BAC Information

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BAC

Clone NameB6Ng01-016D20
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,420 - 41,059,69552,632,415 - 52,633,598
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D20.bB6Ng01-016D20.g
ACCDH850262DH850263
length9381,176
definitionDH850262|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D20, 5' end.DH850263|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,420 - 41,059,695)(52,632,415 - 52,633,598)
sequence
gaattctttgtttacctttgattttctggggtccagcttcttgagatctt
tgtatatattggatattagtcccctatcagatttaggataggtaaagatc
ctttcccaatctgttggtgttctttttgtcttattgacggtgtcttttgc
cttacagaagctttgcaattttatgaggtcccatttgtctattctcaacc
ttacagcacaagccattgctgttctattcaggaatttttcccctgtgccc
atatcttcgaggcttttccccactttctcctctataagtttcactgactc
tgtttttttttttttttccattttttattaggtatttcattcatttacat
ttgcaatgctataccaaaagtcccccatagccacccaccccctctcccct
acccacccactccccttttatggccctggcgttcccctgtactggggcat
ataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactag
gccatcttttgatgcatatgcagctagagtcaagagctccggggtactgg
ttagttcataatgttgttccacctatagggttgcagatccctttagcttc
tttggtactttctctagctccttcattgggggccatgtgatccatccaat
agccgactgtgagcatccacttctatgtttgctaggcccaggcatactct
gacaagagacagctatatcagggtcctttcagcataatcttgctagtgta
tgcaatggtgtcagcatttggaagctgattatgggatggatccccggata
tgctagtgtctacatggtccatccttttatctcagctccaaactttgtct
ctgtaactccttccaagggtgttttgttcccacttctaaggaggggcata
gtgtcacacttcagtcttcatttttcttgagtttcatg
gaattccagtagacagctttttttccatatcaaccttttattttcaacac
ttgctggtgctgagaaatataaaactaggacgttgatctcatgagttgca
atgcataactttaatgacatctattttgcctagttggggaactttttaat
aactcttgatacttagctgtggcccagatggacaatagtgttggagaact
ggttgtggataaacttagcacagttataaattcaagaaactacattagtt
actgtctgtcctgagatgagaaacaaggtggaattcagttccttctgaat
cactgaagcaaaattactaagcgcgtccccagaggctggctagtgctctt
cattgctctgcaccctcaacaatgtatcttttggaccaccaagaccttca
ttgtgaactgattaatctggtcagttagaaagagacttagtatattcttg
taactcttcacaagggacacttttccctatgtgtgttatatcttggctat
ggtcaggatatggaaggattttaaagccatttaagcaagccttcccacac
aataatcagttctatcacaaaatcttatatttctttgaaagatttccttt
cctcagtagcttagaaatgtggtcttaaagagttccttggggaaaggtca
tttcctaaattctccactatccgagcccttagaggagattaaaaactact
agtagaggttaaaaccctgggagaaagtgttactgcctcttcctaggaaa
acagtgtaaggcaagtaagtaagaagaggcaggcttggggcaagcatcct
tacccaccaaagcagtaccccagctcatggcgtgtcagttgttctcttgc
aagacttcaagtttgttgaattaaaaaaaataaaataaaaaacaaacctt
aatgttttataaggaaaataaaacaagtaaagttgctgggcaaggcataa
tttaaaacacaattcaaataaaacctgtaactatattcctgtggtttaaa
cttacttcactgtagattacagtctctgcgaccacattgcagaagtcagt
gtgctgttagcatgttggtgttaacgaaagttcttttccttttttaagaa
tgaaaacacagggtagtttccttgtggtgtacctctagaagttaagccac
tgcttaatgggtaattaaatgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059420_41059695
seq2: B6Ng01-016D20.b_60_336 (reverse)

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACA  50
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACA  50

seq1  GGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAG  100
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  GGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGGTTGAG  100

seq1  AATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAG  150
      ||||||||||||||||||||| ||| ||||||||||||| ||||||||||
seq2  AATAGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAG  150

seq1  ACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTT  199
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ACACCGTCAATAAGACAAAAAGAACACCAACAGATTGGGAAAGGATCTTT  200

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACT  249
      |||||||||||||| ||||||||||||||||||||||||||  |||| ||
seq2  ACCTATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGATCT  250

seq1  CAAGAAGGTGGATTCCAGAAAATCAAA  276
      ||||||| ||||  |||||||||||||
seq2  CAAGAAGCTGGACCCCAGAAAATCAAA  277

seq1: chr1_52632415_52633598
seq2: B6Ng01-016D20.g_66_1241

seq1  GAATTCCAGTAGACAGCTTTTTTTCCATATCAACCTTTTATTTTCAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGACAGCTTTTTTTCCATATCAACCTTTTATTTTCAACAC  50

seq1  TTGCTGGTGCTGAGAAATATAAAACTAGGACGTTGATCTCATGAGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGCTGAGAAATATAAAACTAGGACGTTGATCTCATGAGTTGCA  100

seq1  ATGCATAACTTTAATGACATCTATTTTGCCTAGTTGGGGAACTTTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAACTTTAATGACATCTATTTTGCCTAGTTGGGGAACTTTTTAAT  150

