BAC Information

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BAC

Clone NameB6Ng01-017N16
Chromosome3 (Build37)
Map Location 58,102,873 - 58,330,079
singlet/doubletdoublet
Overlap geneTsc22d2, D3Ucla1, Eif2a
Upstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream gene2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N16.bB6Ng01-017N16.g
ACCDH851411DH851412
length1,032819
definitionDH851411|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N16, 5' end.DH851412|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,102,873 - 58,103,892)(58,329,260 - 58,330,079)
sequence
gaattcttaactaatacagtagagataggctgaaattgggcacaatccat
ctccaacatgaacattcagaaatccagtttcaaagctgttcaccagggga
ttaaagtctggaatggagttttgagtcccactctcatgtatatcctctag
ggggtgaccatttgggagaacataagaagccagagctccctctggcattc
ctggcaagagaaccaagggcatttcttcaagtattgcttttgcagccctg
tccttaaactgcctagccagttcttatctcctgtcatcacagaatcactg
tggaattccatcaggtcttacaatctatggaagctgaagtctgaatgtta
agatacacacccatccgatgttttttttgttttgttttgttttgttggga
tagggtctcaagtagtccaagctaaccttaaactccctatataatcttga
tcttcctgccaccatctcagaagtgctaggattatagacatacaatggat
aacatgtgtcttagatagggtttctatgcctctgataaaatctcatggcc
aaaagcaacttgggaagcaaagggtttatttggcttacacttccaggtaa
caatccatcactgaaggaagtcaggacaggaactcaaacagggcaggaaa
ctggaggcaagaactgatgcaggagccatggaggaatgctgcttaggatt
tctccccaggactttcttagcttgcttgttttatacatcccagggacacc
tgccattcacaatgggttaggctcacaaagacccaactcaatcactaatt
ggaaaatacaaaacagtcttgcctatgggtaaatcctgtggatgcatttt
ttcgataagagttcctcttcccaaataactgtagcttgtctcaaattgac
ataataccatctgggacagcatgctacctccatgttggctcatgaaacaa
gagattagccaaatgtagatagagctctggaccgtttccagagactcttg
cccagcagtagaactatatgatttgggttgtg
gaattctccagcgcgaagacacagaaagaaatcaccgtaaaggaagagtc
tctcgctcttttggaactcacctgtcaacagcggtgtggacggcgccatc
ttgtcccggaaagagaaacccacgcgctggggtgagagttcaagaaaggc
cgaacccggcctctacacgtctccccaagcgcaaagtctgcgagtcggtg
tttccggcgccgccagcctcggggccaatccacgtctggttcccgagcgc
gcacgcgcagctctggctcctcgttttccggagcggggaagagcctggct
gcggtggcggccggcgctcgccctccctctccggagcgggcggagtccac
acttccgcggggcggggtctgcccagtgctgacgttggcagccgaacccg
aactagttcgaggttgccggttgcactgtccggtggttggactcttgcct
ctcggccctgcggcccgctctccccggcacgccgccccaaaggctgctca
gaccgccgcgatcggcggctgccggtgttccagcgctccgcgtcccggcc
cagtggctgtagacggcgtaggcaccgcgatcagagccgagcctccctcc
cggtggcccgggaccggcgagcgagcgagtccgagaggtcttggggcagg
tggcgctgcgaaaatggtcgccaagcagaggatccttatggccaacgaga
agcacagcaagaacataactcagcgcggcaacgtcgctaaacctcggtaa
gggaaagtggggcccccgctccatgtcgtggccgggaagccgaggcccgc
gcctcgcgcccggccgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58102873_58103892
seq2: B6Ng01-017N16.b_48_1062

seq1  GAATTCTTAACTAATACAGTAGAGATAGGCTGAAATTGGGCACAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTAATACAGTAGAGATAGGCTGAAATTGGGCACAATCCAT  50

seq1  CTCCAACATGAACATTCAGAAATCCAGTTTCAAAGCTGTTCACCAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATGAACATTCAGAAATCCAGTTTCAAAGCTGTTCACCAGGGGA  100

