BAC Information

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BAC

Clone NameB6Ng01-015O24
Chromosome3 (Build37)
Map Location 144,088,852 - 144,231,177
singlet/doubletdoublet
Overlap geneLOC545572, Hs2st1
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4
Downstream geneSep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015O24.bB6Ng01-015O24.g
ACCDH850058DH850059
length1,0521,094
definitionDH850058|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O24, 5' end.DH850059|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,088,852 - 144,089,913)(144,230,088 - 144,231,177)
sequence
gaattcataaactgatcctgggaatgaagggcttggacctgcccccttca
ccctgaggtagccaagggcacagagccatgttccagccctgaatctcagt
atcagatggcaacaagaataatgctatcatatactcactggagaatgatg
cgtgatgttaggaagagaccagaagggcaataaggaaacacaaagggccc
ccacattctcctcccagtttctttctgttgaaggacacctctgaggtaca
gccccagctggaagccatacaagtgccacagcaccaggccccatatctgt
taccaagccctaccaaagacacatgggaagactttcaaagccaactgtcc
cctctgcttctcacagctcccacagcctgcatggctctacctgtttctag
ccatgtgtctgagaaagtgtcctggtttcccttacctgccaaatgcagca
gatggctctatctttctcagaagatagagactgaagcaagatgctaaaga
catagcgcttacatgtgagaagcagtacatggccaaatagcttttctctc
cttttctttctaagttttatttattttatatatttgagtacactgttgct
gtcttcacataccccagaagagggcatcagatcccattacagatggttgt
cagcccccatgtggttgctgggaattgaactcacgatctctggaagagca
gtcacatgttcttaaccactgagccatctctctagcccagcttttctctt
tcaagaacgtgcgtgcttgggagacatgctgggcaaggtggcctgcctct
ctgtgctctctcctgagaacaggtggaagggagcctgttggtgggatggg
gacgcttcgagttacctggtccgtccttgaggagtgcactaaatttcaag
ttgtgggctttcatttaaataaaataaaacaaacacaaacccaggcaggt
gagactgtgataccagtggagtaattccgtgtaagcactcagatgtcact
ccacctgtgaccattggctgttgatcactactggtgagacaagcaccggc
at
gaattctctagctgtagaggctcaacctgattgaatgtgcctattgtctt
cctgacctaacagtttcctctccagcgcttggaagctgtttgtggacgcc
accagaatagctgaggatatagaacaccacaggtagaaccatgcgtaccc
tcatagttttcataaatgggaaaaaaaaagtcctgtcaggaataagtgcg
tccaaatgagtatctatgagggaaacagcaattatgcgccagaataaata
attctgagagataggccagggctgaccacggtgggccaggcctgtagttc
agtactctaaaagctgacaccccaggatggtgagttcaagaccagtatgg
gctgctgcatagcattatcctgtcttaaagaaaaaaaaaaaagagagaaa
aaatagctttcaaagtaacccagagatgccggcatgacagataatataac
tttatatcagctcattaatcttctgattagatttttttttgtaaatattt
ttatttttaaaagacacaggtgttatgttgtgtttcccaggctgggccag
aactcctggcctcaagtgttcttccttcttcatccttgagagaaattgta
aatgtccttcaccttgcctccttcccactcccacccccttataaaaccag
tattgcttaaaagtcagtactgagacactgaccgttatccggactcccca
ggaaagagacaaaagactcaggtcgtgactggataactgttgtctgtgat
attcttatctaatcttccaagaactccagagataactatttttcaaatac
agaataatccttaaattatatgatcaggccaggatttgtatcaccagtaa
gtaactggtggagtcagaattggaaggcaggtatgtttgctttctaattg
aggactcctgtaattacacaagcggtttgagactttgtaggtggcattct
actgcagttggagctctttgatagcatttataattggtgttattcgatgc
atatattgctgagatgattattgttctgagagaaacctcatttctgaaca
aagaattgctataaatgccttgcccttttgctttaattccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144088852_144089913
seq2: B6Ng01-015O24.b_43_1094

seq1  GAATTCATAAACTGATCCTGGGAATGAAGGGCTTGGACCTGCCCCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACTGATCCTGGGAATGAAGGGCTTGGACCTGCCCCCTTCA  50

seq1  CCCTGAGGTAGCCAAGGGCACAGAGCCATGTTCCAGCCCTGAATCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGTAGCCAAGGGCACAGAGCCATGTTCCAGCCCTGAATCTCAGT  100

seq1  ATCAGATGGCAACAAGAATAATGCTATCATATACTCACTGGAGAATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGGCAACAAGAATAATGCTATCATATACTCACTGGAGAATGATG  150

