BAC Information

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BAC

Clone NameB6Ng01-016L04
Chromosome3 (Build37)
Map Location 123,125,477 - 123,257,483
singlet/doubletdoublet
Overlap genePrss12, EG668804, Ndst3
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L04.bB6Ng01-016L04.g
ACCDH850589DH850590
length1,1231,042
definitionDH850589|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L04, 5' end.DH850590|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,256,359 - 123,257,483)(123,125,477 - 123,126,526)
sequence
gaattcttaggcttttcagaagcctgtggcttgagggagctgcattcata
tataatccctaaaattaagtcactgtaatatgcttgctgattctttgtct
gtcctaaatacttaatctccaagagtgatcttacctggtgaaacttcagg
tcctgttctggaaatgtggagcagaatctcttacatttattagtttgcaa
atcaaatatctctcaagttatctgcattctccaactcctagagaatatga
aaatatggtcaaacaagagcccattttctgtgcgagtctctgagactaga
gaaaatcagcagcatagatctaatatcccagaggactgtaagggcttttc
aaagcctgaactgttacacgtataaaagacagatgggaaagtgggtgtct
ttcgctgttaaaagctatctaatatcagcacctctgtcctttttattcat
tactttttggacggtttttcagaagcaggtttgagataagcttgtagcca
acagacactcatgataacccagcctctcgaagcagtaaaagtttcaaaat
aaggccaaagtatggcactgctggaaatagaatataagccacaagagata
gcgcatccaacaaccctccaatgttttcatctcgtttcctgcaaaaggga
gccaaatgacctgtgcaacaggtccagtccctggaacacacagcaagatt
atgttgctctaggtgtctagatgtctctgttagctttgctttgtcataac
aactgaagtcctaacaggaaccctagttaatagacaatgccacgtgggct
tcctatacactgaagtcaacatgggaatgttggtgacttgtgctcaggaa
ttactgaactctgctcaacctaagatgtggtgtggcccatgagttgaaga
caggagggagcagggtgaggccattattataaaatgtaactcttagaaat
taaatcgcggggctgtgagatggctcagtggttaagagcacccgactgct
cttcgaaggtccgaagttcaatcccagcaccacatggtggctacacactg
tatgagatctgatgccctcttctggtggcgtctgagacagctacgtgtac
tatacataaattaaaaaataaat
gaattcatgtagggtccgtccccactgaatggctagtacatacactgagg
cttactctgtacaacccgttctgcttatataatgaaaggggtgagcagag
ggagtttgctagacatatttttcatctgctggggccttaattattcagtg
gttggttggctgtttagattatacaagctttcacttctgctctcttgccc
tactgctgactgtttcgttgtcacacaaatcattaacacatctgccaggg
gtactttggggacagaatgcagcagccgatctcagtgtccattatttccg
ctatttcttaccatgctcatgagaatcctgaatggcagggaagattgcag
tgctcaagtgtaaatcaactgtggaggatgctagcatccctatcacccag
gccctctcttgctcttcaaggacaagggaaacttgtcttcacattgcttt
aaaacaataaagagagtcacatgcatttaagaatgtattagatgctgctg
tattatcctgcaaagaaaaataatcctaccaattacttatcctataaagg
tttgtaaggttttctcccttttaaattttcctaagccttgatttctttgt
ttttctcaagaggataaggtaattttttttttctgtaactgctaatctgt
tgggtaatttatctttcagcttacttccatgaacacacagcatttccaat
ccaatatacaataaaacttactgtggggaatttctgggggaaagctgtat
gaaaaataattaaacaggaaaacctttgagatccattttatatcaaaatt
ttctttcagagtttgaaaaatcaagtaaagttggttcttttgtttgtttt
gttttgttttgtgtgttttgtttggttttgaactacctcactcatctaga
caaatgtccttaggtgtttattgctgtgaacaaaccaccattaagctcaa
gcaactgtgagagaaaggggtcgttgcatctttacagttacagagcatca
tctgaaaagtctgacaggaattaagggcaggagctggagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123256359_123257483
seq2: B6Ng01-016L04.b_46_1168 (reverse)

seq1  -------ATTTATTGTATGTA-AGTACACTGTAGCTGTCTTCAGACG-CA  41
              |||| | |||||| ||||||| ||||||||| ||||||| ||
seq2  ATTTATTTTTTAATTTATGTATAGTACAC-GTAGCTGTC-TCAGACGCCA  48

seq1  CCAGAAGAGGGCATCAGATCTCATTACAGGTGGTTGTAAGCCACCATGTG  91
      ||||||||||||||||||||||| |||| |||  ||| ||||||||||||
seq2  CCAGAAGAGGGCATCAGATCTCA-TACA-GTG--TGT-AGCCACCATGTG  93