seq1  TTAAAGTCTGGAATGGAGTTTTGAGTCCCACTCTCATGTATATCCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCTGGAATGGAGTTTTGAGTCCCACTCTCATGTATATCCTCTAG  150

seq1  GGGGTGACCATTTGGGAGAACATAAGAAGCCAGAGCTCCCTCTGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACCATTTGGGAGAACATAAGAAGCCAGAGCTCCCTCTGGCATTC  200

seq1  CTGGCAAGAGAACCAAGGGCATTTCTTCAAGTATTGCTTTTGCAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGAGAACCAAGGGCATTTCTTCAAGTATTGCTTTTGCAGCCCTG  250

seq1  TCCTTAAACTGCCTAGCCAGTTCTTATCTCCTGTCATCACAGAATCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACTGCCTAGCCAGTTCTTATCTCCTGTCATCACAGAATCACTG  300

seq1  TGGAATTCCATCAGGTCTTACAATCTATGGAAGCTGAAGTCTGAATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCATCAGGTCTTACAATCTATGGAAGCTGAAGTCTGAATGTTA  350

seq1  AGATACACACCCATCCGATGTTTTTTTTGTTTTGTTTTGTTTTGTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACCCATCCGATGTTTTTTTTGTTTTGTTTTGTTTTGTTGGGA  400

seq1  TAGGGTCTCAAGTAGTCCAAGCTAACCTTAAACTCCCTATATAATCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTCAAGTAGTCCAAGCTAACCTTAAACTCCCTATATAATCTTGA  450

seq1  TCTTCCTGCCACCATCTCAGAAGTGCTAGGATTATAGACATACAATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGCCACCATCTCAGAAGTGCTAGGATTATAGACATACAATGGAT  500

seq1  AACATGTGTCTTAGATAGGGTTTCTATGCCTCTGATAAAATCTCATGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTCTTAGATAGGGTTTCTATGCCTCTGATAAAATCTCATGGCC  550

seq1  AAAAGCAACTTGGGAAGCAAAGGGTTTATTTGGCTTACACTTCCAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTTGGGAAGCAAAGGGTTTATTTGGCTTACACTTCCAGGTAA  600

seq1  CAATCCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGGGCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGGGCAGGAAA  650

seq1  CTGGAGGCAAGAACTGATGCAGGAGCCATGGAGGAATGCTGCTTAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCAAGAACTGATGCAGGAGCCATGGAGGAATGCTGCTTAGGATT  700

seq1  TCTCCCCAGGACTTTCTTAGCTTGCTTGTTTTATACATCCCAGGGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGGACTTTCTTAGCTTGCTTGTTTTATACATCCCAGGGACACC  750

seq1  TGCCATTCACAATGGGTTAGGCTCACAAAGACCCAACTCAATCACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCACAATGGGTTAGGCTCACAAAGACCCAACTCAATCACTAATT  800

seq1  GGAAAATACAAAACAGTCTTGCCTATGGGTAAATCCTGTGGATGCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACAAAACAGTCTTGCCTATGGGTAAATCCTGTGGATGCATTTT  850

seq1  TTCGATTAAGAGTTCCTCTTCCCAAATAACTGTAGCTTGTCTCAAATTGA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGA-TAAGAGTTCCTCTTCCCAAATAACTGTAGCTTGTCTCAAATTGA  899

seq1  CATAATACCATCTGGGACAGCATGCTACCTCCATGTTGGCTCATGAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATAATACCATCTGGGACAGCATGCTACCTCCATGTTGGCTCATG-AAAC  948

seq1  AAGAGAATAGCCAAAATGTAGATAGAGCTCTGGACCGTTTTCCAGAAGAC  1000
      |||||| ||||| |||||||||||||||||||||||| ||||||| ||||
seq2  AAGAGATTAGCC-AAATGTAGATAGAGCTCTGGACCG-TTTCCAG-AGAC  995

seq1  TC-TGCCCAGCAGTAAGAACT  1020
      || ||||||||||| ||||||
seq2  TCTTGCCCAGCAGT-AGAACT  1015

seq1: chr3_58329260_58330079
seq2: B6Ng01-017N16.g_64_882 (reverse)

