BAC Information

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BAC

Clone NameB6Ng01-016M12
Chromosome3 (Build37)
Map Location 83,407,792 - 83,535,863
singlet/doubletdoublet
Overlap geneLOC100042091
Upstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
Downstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M12.bB6Ng01-016M12.g
ACCDH850646DH850647
length909660
definitionDH850646|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M12, 5' end.DH850647|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,534,954 - 83,535,863)(83,407,792 - 83,408,451)
sequence
gaattcatggggtatctgtaaatgagagacttagaccagttaccccagca
gtaacggaaagtccataatcccaagttaatgtgtgccatttgcttctgta
aataacagctctgtagaagtagggcagtgcctttcccctgttcacaagtc
ataatttatttctgttgttttcggtttaaagtaaaaagtacattgaggca
aagacaaaagcaaatagtgcaaagtacggaggatttaggacaaaaagcat
ttagaacaaaaacctatgagccgactggcgtgctgatgtggctggccttc
ggaagctctggggagatttgttcactgactttagagtagttttttgtgtc
cattttctctgttctttcctatgggaaacccagctttcttctaatgtttg
cgccccttctccttgctgctgaattttttttccttctcagaagacaactg
ttactaccagaataacagatccaagctttctatctacaaaggacagtggt
ttcagtgtcctaagccccgttgcccaccccctttctcttccttggtgtca
tttggatggttttccccaccaccctctcagcttcatcctgtaccgctggg
gctgctgttctctgtcctggtcatccaattgcctctttcttctcttgatt
taaaatgtgtctgagttcatgtctgtgtggacatctttactttccacaag
actttatagtgggtcagacactgtaagtgagcctgtgctggagtaagagg
agtccccagaatctcaggggccccacacaccaagggcgtgtctgcctcac
acgaagtccggcctgatagttttgctttagggggtccttgtggtggtgtt
gggtccttcaactctaggcaggagaaggaaggaagagaggacggggtggg
ggaagaatg
gaattcactccaaagggcttttattgtgcatcttttctgtggcacattct
tttaaaaacgcctggagtacaatgaagaaccaaacagacaaagtagccgg
ctttgtggtttacatttatacatctaagcgttaattgtagtggaaaggac
cacacaacattgatatgaacaaaccaaacactattcacagagtgagtcct
cagcactaactgttcctaggcaatactgaagggcgagggttggagagatt
ccctgacaggcagacagatctggagaggagccatgactagataataaaga
ttatgggtttctaagatggctggcttcttcatcttcctgacttaagacaa
aggcctgctggagttcaaggccagaccttgaacttgcttattgtgtatca
gttggcctttctgcctttgtcaaattgacgaagcctaagctgggagaaaa
caacccctcaaagactcaaccccctcaaagactcgatcctctcaaagact
cttaaagccctggtccttgaggaaagattgggtcttggcttccagatccc
ttcattgtgtttgcagagagtcttttactctgtgtgcctctctctttctc
tgtctctctctctctctctctctctctcactctgcctctctctctctctc
tctgcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83534954_83535863
seq2: B6Ng01-016M12.b_42_950 (reverse)

seq1  CCTTCTTCCCCCACCCCGTCCTCTCTTCCTTCCTTCCTCCTGCCTAGAGT  50
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTCTTCCCCCACCCCGTCCTCTCTTCCTTCCTT-CTCCTGCCTAGAGT  49

seq1  TGAAGGACCCAACACCACCACAAGGACCCCCTAAAGCAAAACTATCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACCCAACACCACCACAAGGACCCCCTAAAGCAAAACTATCAGGC  99

seq1  CGGACTTCGTGTGAGGCAGACACGCCCTTGGTGTGTGGGGCCCCTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTTCGTGTGAGGCAGACACGCCCTTGGTGTGTGGGGCCCCTGAGAT  149

seq1  TCTGGGGACTCCTCTTACTCCAGCACAGGCTCACTTACAGTGTCTGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACTCCTCTTACTCCAGCACAGGCTCACTTACAGTGTCTGACCC  199

seq1  ACTATAAAGTCTTGTGGAAAGTAAAGATGTCCACACAGACATGAACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAGTCTTGTGGAAAGTAAAGATGTCCACACAGACATGAACTCAG  249

seq1  ACACATTTTAAATCAAGAGAAGAAAGAGGCAATTGGATGACCAGGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTAAATCAAGAGAAGAAAGAGGCAATTGGATGACCAGGACAGA  299

seq1  GAACAGCAGCCCCAGCGGTACAGGATGAAGCTGAGAGGGTGGTGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGCCCCAGCGGTACAGGATGAAGCTGAGAGGGTGGTGGGGAAA  349

seq1  ACCATCCAAATGACACCAAGGAAGAGAAAGGGGGTGGGCAACGGGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCAAATGACACCAAGGAAGAGAAAGGGGGTGGGCAACGGGGCTTA  399

seq1  GGACACTGAAACCACTGTCCTTTGTAGATAGAAAGCTTGGATCTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGAAACCACTGTCCTTTGTAGATAGAAAGCTTGGATCTGTTATT  449

