BAC Information

Click to search

BAC

Clone NameB6Ng01-015C04
Chromosome3 (Build37)
Map Location 6,249,648 - 6,250,216
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015C04.bB6Ng01-015C04.g
ACCDH849478DH849479
length1,235569
definitionDH849478|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C04, 5' end.DH849479|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtctgtaccccatttttaatagggttttttggttctttgg
agtcaataaattagagttatttgtatatattagatattagcctctattac
ataaagggtttgtaaagatctttgcctaatctgttggttgccattttgtc
ctattgacaatctcctttgctttacagtagctttgcagttttatgaggtc
ccatttgtcaattcttgatcttagagcataagctatttgtgctctgttga
ggaaatttttccctgtgccatgtgctcaagtcttttctccactttctttt
ccattagtttcagtgtatctggttttatgaggaggtccttgatccacttg
gatttgtgatttacacaaggagataagaatggatcaatgtgcattcttct
acacattgaccaccagatgaactagtaccactcactgaaaatgctgtctt
ttatccactggatggttttagatcttttgtcaaagatcaagtgatctttg
ctgtctctgtatgaatatcatacagtttttctcactattgctctgtaatc
agcttgaggtcagggatggtgattcccccagaagttcttttactgttgag
aacagttttcactatcctgttttgttttgtttttttaaattccaaatata
caaattgccctaaccctatggagaatttagttgtaattttgatggagatt
gaattgaatttgtagattgctttcagcaagatggtcatttttaatatatt
aatccttccaatccatgagcacaggagatctttccatcttctgagatctt
tgatttctttcttcagagacttgaagttcttgtgctacagatctttcaca
tgcttagtgagagttacaccaaagtatttatattgtttgagtctattgtg
aagggtgttaatttcttaatttctttctcagcctgttcatttgtttgagt
gattttatatccagccactttgctgaagtgtttatcaggttaggaggttc
tcagtgaatttttggagttccactaaatataactatcctatcctcacgcg
aatagtggatctttccaattctttcttgagaaaaaaattgtaagtgtttt
tctggagcggaatgagaaaaggctgccaaggctgcttagacaaaacttga
aaacgtttatgtgcggtagataaatatattgcatggcatactgctggctt
ggcgtactacaaatgctccagtgctggcctcgtga
gaattctgatgcccatttattagtgagtacataccatgcatggataataa
ccaataaattcagaatacccagttcaagagaagaggggtaaatctctggt
tccaaaaattgggcaagttcaggcaagtctaagccccagaatcttccctc
ccacctggactgaggcaagaacatggatcagcagcagtttccagactttc
tcagctacttcctcagccgatctcccatcaacagtgtctagcccaaaagt
tcctgtaatagaaggaccctagaggtagaacaagataaaagccacccacc
ctggactgtactttaaatcaagcctaagagttcacttggttgtctatctt
ggtaatgggagacctcagcatgttgaacttcagcagaataaaatattctt
tgtgcttggatattacttgtgtcaggttatcattcttcagggaatcatgg
acccttaccatatacagaccataggaaggtttcaagaaggaaggcctaag
tgtgtgaatacttcacacccacttagaaggaggaacaaaataatcatggg
agcagagaactggaggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6249648_6250216
seq2: B6Ng01-015C04.g_68_636

seq1  GAATTCTGATGCCCATTTATTAGTGAGTACATACCATGCATGGATAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGCCCATTTATTAGTGAGTACATACCATGCATGGATAATAA  50

seq1  CCAATAAATTCAGAATACCCAGTTCAAGAGAAGAGGGGTAAATCTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAATTCAGAATACCCAGTTCAAGAGAAGAGGGGTAAATCTCTGGT  100

seq1  TCCAAAAATTGGGCAAGTTCAGGCAAGTCTAAGCCCCAGAATCTTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATTGGGCAAGTTCAGGCAAGTCTAAGCCCCAGAATCTTCCCTC  150

seq1  CCACCTGGACTGAGGCAAGAACATGGATCAGCAGCAGTTTCCAGACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGACTGAGGCAAGAACATGGATCAGCAGCAGTTTCCAGACTTTC  200

seq1  TCAGCTACTTCCTCAGCCGATCTCCCATCAACAGTGTCTAGCCCAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTTCCTCAGCCGATCTCCCATCAACAGTGTCTAGCCCAAAAGT  250

seq1  TCCTGTAATAGAAGGACCCTAGAGGTAGAACAAGATAAAAGCCACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATAGAAGGACCCTAGAGGTAGAACAAGATAAAAGCCACCCACC  300

seq1  CTGGACTGTACTTTAAATCAAGCCTAAGAGTTCACTTGGTTGTCTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGTACTTTAAATCAAGCCTAAGAGTTCACTTGGTTGTCTATCTT  350

seq1  GGTAATGGGAGACCTCAGCATGTTGAACTTCAGCAGAATAAAATATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGGGAGACCTCAGCATGTTGAACTTCAGCAGAATAAAATATTCTT  400

seq1  TGTGCTTGGATATTACTTGTGTCAGGTTATCATTCTTCAGGGAATCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGATATTACTTGTGTCAGGTTATCATTCTTCAGGGAATCATGG  450

seq1  ACCCTTACCATATACAGACCATAGGAAGGTTTCAAGAAGGAAGGCCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACCATATACAGACCATAGGAAGGTTTCAAGAAGGAAGGCCTAAG  500

seq1  TGTGTGAATACTTCACACCCACTTAGAAGGAGGAACAAAATAATCATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATACTTCACACCCACTTAGAAGGAGGAACAAAATAATCATGGG  550

seq1  AGCAGAGAACTGGAGGAAC  569
      |||||||||||||||||||
seq2  AGCAGAGAACTGGAGGAAC  569