BAC Information

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BAC

Clone NameB6Ng01-016G18
Chromosome3 (Build37)
Map Location 139,528,931 - 139,645,314
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016G18.bB6Ng01-016G18.g
ACCDH850388DH850389
length1,1401,123
definitionDH850388|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G18, 5' end.DH850389|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,528,931 - 139,530,098)(139,644,164 - 139,645,314)
sequence
gaattctgatactttatgtgtcaactatgctaattaaatgccttaatgag
ccatgagtaccatgaatttaccaaggctttaccttggcacatcctgaaat
tttgtagacttggatattgtatgaaagagtaggacaaagataaacggata
aacttaaattcagttctgcctctgtgcttctgtcccttttgaatatcatt
gcaaggtatgatgcatttgggcatattctctgcttcagcctattgaatat
aatagaatcagttgcctgtaacagtctgtcaatcgcattgtgtttctgct
gtcttcttgtcctagaaattcatcatgttgaaagcatttgtgttattgaa
agcaatgaagcctggtagtgctggccattaccattaccttacctcattta
catcttagccctgcatcctgccaggtccttgctcccctctgaagcctcca
tcactccagtgcatctcatcaggcaccatctcagccacacagaggggagc
ttgctgtgcacaaatgagttgcatacaaaacatgggttctggggagttta
gagcctgctgggcttggtcccaagccagcagccactgggatgacccagat
ccaggcctggctgtccctgctctgtgctttgctacttccaggatggccat
tgttgcatttccatcaggatgggaaaacacagcatgccttctgtgggtgg
tgtaatttcctctgttggaagaatgagggcacaatgggacatttaaaacc
ccaaagagcaaaagggtgagtgtaacaaagcagaaaatatgtgcctggtg
ttccattatgctagcaagtattgcttcctgtgtgtgtgtgggaacagtca
gaaaattatatactcacctgcctggttataggcaacaggcacagcttaat
gcagccatcaaatacaataggggaaactgcagcatttatttagtctacgg
ttcatcaaagcagaaacagtcagaatcaataaataccattcattgtctgg
tcatttattactataaatgacttcttatacccagtaatgcttatcaatta
aacttaggaaaaaacccaagttgtaaaaaaaatttctgacttctcttgaa
cattttttccgttcatcattgcttaaacgatgattatcta
gaattcttctccttatttcagcgtcacagctgctaattcatgaaaaactc
tacaaaacaaattaaagactcatgtgcacaaacactgcgtctttggttta
aaccaagattaactgaaatttgaaaaagaagacatgaaatcagttcagtt
ggacttgagcaaagctttttttttttttctttactttacccaaggccaac
taaacattggtattaagactggaaacaaaaactgtgtttttgttccccaa
attccactcacttctttactatttaatttcaacttttaaaaatcatattc
taaaatgtgattcagatttatattttccttctgtatatttaatcatatga
ctccttaggataaaattttctgaaaaagtttatattgtgctttatattta
aggtataatttgcaaagtaatttatacctgtttatcctggctttctcgcc
gtacctgtctgcttcttatcacaatgactatggacgaatcctctgaaatg
gcaagcaaacatttgattacatggtgttctttgatgagatttgccttcat
tatggtatctcttcactgtaagacaagagtaactaggacagtcttgtcct
gtccctctcacccctcctcctcttctccctcttcctccatcactattatc
tcccctttctctttcatttttgctcagtaaatcaaaaactggtaaattcc
ccatcttcctaattttcctgaaatacaatgaaatattgttgaaatcttat
agaatttaactgccatgtttcttctaacacacacacacacacacacacac
acacacacacgcgcgcgcgcgcgcctaataaaaccagcatttctctaagg
ttctaaacaggcttgaaaacttcttcacatagcttagaatctaacacaca
attaatgaggaataatgacactatatttgatacacttcttcagagtggtt
ttagctaggtgctatttaaaaccatttttctaaatctatactagtatatt
gtactttattctaatacatactctatactacagctgtgaagatctaccct
tatcaagatgcttctttgtgatgcaattgactatacgattccagctatca
acccgagaacatggctctggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139528931_139530098
seq2: B6Ng01-016G18.b_46_1185