seq1  CTGGTAGTAACAGTTGTCTTCTGAGAAGGAAAAAAAATTCAGCAGCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTAACAGTTGTCTTCTGAGAAGGAAAAAAAATTCAGCAGCAAGG  499

seq1  AGAAGGGGCGCAAACATTAGAAGAAAGCTGGGTTTCCCATAGGAAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCGCAAACATTAGAAGAAAGCTGGGTTTCCCATAGGAAAGAAC  549

seq1  AGAGAAAATGGACACAAAAAACTACTCTAAAGTCAGTGAACAAATCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGGACACAAAAAACTACTCTAAAGTCAGTGAACAAATCTCCC  599

seq1  CAGAGCTTCCGAAGGCCAGCCACATCAGCACGCCAGTCGGCTCATAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCCGAAGGCCAGCCACATCAGCACGCCAGTCGGCTCATAGGTT  649

seq1  TTTGTTCTAAATGCTTTTTGTCCTAAATCCTCCGTACTTTGCACTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAAATGCTTTTTGTCCTAAATCCTCCGTACTTTGCACTATTTG  699

seq1  CTTTTGTCTTTGCCTCAATGTACTTTTTACTTTAAACCGAAAACAACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTTTGCCTCAATGTACTTTTTACTTTAAACCGAAAACAACAGA  749

seq1  AATAAATTATGACTTGTGAACAGGGGAAAGGCACTGCCCTACTTCTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATGACTTGTGAACAGGGGAAAGGCACTGCCCTACTTCTACAG  799

seq1  AGCTGTTATTTACAGAAGCAAATGGCACACATTAACTTGGGATTATGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTATTTACAGAAGCAAATGGCACACATTAACTTGGGATTATGGAC  849

seq1  TTTCCGTTACTGCTGGGGTAACTGGTCTAAGTCTCTCATTTACAGATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTACTGCTGGGGTAACTGGTCTAAGTCTCTCATTTACAGATACC  899

seq1  CCATGAATTC  910
      ||||||||||
seq2  CCATGAATTC  909

seq1: chr3_83407792_83408451
seq2: B6Ng01-016M12.g_66_725

seq1  GAATTCACTCCAAAGGGCTTTTATTGTGCATCTTTTCTGTGGCACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAAAGGGCTTTTATTGTGCATCTTTTCTGTGGCACATTCT  50

seq1  TTTAAAAACGCCTGGAGTACAATGAAGAACCAAACAGACAAAGTAGCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACGCCTGGAGTACAATGAAGAACCAAACAGACAAAGTAGCCGG  100

seq1  CTTTGTGGTTTACATTTATACATCTAAGCGTTAATTGTAGTGGAAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTTTACATTTATACATCTAAGCGTTAATTGTAGTGGAAAGGAC  150

seq1  CACACAACATTGATATGAACAAACCAAACACTATTCACAGAGTGAGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACATTGATATGAACAAACCAAACACTATTCACAGAGTGAGTCCT  200

seq1  CAGCACTAACTGTTCCTAGGCAATACTGAAGGGCGAGGGTTGGAGAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAACTGTTCCTAGGCAATACTGAAGGGCGAGGGTTGGAGAGATT  250

seq1  CCCTGACAGGCAGACAGATCTGGAGAGGAGCCATGACTAGATAATAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAGGCAGACAGATCTGGAGAGGAGCCATGACTAGATAATAAAGA  300

seq1  TTATGGGTTTCTAAGATGGCTGGCTTCTTCATCTTCCTGACTTAAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTTTCTAAGATGGCTGGCTTCTTCATCTTCCTGACTTAAGACAA  350

seq1  AGGCCTGCTGGAGTTCAAGGCCAGACCTTGAACTTGCTTATTGTGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCTGGAGTTCAAGGCCAGACCTTGAACTTGCTTATTGTGTATCA  400

seq1  GTTGGCCTTTCTGCCTTTGTCAAATTGACGAAGCCTAAGCTGGGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTTTCTGCCTTTGTCAAATTGACGAAGCCTAAGCTGGGAGAAAA  450

seq1  CAACCCCTCAAAGACTCAACCCCCTCAAAGACTCGATCCTCTCAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCAAAGACTCAACCCCCTCAAAGACTCGATCCTCTCAAAGACT  500

seq1  CTTAAAGCCCTGGTCCTTGAGGAAAGATTGGGTCTTGGCTTCCAGATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCCTGGTCCTTGAGGAAAGATTGGGTCTTGGCTTCCAGATCCC  550

seq1  TTCATTGTGTTTGCAGAGAGTCTTTTACTCTGTGTGCCTCTCTCTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTGTTTGCAGAGAGTCTTTTACTCTGTGTGCCTCTCTCTTTCTC  600

seq1  TGTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTGCCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTGCCTCTCTCTCTCTCTC  650

seq1  TCTGCCTCTC  660
      ||||||||||
seq2  TCTGCCTCTC  660