seq1  GTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTT  141
      | |||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  G-TGCTGGGA-TTGAACTTCGGACCTTC-GAAGAGCAGTCGGGTGCTCTT  140

seq1  AACCACTGAGCCATCTCACCAGCCCCGCGATTTAATTTCTAAGAGTTACA  191
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACCACTGAGCCATCTCA-CAGCCCCGCGATTTAATTTCTAAGAGTTACA  189

seq1  TTTTATAATAATGGCCTCACCCTGCTCCCTCCTGTCTTCAACTCATGGGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAATGGCCTCACCCTGCTCCCTCCTGTCTTCAACTCATGGGC  239

seq1  CACACCACATCTTAGGTTGAGCAGAGTTCAGTAATTCCTGAGCACAAGTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACATCTTAGGTTGAGCAGAGTTCAGTAATTCCTGAGCACAAGTC  289

seq1  ACCAACATTCCCATGTTGACTTCAGTGTATAGGAAGCCCACGTGGCATTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATTCCCATGTTGACTTCAGTGTATAGGAAGCCCACGTGGCATTG  339

seq1  TCTATTAACTAGGGTTCCTGTTAGGACTTCAGTTGTTATGACAAAGCAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAACTAGGGTTCCTGTTAGGACTTCAGTTGTTATGACAAAGCAAA  389

seq1  GCTAACAGAGACATCTAGACACCTAGAGCAACATAATCTTGCTGTGTGTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGAGACATCTAGACACCTAGAGCAACATAATCTTGCTGTGTGTT  439

seq1  CCAGGGACTGGACCTGTTGCACAGGTCATTTGGCTCCCTTTTGCAGGAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTGGACCTGTTGCACAGGTCATTTGGCTCCCTTTTGCAGGAAA  489

seq1  CGAGATGAAAACATTGGAGGGTTGTTGGATGCGCTATCTCTTGTGGCTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGAAAACATTGGAGGGTTGTTGGATGCGCTATCTCTTGTGGCTTA  539

seq1  TATTCTATTTCCAGCAGTGCCATACTTTGGCCTTATTTTGAAACTTTTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTTCCAGCAGTGCCATACTTTGGCCTTATTTTGAAACTTTTAC  589

seq1  TGCTTCGAGAGGCTGGGTTATCATGAGTGTCTGTTGGCTACAAGCTTATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGAGAGGCTGGGTTATCATGAGTGTCTGTTGGCTACAAGCTTATC  639

seq1  TCAAACCTGCTTCTGAAAAACCGTCCAAAAAGTAATGAATAAAAAGGACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTGCTTCTGAAAAACCGTCCAAAAAGTAATGAATAAAAAGGACA  689

seq1  GAGGTGCTGATATTAGATAGCTTTTAACAGCGAAAGACACCCACTTTCCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGATATTAGATAGCTTTTAACAGCGAAAGACACCCACTTTCCC  739

seq1  ATCTGTCTTTTATACGTGTAACAGTTCAGGCTTTGAAAAGCCCTTACAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTTTATACGTGTAACAGTTCAGGCTTTGAAAAGCCCTTACAGT  789

seq1  CCTCTGGGATATTAGATCTATGCTGCTGATTTTCTCTAGTCTCAGAGACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGATATTAGATCTATGCTGCTGATTTTCTCTAGTCTCAGAGACT  839

seq1  CGCACAGAAAATGGGCTCTTGTTTGACCATATTTTCATATTCTCTAGGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGAAAATGGGCTCTTGTTTGACCATATTTTCATATTCTCTAGGAG  889

seq1  TTGGAGAATGCAGATAACTTGAGAGATATTTGATTTGCAAACTAATAAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATGCAGATAACTTGAGAGATATTTGATTTGCAAACTAATAAAT  939

seq1  GTAAGAGATTCTGCTCCACATTTCCAGAACAGGACCTGAAGTTTCACCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGATTCTGCTCCACATTTCCAGAACAGGACCTGAAGTTTCACCAG  989

seq1  GTAAGATCACTCTTGGAGATTAAGTATTTAGGACAGACAAAGAATCAGCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCACTCTTGGAGATTAAGTATTTAGGACAGACAAAGAATCAGCA  1039

seq1  AGCATATTACAGTGACTTAATTTTAGGGATTATATATGAATGCAGCTCCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTACAGTGACTTAATTTTAGGGATTATATATGAATGCAGCTCCC  1089

seq1  TCAAGCCACAGGCTTCTGAAAAGCCTAAGAATTC  1125
      ||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACAGGCTTCTGAAAAGCCTAAGAATTC  1123

seq1: chr3_123125477_123126526
seq2: B6Ng01-016L04.g_65_1106

seq1  GAATTCATGTAGGGTCCGTCCCCACTGAATGGCTAGTACATACACTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGGGTCCGTCCCCACTGAATGGCTAGTACATACACTGAGG  50