seq1  CCCCGGCCGGGCGCGGGGCGCGGGCCTCGGC-TCCCGGCCACGACATGGA  49
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CCCCGGCCGGGCGCGAGGCGCGGGCCTCGGCTTCCCGGCCACGACATGGA  50

seq1  GCGGGGTGCCCACTTTCCCTTACCGAGGTCTTAGCGACGTTGCCGCGCTG  99
      ||||||  ||||||||||||||||||||| ||||||||||||||||||||
seq2  GCGGGGGCCCCACTTTCCCTTACCGAGGT-TTAGCGACGTTGCCGCGCTG  99

seq1  AGTTATGTTCTTGCTGTGCTTCTCGTTGGCCATACGGATCCTCTGCTTGG  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTATGTTCTTGCTGTGCTTCTCGTTGGCCATAAGGATCCTCTGCTTGG  149

seq1  CGACCATTTTCGCAGCGCCACCTGCCCCAAGAACCTCTCGGACTCGCTCG  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGACCATTTTCGCAGCGCCACCTGCCCCAAG-ACCTCTCGGACTCGCTCG  198

seq1  CTCGCCGGTCCCGGGCCACCGGGAGGGAGGCTCGGCTCTGATCGCGGTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCGGTCCCGGGCCACCGGGAGGGAGGCTCGGCTCTGATCGCGGTGC  248

seq1  CTACGCCGTCTACAGCCACTGGGCCGGGACGCGGAGCGCTGGAACACCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCCGTCTACAGCCACTGGGCCGGGACGCGGAGCGCTGGAACACCGG  298

seq1  CAGCCGCCGATCGCGGCGGTCTGAGCAGCCTTTGGGGCGGCGTGCCGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCCGATCGCGGCGGTCTGAGCAGCCTTTGGGGCGGCGTGCCGGGG  348

seq1  AGAGCGGGCCGCAGGGCCGAGAGGCAAGAGTCCAACCACCGGACAGTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGGGCCGCAGGGCCGAGAGGCAAGAGTCCAACCACCGGACAGTGCA  398

seq1  ACCGGCAACCTCGAACTAGTTCGGGTTCGGCTGCCAACGTCAGCACTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCAACCTCGAACTAGTTCGGGTTCGGCTGCCAACGTCAGCACTGGG  448

seq1  CAGACCCCGCCCCGCGGAAGTGTGGACTCCGCCCGCTCCGGAGAGGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCGCCCCGCGGAAGTGTGGACTCCGCCCGCTCCGGAGAGGGAGG  498

seq1  GCGAGCGCCGGCCGCCACCGCAGCCAGGCTCTTCCCCGCTCCGGAAAACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCGCCGGCCGCCACCGCAGCCAGGCTCTTCCCCGCTCCGGAAAACG  548

seq1  AGGAGCCAGAGCTGCGCGTGCGCGCTCGGGAACCAGACGTGGATTGGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGAGCTGCGCGTGCGCGCTCGGGAACCAGACGTGGATTGGCCC  598

seq1  CGAGGCTGGCGGCGCCGGAAACACCGACTCGCAGACTTTGCGCTTGGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTGGCGGCGCCGGAAACACCGACTCGCAGACTTTGCGCTTGGGGA  648

seq1  GACGTGTAGAGGCCGGGTTCGGCCTTTCTTGAACTCTCACCCCAGCGCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTAGAGGCCGGGTTCGGCCTTTCTTGAACTCTCACCCCAGCGCGT  698

seq1  GGGTTTCTCTTTCCGGGACAAGATGGCGCCGTCCACACCGCTGTTGACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTTTCCGGGACAAGATGGCGCCGTCCACACCGCTGTTGACAG  748

seq1  GTGAGTTCCAAAAGAGCGAGAGACTCTTCCTTTACGGTGATTTCTTTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAAAAGAGCGAGAGACTCTTCCTTTACGGTGATTTCTTTCTG  798

seq1  TGTCTTCGCGCTGGAGAATTC  820
      |||||||||||||||||||||
seq2  TGTCTTCGCGCTGGAGAATTC  819