seq1  GAATTCTGATACTTTATGTGTCAACTATGCTAATTAAATGCCTTAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACTTTATGTGTCAACTATGCTAATTAAATGCCTTAATGAG  50

seq1  CCATGAGTACCATGAATTTACCAAGGCTTTACCTTGGCACATCCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTACCATGAATTTACCAAGGCTTTACCTTGGCACATCCTGAAAT  100

seq1  TTTGTAGACTTGGATATTGTATGAAAGAGTAGGACAAAGATAAACGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACTTGGATATTGTATGAAAGAGTAGGACAAAGATAAACGGATA  150

seq1  AACTTAAATTCAGTTCTGCCTCTGTGCTTCTGTCCCTTTTGAATATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTCAGTTCTGCCTCTGTGCTTCTGTCCCTTTTGAATATCATT  200

seq1  GCAAGGTATGATGCATTTGGGCATATTCTCTGCTTCAGCCTATTGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTATGATGCATTTGGGCATATTCTCTGCTTCAGCCTATTGAATAT  250

seq1  AATAGAATCAGTTGCCTGTAACAGTCTGTCAATCGCATTGTGTTTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATCAGTTGCCTGTAACAGTCTGTCAATCGCATTGTGTTTCTGCT  300

seq1  GTCTTCTTGTCCTAGAAATTCATCATGTTGAAAGCATTTGTGTTATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGTCCTAGAAATTCATCATGTTGAAAGCATTTGTGTTATTGAA  350

seq1  AGCAATGAAGCCTGGTAGTGCTGGCCATTACCATTACCTTACCTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAGCCTGGTAGTGCTGGCCATTACCATTACCTTACCTCATTTA  400

seq1  CATCTTAGCCCTGCATCCTGCCAGGTCCTTGCTCCCCTCTGAAGCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCCCTGCATCCTGCCAGGTCCTTGCTCCCCTCTGAAGCCTCCA  450

seq1  TCACTCCAGTGCATCTCATCAGGCACCATCTCAGCCACACAGAGGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAGTGCATCTCATCAGGCACCATCTCAGCCACACAGAGGGGAGC  500

seq1  TTGCTGTGCACAAATGAGTTGCATACAAAACATGGGTTCTGGGGAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGCACAAATGAGTTGCATACAAAACATGGGTTCTGGGGAGTTTA  550

seq1  GAGCCTGCTGGGCTTGGTCCCAAGCCAGCAGCCACTGGGATGACCCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCTGGGCTTGGTCCCAAGCCAGCAGCCACTGGGATGACCCAGAT  600

seq1  CCAGGCCTGGCTGTCCCTGCTCTGTGCTTTGCTACTTCCAGGATGGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGGCTGTCCCTGCTCTGTGCTTTGCTACTTCCAGGATGGCCAT  650

seq1  TGTTGCATTTCCATCAGGATGGGAAAACACAGCATGCCTTCTGTGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATTTCCATCAGGATGGGAAAACACAGCATGCCTTCTGTGGGTGG  700

seq1  TGTAATTTCCTCTGTTGGAAGAATGAGGGCACAATGGGACATTTAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCCTCTGTTGGAAGAATGAGGGCACAATGGGACATTTAAAACC  750

seq1  CCAAAGAGCAAAAGGGTGAGTGTAACAAAGCAGAAAATATGTGCCTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGCAAAAGGGTGAGTGTAACAAAGCAGAAAATATGTGCCTGGTG  800

seq1  TTCCATTATGCTAGCAAGTATTGCTTCCTGTGTGTGTGTGGGAACAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTATGCTAGCAAGTATTGCTTCCTGTGTGTGTGTGGGAACAGTCA  850