seq1  CGTGATGTTAGGAAGAGACCAGAAGGGCAATAAGGAAACACAAAGGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGTTAGGAAGAGACCAGAAGGGCAATAAGGAAACACAAAGGGCCC  200

seq1  CCACATTCTCCTCCCAGTTTCTTTCTGTTGAAGGACACCTCTGAGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCTCCTCCCAGTTTCTTTCTGTTGAAGGACACCTCTGAGGTACA  250

seq1  GCCCCAGCTGGAAGCCATACAAGTGCCACAGCACCAGGCCCCATATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTGGAAGCCATACAAGTGCCACAGCACCAGGCCCCATATCTGT  300

seq1  TACCAAGCCCTACCAAAGACACATGGGAAGACTTTCAAAGCCAACTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCCTACCAAAGACACATGGGAAGACTTTCAAAGCCAACTGTCC  350

seq1  CCTCTGCTTCTCACAGCTCCCACAGCCTGCATGGCTCTACCTGTTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCTCACAGCTCCCACAGCCTGCATGGCTCTACCTGTTTCTAG  400

seq1  CCATGTGTCTGAGAAAGTGTCCTGGTTTCCCTTACCTGCCAAATGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTCTGAGAAAGTGTCCTGGTTTCCCTTACCTGCCAAATGCAGCA  450

seq1  GATGGCTCTATCTTTCTCAGAAGATAGAGACTGAAGCAAGATGCTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCTATCTTTCTCAGAAGATAGAGACTGAAGCAAGATGCTAAAGA  500

seq1  CATAGCGCTTACATGTGAGAAGCAGTACATGGCCAAATAGCTTTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCGCTTACATGTGAGAAGCAGTACATGGCCAAATAGCTTTTCTCTC  550

seq1  CTTTTCTTTCTAAGTTTTATTTATTTTATATATTTGAGTACACTGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCTAAGTTTTATTTATTTTATATATTTGAGTACACTGTTGCT  600

seq1  GTCTTCACATACCCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACATACCCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGT  650

seq1  CAGCCCCCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGGAAGAGCA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCCCCCATGTGGTTGCTGGGAATTGAACTCACGATCTCTGGAAGAGCA  700

seq1  GTCACATGTTCTTAACCACTGAGCCATCTCTCTAGCCCAGCTTTTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGTTCTTAACCACTGAGCCATCTCTCTAGCCCAGCTTTTCTCTT  750

seq1  TCAAGAACGTGCGTGCTTGGGAGACATGCTGGCCAAGGTGGCCTGCCTCT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAGAACGTGCGTGCTTGGGAGACATGCTGGGCAAGGTGGCCTGCCTCT  800

seq1  CTGTGCTCTCTCCTGAGAACAGGTGGAAGGGAGCCTGTTGGTGGGATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTCTCCTGAGAACAGGTGGAAGGGAGCCTGTTGGTGGGATGGG  850

seq1  GACGCTTCGAGTTACCTGGTCCGTCCTTGAGGAGTGCACTAAATTTCAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACGCTTCGAGTTACCTGGTCCGTCCTTGAGGAGTGCACTAAATTTCAAG  900

seq1  TTGTGGGCTTTCATTTAAAATAAAAATAAAAACAAACACAAAACCCAAGG  950
      |||||||||||||||| ||||||||   ||||||||||||||  || |||
seq2  TTGTGGGCTTTCATTT-AAATAAAA--TAAAACAAACACAAA--CCCAGG  945

seq1  CAGGTGAGACTTGTGATAACCAAGTGAGTAAATTCCGTGTAAGCCACTCA  1000
      |||||||||| |||||| ||||   |||| ||||||||||||| ||||||
seq2  CAGGTGAGAC-TGTGAT-ACCAGTGGAGT-AATTCCGTGTAAG-CACTCA  991

seq1  GATGTTCACTCCA-CTGTGACCATTGGCTGTGAATCACTACTGGTGAGGA  1049
      |||| |||||||| |||||||||||||||||  |||||||||||||||  
seq2  GATG-TCACTCCACCTGTGACCATTGGCTGTTGATCACTACTGGTGAGAC  1040

seq1  CAGCACCGAGCAT  1062
       ||||||| ||||
seq2  AAGCACCG-GCAT  1052

seq1: chr3_144230088_144231177
seq2: B6Ng01-015O24.g_67_1160 (reverse)

seq1  ACATGG-ATATAAGC-AAAGGGCAAGGCA-TTATAGCAATTCCTTTGTGT  47
      |||||| ||  |||| ||||||||||||| ||||||||||| |||||| |
seq2  ACATGGAATTAAAGCAAAAGGGCAAGGCATTTATAGCAATT-CTTTGT-T  48

