BAC Information

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BAC

Clone NameB6Ng01-019B05
ChromosomeX (Build37)3 (Build37)
Map Location 157,306,100 - 157,306,16487,624,359 - 87,624,788
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1
Downstream geneGja6, Scml2, LOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019B05.bB6Ng01-019B05.g
ACCDH852275DH852276
length744424
definitionDH852275|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B05, 5' end.DH852276|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(157,306,100 - 157,306,164)(87,624,359 - 87,624,788)
sequence
gaattctacatcatgcctgtctggatgctgccttgctcctgccttgatga
taatagactgaacctctgaacctgtaagctagccccaattaaatgttgtc
ataagagttgccttggttatggtatctgtttacttagtaaaaccctaact
aagacacccaagcagtgtcagttatgggtttcatctgatggaatggacct
taagttaaaacaaacgttggttacacccgcaggttctctgccaccattgc
cctagcacatcttgaaggcagggcagattgtaggtcaaaagttttttagc
taggctgctgtttatgtttatttttttggtagcctgcagagtaccttccc
ataccaaagacactagaatgtaggggagaaggctcatgtaggcagcagct
cgacttatccacgtttaatgagttgtgtaggtgttgtcttcagcaatggg
gccctgctgtccatttgcagagaataacccagcctaggttgtttggggat
ttccatgagacccccttggccaacaactcaattgaatgcagcctaatcct
ggtactgggagccttgtttagtgacaagagatggccaagtaggactccaa
ttcccccattattaggagacctcataggatatacttaatacactttagtt
tttactctactaggttttccatatcatccctcagatgcccctcaattcca
gcgcttgctctctctctctctctctctctctctctctctctcta
attgagcactgaatatgcacctatatgcactggttgagagtgataaaaga
tgcaggagacacatgagggcagaggtgtgtacacaggttaataaatacag
atgtttcagggtgacagctgagctagaagcatgggtgaaagtcaaagcat
ccaaggagtggtcctctgtccagggacgaagttactagaggggtggaagt
caagccacctgtcctcacagcttcctgccgacagccaatagtcaggatga
cagggtgggataagtgtcaacagactaccttttcttttcttttcttttct
tttcttttcttttcttttcttttcttttcttttcttttcttttcttttct
cttctcttctcttctcttctcttctcttctcttctcttctcttctcttct
cttcttttctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157306100_157306164
seq2: B6Ng01-019B05.b_744_785 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGCACACACACACACATACATACGGAGAGA  50
      |||||||||||||||||||||                       ||||||
seq2  AGAGAGAGAGAGAGAGAGAGA-----------------------GAGAGA  27

seq1  GAGAGAGAGCAAGCG  65
      |||||||||||||||
seq2  GAGAGAGAGCAAGCG  42

seq1: chr3_87624359_87624788
seq2: B6Ng01-019B05.g_68_497 (reverse)

seq1  GGAGGAGGAGGAGGAGAAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGAAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA  50

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAA  100

seq1  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGTAG  150

seq1  TCTGTTGACACTTATCCCACCCTGTCATCCTGACTATTGGCTGTCGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGACACTTATCCCACCCTGTCATCCTGACTATTGGCTGTCGGCAG  200

seq1  GAAGCTGTGAGGACAGGTGGCTTGACTTCCACCCCTCTAGTAACTTCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGAGGACAGGTGGCTTGACTTCCACCCCTCTAGTAACTTCGTC  250

seq1  CCTGGACAGAGGACCACTCCTTGGATGCTTTGACTTTCACCCATGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAGAGGACCACTCCTTGGATGCTTTGACTTTCACCCATGCTTCT  300

seq1  AGCTCAGCTGTCACCCTGAAACATCTGTATTTATTAACCTGTGTACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTGTCACCCTGAAACATCTGTATTTATTAACCTGTGTACACAC  350

seq1  CTCTGCCCTCATGTGTCTCCTGCATCTTTTATCACTCTCAACCAGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTCATGTGTCTCCTGCATCTTTTATCACTCTCAACCAGTGCAT  400

seq1  ATAGGTGCATATTCAGTGCTCAATGAATTC  430
      ||||||||||||||||||||||||||||||
seq2  ATAGGTGCATATTCAGTGCTCAATGAATTC  430