seq1  GAAAATTATATACTCACCTGCCTGGTTATAGGCAACAGGCACAGCTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATATACTCACCTGCCTGGTTATAGGCAACAGGCACAGCTTAAT  900

seq1  GCAGCCATCAAATACAATAGGGGAAAACTGCAGCATTTATTTAGTCTAAG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||| | 
seq2  GCAGCCATCAAATACAATAGGGG-AAACTGCAGCATTTATTTAGTCT-AC  948

seq1  GGTTCAATCAAAGCAGAAAACAGTCAGAAATCAATAAATAACCATTCAAT  1000
      ||||| |||||||||| |||||||||| ||||||||||| ||||||| ||
seq2  GGTTC-ATCAAAGCAG-AAACAGTCAG-AATCAATAAAT-ACCATTC-AT  993

seq1  TGTCTGGTCATTTATTTACTAATAAATGACTTCTTATAACCCAGTAAATG  1050
      |||||||||||||| ||||| |||||||||||||||| ||||||| ||||
seq2  TGTCTGGTCATTTA-TTACT-ATAAATGACTTCTTAT-ACCCAGT-AATG  1039

seq1  CTTAATCACATTAAACCTTAGGAAAAAAAACCCAAGTTGTAAAAAAAAAA  1100
      ||| |||| |||||| ||||||  ||||||||||||||||||||||||  
seq2  CTT-ATCA-ATTAAA-CTTAGG--AAAAAACCCAAGTTGTAAAAAAAA--  1082

seq1  ATTTTCTGACTTCCTCTGAAACATTTTCTTTCCTGTTCATCAATATTGCT  1150
        |||||||||| ||||  |||||||  ||||| |||||||   ||||||
seq2  --TTTCTGACTT-CTCTTGAACATTT--TTTCC-GTTCATC---ATTGCT  1123

seq1  AAAACGATGATTTATCTA  1168
       ||||||||| |||||||
seq2  TAAACGATGA-TTATCTA  1140

seq1: chr3_139644164_139645314
seq2: B6Ng01-016G18.g_64_1186 (reverse)

seq1  ACCCCAGAGCCATTTGTTCTCTGTGTTTGGATGAGTTGTGAAAATCTGTA  50
      ||||||||||||  ||||||| | |||  ||| || ||    |||| || 
seq2  ACCCCAGAGCCA--TGTTCTC-GGGTT--GAT-AGCTG---GAATC-GT-  39

seq1  ATAGTCCTATCTGCTACACAAAGAAGCATCTTTGATAAAGGGTAAGATCT  100
      ||||||  |  |||  |||||||||||||| ||||| |||||| ||||||
seq2  ATAGTC--AATTGCATCACAAAGAAGCATC-TTGAT-AAGGGT-AGATCT  84

seq1  TCACCAAGCTGTAGGTATAAGAGTATGTATTTAGAATAAAGTTACAAATT  150
      ||||  ||||||| |||| |||||||||| ||||||||||| |||||  |
seq2  TCAC--AGCTGTA-GTAT-AGAGTATGTA-TTAGAATAAAG-TACAA--T  126

seq1  ATACTTAGTTATAGAATTTAGAAAAATGGTTTTAAATAGCACCTAGCTTA  200
      |||| ||| ||||| |||||||||||||||||||||||||||||||| ||
seq2  ATAC-TAG-TATAG-ATTTAGAAAAATGGTTTTAAATAGCACCTAGC-TA  172

seq1  AAACCACTCTGAAG-AGTGTATCAAATATAGTGTTCATTATTCCTCATTA  249
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AAACCACTCTGAAGAAGTGTATCAAATATAGTG-TCATTATTCCTCATTA  221

seq1  ATTGTGTGTTAGATTCTAAGCTATGTGAAGAAGTTTTCAAGCCTGTTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGTTAGATTCTAAGCTATGTGAAGAAGTTTTCAAGCCTGTTTAG  271

seq1  AACCTTAGAGAAATGCTGGTTTTATTAGGCGCGCGCGCGCGCGTGTGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGAGAAATGCTGGTTTTATTAGGCGCGCGCGCGCGCGTGTGTGT  321