seq1  CAGAAATTGAGTTT-TCTCAGAACAATATTCATTCTCAGCAATATATGCA  96
      |||||||   |||| ||||||||||||| ||| |||||||||||||||||
seq2  CAGAAATGAGGTTTCTCTCAGAACAATAATCA-TCTCAGCAATATATGCA  97

seq1  TCG-ATAACACAATTTATAAATGCTATTCAAAGAGCT-CAACTGCAGTAG  144
      ||| ||||||| | |||||||||||| |||||||||| ||||||||||||
seq2  TCGAATAACACCAATTATAAATGCTA-TCAAAGAGCTCCAACTGCAGTAG  146

seq1  AATGCCA-CTACAAAGTCTCAAACCGCTTGTGTAATTACAGGAGTCCTCA  193
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACCTACAAAGTCTCAAACCGCTTGTGTAATTACAGGAGTCCTCA  196

seq1  ATTAGGAAGCAAACATACCTGCCTTCCAATTCTGACTCCACCAGTTACTT  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGCAAACATACCTGCCTTCCAATTCTGACTCCACCAGTTACTT  246

seq1  ACTGGTGATAC-AATCCTGGCCTGATCATATAATTTAAGGATTATTCTGT  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGATACAAATCCTGGCCTGATCATATAATTTAAGGATTATTCTGT  296

seq1  ATTTGAAAAATAGTTATCTCTGGAGTTCTTGGAAGATTAGATAAGAATAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAATAGTTATCTCTGGAGTTCTTGGAAGATTAGATAAGAATAT  346

seq1  CACAGACAACAGTTATCCAGTCACGACCTGAGTCTTTTGTCTCTTTCCTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAACAGTTATCCAGTCACGACCTGAGTCTTTTGTCTCTTTCCTG  396

seq1  GGGAGTCCGGATAACGGTCAGTGTCTCAGTACTGACTTTTAAGCAATACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCGGATAACGGTCAGTGTCTCAGTACTGACTTTTAAGCAATACT  446

seq1  GGTTTTATAAGGGGGTGGGAGTGGGAAGGAGGCAAGGTGAAGGACATTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATAAGGGGGTGGGAGTGGGAAGGAGGCAAGGTGAAGGACATTTA  496

seq1  CAATTTCTCTCAAGGATGAAGAAGGAAGAACACTTGAGGCCAGGAGTTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCTCAAGGATGAAGAAGGAAGAACACTTGAGGCCAGGAGTTCT  546

seq1  GGCCCAGCCTGGGAAACACAACATAACACCTGTGTCTTTTAAAAATAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCCTGGGAAACACAACATAACACCTGTGTCTTTTAAAAATAAAA  596

seq1  ATATTTACAAAAAAAAATCTAATCAGAAGATTAATGAGCTGATATAAAGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAAAAAAAAATCTAATCAGAAGATTAATGAGCTGATATAAAGT  646

seq1  TATATTATCTGTCATGCCGGCATCTCTGGGTTACTTTGAAAGCTATTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATCTGTCATGCCGGCATCTCTGGGTTACTTTGAAAGCTATTTTT  696

seq1  TCTCTCTTTTTTTTTTTTCTTTAAGACAGGATAATGCTATGCAGCAGCCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTTTTTTTTTCTTTAAGACAGGATAATGCTATGCAGCAGCCC  746

seq1  ATACTGGTCTTGAACTCACCATCCTGGGGTGTCAGCTTTTAGAGTACTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTCTTGAACTCACCATCCTGGGGTGTCAGCTTTTAGAGTACTGA  796

seq1  ACTACAGGCCTGGCCCACCGTGGTCAGCCCTGGCCTATCTCTCAGAATTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGCCTGGCCCACCGTGGTCAGCCCTGGCCTATCTCTCAGAATTA  846

seq1  TTTATTCTGGCGCATAATTGCTGTTTCCCTCATAGATACTCATTTGGACG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGGCGCATAATTGCTGTTTCCCTCATAGATACTCATTTGGACG  896

seq1  CACTTATTCCTGACAGGACTTTTTTTTTCCCATTTATGAAAACTATGAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTCCTGACAGGACTTTTTTTTTCCCATTTATGAAAACTATGAGG  946

seq1  GTACGCATGGTTCTACCTGTGGTGTTCTATATCCTCAGCTATTCTGGTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCATGGTTCTACCTGTGGTGTTCTATATCCTCAGCTATTCTGGTGG  996

seq1  CGTCCACAAACAGCTTCCAAGCGCTGGAGAGGAAACTGTTAGGTCAGGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCACAAACAGCTTCCAAGCGCTGGAGAGGAAACTGTTAGGTCAGGAA  1046

seq1  GACAATAGGCACATTCAATCAGGTTGAGCCTCTACAGCTAGAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGGCACATTCAATCAGGTTGAGCCTCTACAGCTAGAGAATTC  1094