BAC Information

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BAC

Clone NameB6Ng01-020A12
Chromosome3 (Build37)
Map Location 125,712,931 - 125,714,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668820, Ndst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A12.bB6Ng01-020A12.g
ACCDH852943DH852944
length8911,074
definitionDH852943|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A12, 5' end.DH852944|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
acattctgtcagtccgttaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccaag
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccatccattggctacagcccatgag
tcagtgaataatcgtacatctggccacttctcttacaaacaaactgtaat
accatgtgtactgcccgaagttctgcccactgtgaagatttcccttcacc
tgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgtcc
cttctgggtggtgctgcataacgtgcaaagtcatcataaat

gaattctgaccaactcctcagtaggaaaattacatgatcaaggtaagcct
gggttccagagtgagttcaaggccagcatgagcaacttagtgaaacgaaa
gagatgcagctcaatgagttccatggtagagcagctgctggtcccatgag
gctgagagacgtggctcagtgcactctaccatggggcaattgccaagcat
gtatgaggagcaaagttcaagctcagaacacatctaattaacagataagt
gaactgatttcagatacaaatgattgacttaaacattaaatacactactt
gtttgtaaaacttaggcccattatagaactctttgatgaattttaaaaag
cactgcagtaattagaattattgataatacatgtttcttttggaaactga
caatttgctcttgacacagtttttcaaaatttctctgttctccttttttc
actagaatgtattctaatatgctgtcctgttgttcacataaatttggcag
aatgcactatgcaagtcagtgcctacttgttacatcttagcaagtcaggt
ctgaaattacccctgttaactaattaaagttaaccagagataagcccaga
gcacttgataactcttactaaagagatattttatataattctatacagag
ttgccattgtgtatatggcaaaattaaaatgttgcatttctattacatga
agacatttaaagactagatgtttttaacaaaaagaaaaaactactttaaa
ggccccatttgcatccctaactttaactatgtagaaattatcattgctat
taatataagttatgatgggctatggagtctaggaatgtttaagaaaataa
gaagttagccagtatttcttcagacatttaccataattaaaaatactatc
ttcaacatggtataattagaggaaaagtttattctacagtgtgttgacta
atcttaatctaatgcagtcagtctcgaataaatgaaattatccctaaagt
ccttatgaatactgaaaacgcaaaggtgccaagccacactttgattctca
ttcctttcctatggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125712931_125714016
seq2: B6Ng01-020A12.g_67_1140

seq1  GAATTCTGACCAACTCCTCAGTAGGAAAATTACATGATCAAGGTAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCAACTCCTCAGTAGGAAAATTACATGATCAAGGTAAGCCT  50

seq1  GGGTTCCAGAGTGAGTTCAAGGCCAGCATGAGCAACTTAGTGAAACGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCAGAGTGAGTTCAAGGCCAGCATGAGCAACTTAGTGAAACGAAA  100

seq1  GAGATGCAGCTCAATGAGTTCCATGGTAGAGCAGCTGCTGGTCCCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGCTCAATGAGTTCCATGGTAGAGCAGCTGCTGGTCCCATGAG  150

seq1  GCTGAGAGACGTGGCTCAGTGCACTCTACCATGGGGCAATTGCCAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGACGTGGCTCAGTGCACTCTACCATGGGGCAATTGCCAAGCAT  200

seq1  GTATGAGGAGCAAAGTTCAAGCTCAGAACACATCTAATTAACAGATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGAGCAAAGTTCAAGCTCAGAACACATCTAATTAACAGATAAGT  250

seq1  GAACTGATTTCAGATACAAATGATTGACTTAAACATTAAATACACTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATTTCAGATACAAATGATTGACTTAAACATTAAATACACTACTT  300

seq1  GTTTGTAAAACTTAGGCCCATTATAGAACTCTTTGATGAATTTTAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAAACTTAGGCCCATTATAGAACTCTTTGATGAATTTTAAAAAG  350

seq1  CACTGCAGTAATTAGAATTATTGATAATACATGTTTCTTTTGGAAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGTAATTAGAATTATTGATAATACATGTTTCTTTTGGAAACTGA  400

seq1  CAATTTGCTCTTGACACAGTTTTTCAAAATTTCTCTGTTCTCCTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCTCTTGACACAGTTTTTCAAAATTTCTCTGTTCTCCTTTTTTC  450

seq1  ACTAGAATGTATTCTAATATGCTGTCCTGTTGTTCACATAAATTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGTATTCTAATATGCTGTCCTGTTGTTCACATAAATTTGGCAG  500

seq1  AATGCACTATGCAAGTCAGTGCCTACTTGTTACATCTTAGCAAGTCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTATGCAAGTCAGTGCCTACTTGTTACATCTTAGCAAGTCAGGT  550

seq1  CTGAAATTACCCCTGTTAACTAATTAAAGTTAACCAGAGATAAGCCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTACCCCTGTTAACTAATTAAAGTTAACCAGAGATAAGCCCAGA  600

seq1  GCACTTGATAACTCTTACTAAAGAGATATTTTATATAATTCTATACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGATAACTCTTACTAAAGAGATATTTTATATAATTCTATACAGAG  650

seq1  TTGCCATTGTGTATATGGCAAAATTAAAATGTTGCATTTCTATTACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTGTGTATATGGCAAAATTAAAATGTTGCATTTCTATTACATGA  700

seq1  AGACATTTAAAGACTAGATGTTTTTAACAAAAAG-AAAAACTACTTTAAA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACATTTAAAGACTAGATGTTTTTAACAAAAAGAAAAAACTACTTTAAA  750

seq1  GGCCCCATTTGCATCCCTAACTTTAACTATGTAGAAATTATCATTGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATTTGCATCCCTAACTTTAACTATGTAGAAATTATCATTGCTAT  800

seq1  TAATATAAGTTATGATGGGCTATGGAGTCTAGGAATGTTTTAAGAAAATA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAATATAAGTTATGATGGGCTATGGAGTCTAGGAATG-TTTAAGAAAATA  849

seq1  AGAAGTTAGCCAGTATTTCTTCAGAACATTTACCATAAATAAAAATACTA  899
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AGAAGTTAGCCAGTATTTCTTCAG-ACATTTACCATAATTAAAAATACTA  898

seq1  TCTTCAACATGGTATAATTAGAGGAAAAAGTATATTCTACAGTGTG-TGA  948
      |||||||||||||||||||||||| |||||| |||||||||||||| |||
seq2  TCTTCAACATGGTATAATTAGAGG-AAAAGTTTATTCTACAGTGTGTTGA  947

seq1  CTAATCTTAGTCTAAATGCAGTCAGTCTCTGAGTAAATGAAATTATTCCC  998
      ||||||||| ||| ||||||||||||||| || |||||||||||| ||||
seq2  CTAATCTTAATCT-AATGCAGTCAGTCTC-GAATAAATGAAATTA-TCCC  994

seq1  TAGAGTCCTTATTGTAATACCTGAAAAATGCAAATGTTGCCTAGCCTACA  1048
      || |||||||||   |||| ||| |||| ||||| | |||| |||| |||
seq2  TAAAGTCCTTAT--GAATA-CTG-AAAACGCAAA-GGTGCCAAGCC-ACA  1038

seq1  CTTTGATTCTCATTTCCTTTCCTATGTGTGTGTGTGTG  1086
      |||||||||||| ||||||||||||| |||||||||||
seq2  CTTTGATTCTCA-TTCCTTTCCTATG-GTGTGTGTGTG  1074


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