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTTAGAAGAAACATGGCAGTTAAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTTAGAAGAAACATGGCAGTTAAATT  371

seq1  CTATAAGATTTCAACAATATTTCATTGTATTTCAGGAAAATTAGGAAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGATTTCAACAATATTTCATTGTATTTCAGGAAAATTAGGAAGAT  421

seq1  GGGGAATTTACCAGTTTTTGATTTACTGAGCAAAAATGAAAGAGAAAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTTACCAGTTTTTGATTTACTGAGCAAAAATGAAAGAGAAAGGG  471

seq1  GAGATAATAGTGATGGAGGAAGAGGGAGAAGAGGAGGAGGGGTGAGAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATAGTGATGGAGGAAGAGGGAGAAGAGGAGGAGGGGTGAGAGGG  521

seq1  ACAGGACAAGACTGTCCTAGTTACTCTTGTCTTACAGTGAAGAGATACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAAGACTGTCCTAGTTACTCTTGTCTTACAGTGAAGAGATACCA  571

seq1  TAATGAAGGCAAATCTCATCAAAGAACACCATGTAATCAAATGTTTGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGGCAAATCTCATCAAAGAACACCATGTAATCAAATGTTTGCTT  621

seq1  GCCATTTCAGAGGATTCGTCCATAGTCATTGTGATAAGAAGCAGACAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCAGAGGATTCGTCCATAGTCATTGTGATAAGAAGCAGACAGGT  671

seq1  ACGGCGAGAAAGCCAGGATAAACAGGTATAAATTACTTTGCAAATTATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGAGAAAGCCAGGATAAACAGGTATAAATTACTTTGCAAATTATAC  721

seq1  CTTAAATATAAAGCACAATATAAACTTTTTCAGAAAATTTTATCCTAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATAAAGCACAATATAAACTTTTTCAGAAAATTTTATCCTAAGG  771

seq1  AGTCATATGATTAAATATACAGAAGGAAAATATAAATCTGAATCACATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATGATTAAATATACAGAAGGAAAATATAAATCTGAATCACATTT  821

seq1  TAGAATATGATTTTTAAAAGTTGAAATTAAATAGTAAAGAAGTGAGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATGATTTTTAAAAGTTGAAATTAAATAGTAAAGAAGTGAGTGGA  871

seq1  ATTTGGGGAACAAAAACACAGTTTTTGTTTCCAGTCTTAATACCAATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGAACAAAAACACAGTTTTTGTTTCCAGTCTTAATACCAATGTT  921

seq1  TAGTTGGCCTTGGGTAAAGTAAAGAAAAAAAAAAAAAGCTTTGCTCAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGCCTTGGGTAAAGTAAAGAAAAAAAAAAAAAGCTTTGCTCAAGT  971

seq1  CCAACTGAACTGATTTCATGTCTTCTTTTTCAAATTTCAGTTAATCTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGAACTGATTTCATGTCTTCTTTTTCAAATTTCAGTTAATCTTGG  1021

seq1  TTTAAACCAAAGACGCAGTGTTTGTGCACATGAGTCTTTAATTTGTTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCAAAGACGCAGTGTTTGTGCACATGAGTCTTTAATTTGTTTTG  1071

seq1  TAGAGTTTTTCATGAATTAGCAGCTGTGACGCTGAAATAAGGAGAAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTTTCATGAATTAGCAGCTGTGACGCTGAAATAAGGAGAAGAAT  1121

seq1  TC  1151
      ||
seq2  TC  1123