seq1  AACTCTTGATACTTAGCTGTGGCCCAGATGGACAATAGTGTTGGAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGATACTTAGCTGTGGCCCAGATGGACAATAGTGTTGGAGAACT  200

seq1  GGTTGTGGATAAACTTAGCACAGTTATAAATTCAAGAAACTACATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGATAAACTTAGCACAGTTATAAATTCAAGAAACTACATTAGTT  250

seq1  ACTGTCTGTCCTGAGATGAGAAACAAGGTGGAATTCAGTTCCTTCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGTCCTGAGATGAGAAACAAGGTGGAATTCAGTTCCTTCTGAAT  300

seq1  CACTGAAGCAAAATTACTAAGCGCGTCCCCAGAGGCTGGCTAGTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGCAAAATTACTAAGCGCGTCCCCAGAGGCTGGCTAGTGCTCTT  350

seq1  CATTGCTCTGCACCCTCAACAATGTATCTTTTGGACCACCAAGACCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTGCACCCTCAACAATGTATCTTTTGGACCACCAAGACCTTCA  400

seq1  TTGTGAACTGATTAATCTGGTCAGTTAGAAAGAGACTTAGTATATTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTGATTAATCTGGTCAGTTAGAAAGAGACTTAGTATATTCTTG  450

seq1  TAACTCTTCACAAGGGACACTTTTCCCTATGTGTGTTATATCTTGGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTCACAAGGGACACTTTTCCCTATGTGTGTTATATCTTGGCTAT  500

seq1  GGTCAGGATATGGAAGGATTTTAAAGCCATTTAAGCAAGCCTTCCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGATATGGAAGGATTTTAAAGCCATTTAAGCAAGCCTTCCCACAC  550

seq1  AATAATCAGTTCTATCACAAAATCTTATATTTCTTTGAAAGATTTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAGTTCTATCACAAAATCTTATATTTCTTTGAAAGATTTCCTTT  600

seq1  CCTCAGTAGCTTAGAAATGTGGTCTTAAAGAGTTCCTTGGGGAAAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTAGCTTAGAAATGTGGTCTTAAAGAGTTCCTTGGGGAAAGGTCA  650

seq1  TTTCCTAAATTCTCCACTATCCGAGCCCTTAGAGGAGATTAAAAACTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAATTCTCCACTATCCGAGCCCTTAGAGGAGATTAAAAACTACT  700

seq1  AGTAGAGGTTAAAACCCTGGGAGAAAGTGTTACTGCCTCTTCCTAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGTTAAAACCCTGGGAGAAAGTGTTACTGCCTCTTCCTAGGAAA  750

seq1  ACAGTGTAAGGCAAGTAAGTAAGAAGAGGCAGGCTTGGGGCAAGCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAAGGCAAGTAAGTAAGAAGAGGCAGGCTTGGGGCAAGCATCCT  800

seq1  TACCCACC-AAGCAGTACCCCAGCTCATGGCGTGTCAGTTGTTCTCTTGC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCAAAGCAGTACCCCAGCTCATGGCGTGTCAGTTGTTCTCTTGC  850

seq1  AAGACTTCAAGTTTGTTGAATTAAAAAAAATAAAATAAAAAACAAACC-T  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGACTTCAAGTTTGTTGAATTAAAAAAAATAAAATAAAAAACAAACCTT  900

seq1  AATGGTTTATAAGGAAAATAAAACAAGGTAAGTTGCT-GGCAAGGCATAA  947
      |||| ||||||||||||||||||||||  |||||||| ||||||||||||
seq2  AATGTTTTATAAGGAAAATAAAACAAGTAAAGTTGCTGGGCAAGGCATAA  950

seq1  TTTAAAAACACAATTCAAATAAAACCTGTAACTATATTCCTGTGTTTAAA  997
      ||| |||||||||||||||||||||||||||||||||||||||| || ||
seq2  TTT-AAAACACAATTCAAATAAAACCTGTAACTATATTCCTGTGGTTTAA  999

seq1  ACTTACTTCACTGTAGATTTACAGTCTCTGCAAACACCATTTGCAGAAGT  1047
      ||||||||||||||||| ||||||||||||| | |||   ||||||||||
seq2  ACTTACTTCACTGTAGA-TTACAGTCTCTGCGACCAC--ATTGCAGAAGT  1046

seq1  CAGTGTGCTGTTAGCATG-TGGTGTTAACAGAAGTCCTTTCCTTTGTCCT  1096
      |||||||||||||||||| ||||||||||  |||| |||| | || |  |
seq2  CAGTGTGCTGTTAGCATGTTGGTGTTAACGAAAGTTCTTTTCCTTTT--T  1094

seq1  AAAGAATGAGAACACAGGGAAGTTCCTATGTGGTGTTACTCTCAGAAGTT  1146
       |||||||| ||||||||| |||| |  ||||||||  |||| |||||||
seq2  TAAGAATGAAAACACAGGGTAGTTTCCTTGTGGTGTACCTCT-AGAAGTT  1143

seq1  AAAGCTACTGCTTATAGTGGTGAAATATAAATGTGCTC  1184
       |||| ||||||  || ||| | ||| |||||||||||
seq2  -AAGCCACTGCT--TAATGG-GTAAT-TAAATGTGCTC  1176