||         ||| ||||| ||||||||||||  || |||| |||| |
seq2  TCT--------GTCT-CTTGA-GCAATAGAGGTG--AG-ACATTTGCA-G  120

seq1  GGCTTGGGGAAGTAAGACTTAATCGTACTAGATAGTTAGGATTCCTGTTT  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GGCTTGGGG-AGTAAGACTTAATCGTACTAGATAGTTAGGATTCCTGTT-  168

seq1  AATAATAAAGTTCTTTCCTATCTAAGTTGCTTTGCCTCAGTTGCCGACCT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATAATAAAGTTCTTTCCTATCTAAGTTGCTTTGCCTCAGTTGCCGACCT  217

seq1  GGCTTCTGAACAACACTGAGGTGAGAACCTG-TTTAGTACTTCATCATAA  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTTCTGAACAACACTGAGGTGAGAACCTGTTTTAGTACTTCATCATAA  267

seq1  AACAGCTGGAGATTAAGTAAAGTAGCCTTTGTTCTATCTACACAGC-AAG  347
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACAGCTGGAGATTAAGTAAAGTAGCCTTTGTTCTATCTACACAGCAAAG  317

seq1  TGTGAGTCTCTAACTTTCAGGCTGCTAGTTGAAGTTGCAGGAAGAAAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTCTAACTTTCAGGCTGCTAGTTGAAGTTGCAGGAAGAAAAGG  367

seq1  GGACACTTTGAAAACTGATTTTAATGTTTAGTTCTAAGTTGTAAAATGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTTGAAAACTGATTTTAATGTTTAGTTCTAAGTTGTAAAATGTT  417

seq1  TCCTATGAAACCTCTCTAAGGGAAGGGGTAAAGGGCTTGTAAGTAAGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAAACCTCTCTAAGGGAAGGGGTAAAGGGCTTGTAAGTAAGAGG  467

seq1  GATAAGGGATCTACAAAAAATGGGATAAGTGGAATCTAAGAAAAGCAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGGATCTACAAAAAATGGGATAAGTGGAATCTAAGAAAAGCAGGA  517

seq1  TAAGAAGAATGCAAGAAAAGGGGAATAAGGAGAGTGTGTGAGTGTGAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAATGCAAGAAAAGGGGAATAAGGAGAGTGTGTGAGTGTGAGAA  567

seq1  AGTTTCCTCTTCTCTTTGTCCTCAGAACTTATAGATCTTTCAGAATGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTCTTCTCTTTGTCCTCAGAACTTATAGATCTTTCAGAATGTGT  617

seq1  GATCACATGGTAAAGAGTTCATCACACGTTTACACATAAATACATAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATGGTAAAGAGTTCATCACACGTTTACACATAAATACATAAATT  667

seq1  CAAATCATAAATCTAACAAGATGTCTACAACAGAGAATGTTCATATGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATAAATCTAACAAGATGTCTACAACAGAGAATGTTCATATGCAT  717

seq1  ATCCATTAGGAGTAATTATCTGGCTAAACATTCATCACATGTCACAGCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTAGGAGTAATTATCTGGCTAAACATTCATCACATGTCACAGCTC  767

seq1  CAAAGGTTGATGGAGAGTTAAAAATCATAACTAAGTTATTAGTGAAGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGATGGAGAGTTAAAAATCATAACTAAGTTATTAGTGAAGTTT  817

seq1  TATATTGATAATCCTGGTCAATATTTTATCTACTGTCCTAGCACCTATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATAATCCTGGTCAATATTTTATCTACTGTCCTAGCACCTATAA  867

seq1  TAAATCATCAGTTTCCCTATTGACTACCTTTGATTAATGGTATTACAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATCAGTTTCCCTATTGACTACCTTTGATTAATGGTATTACAACC  917

seq1  TTTTGAAATGTGCTCTGAGAAGTAGAAGGCCTGATTACTATCTCAGAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGTGCTCTGAGAAGTAGAAGGCCTGATTACTATCTCAGAAGC  967

seq1  AGTTAACTGGTGATACTTAGAGACTGGCAGAGTTCTCATTACAGTTTTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTGGTGATACTTAGAGACTGGCAGAGTTCTCATTACAGTTTTGA  1017

seq1  CTATCAGAAAGGACCTAATAGCAGTTGCACTATAAAAAAGGCTTAATAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGAAAGGACCTAATAGCAGTTGCACTATAAAAAAGGCTTAATAAG  1067

seq1  TA  1099
      ||
seq2  TA  1069


| Home | SequenceCutter | Blast | Download |