seq1  CTTACTCTGTACAACCCGTTCTGCTTATATAATGAAAGGGGTGAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGTACAACCCGTTCTGCTTATATAATGAAAGGGGTGAGCAGAG  100

seq1  GGAGTTTGCTAGACATATTTTTCATCTGCTGGGGCCTTAATTATTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGCTAGACATATTTTTCATCTGCTGGGGCCTTAATTATTCAGTG  150

seq1  GTTGGTTGGCTGTTTAGATTATACAAGCTTTCACTTCTGCTCTCTTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGCTGTTTAGATTATACAAGCTTTCACTTCTGCTCTCTTGCCC  200

seq1  TACTGCTGACTGTTTCGTTGTCACACAAATCATTAACACATCTGCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGACTGTTTCGTTGTCACACAAATCATTAACACATCTGCCAGGG  250

seq1  GTACTTTGGGGACAGAATGCAGCAGCCGATCTCAGTGTCCATTATTTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTGGGGACAGAATGCAGCAGCCGATCTCAGTGTCCATTATTTCCG  300

seq1  CTATTTCTTACCATGCTCATGAGAATCCTGAATGGCAGGGAAGATTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTACCATGCTCATGAGAATCCTGAATGGCAGGGAAGATTGCAG  350

seq1  TGCTCAAGTGTAAATCAACTGTGGAGGATGCTAGCATCCCTATCACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGTGTAAATCAACTGTGGAGGATGCTAGCATCCCTATCACCCAG  400

seq1  GCCCTCTCTTGCTCTTCAAGGACAAGGGAAACTTGTCTTCACATTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTTGCTCTTCAAGGACAAGGGAAACTTGTCTTCACATTGCTTT  450

seq1  AAAACAATAAAGAGAGTCACATGCATTTAAGAATGTATTAGATGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAAAGAGAGTCACATGCATTTAAGAATGTATTAGATGCTGCTG  500

seq1  TATTATCCTGCAAAGAAAAATAATCCTACCAATTACTTATCCTATAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTGCAAAGAAAAATAATCCTACCAATTACTTATCCTATAAAGG  550

seq1  TTTGTAAGGTTTTCTCCCTTTTAAATTTTCCTAAGCCTTGATTTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTTCTCCCTTTTAAATTTTCCTAAGCCTTGATTTCTTTGT  600

seq1  TTTTCTCAAGAGGATAAGGTAATTTTTTTTTTCTGTAACTGCTAATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAGAGGATAAGGTAATTTTTTTTTTCTGTAACTGCTAATCTGT  650

seq1  TGGGTAATTTATCTTTCAGCTTACTTCCATGAACACACAGCATTTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATTTATCTTTCAGCTTACTTCCATGAACACACAGCATTTCCAAT  700

seq1  CCAATATACAATAAAACTTACTGTGGGGAATTTCTGGGGGAAAGCTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATACAATAAAACTTACTGTGGGGAATTTCTGGGGGAAAGCTGTAT  750

seq1  GAAAAATAATTAAACAGGAAAACCTTTGAGATCCATTTTATATCAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATTAAACAGGAAAACCTTTGAGATCCATTTTATATCAAAATT  800

seq1  TTCTTTCAGAGTTTGAAAAATCAAGTAAAGTTGGTTCTTTTGTTTTGTTT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTTTCAGAGTTTGAAAAATCAAGTAAAGTTGGTTCTTTTG-TTTGTTT  849

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTACTACCTCACTCATT  900
      |||||||||||| | |||||||||| |  ||||| ||||||||||||| |
seq2  TGTTTTGTTTTG-TGTGTTTTGTTTGG--TTTTGAACTACCTCACTCA-T  895

seq1  CTAGACAAAATGTCTTAGGGTGTTTATTGCTGTG-ACAAAACACCATTAA  949
      |||||| ||||||| |  |||||||||||||||| ||||| |||||||||
seq2  CTAGAC-AAATGTCCTTAGGTGTTTATTGCTGTGAACAAACCACCATTAA  944

seq1  GCCAAAGCAACTTGGAGAGGAAAGGGTTCGTTGCATC-TTACAGTTTACA  998
      ||  ||||||||  |||| ||||||| |||||||||| |||||| |||||
seq2  GCTCAAGCAACTGTGAGA-GAAAGGGGTCGTTGCATCTTTACAG-TTACA  992

seq1  GAGCATCATCTGAAAAAGTCAGGACAGGAATTAAAGGCAGGAGCTGAAGT  1048
      |||||||||||| |||||||  |||||||||||| ||||||||||| |||
seq2  GAGCATCATCTG-AAAAGTC-TGACAGGAATTAAGGGCAGGAGCTGGAGT  1040

seq1  AG  1050
      ||
seq2  AG  1042