BAC Information

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BAC

Clone NameB6Ng01-020H23
Chromosome3 (Build37)
Map Location 36,965,714 - 37,055,820
singlet/doubletdoublet
Overlap geneTenr, LOC652987, Il2
Upstream geneAcad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik
Downstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020H23.bB6Ng01-020H23.g
ACCDH853277DH853278
length1,076964
definitionDH853277|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H23, 5' end.DH853278|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,965,714 - 36,966,802)(37,054,852 - 37,055,820)
sequence
gaattcaattttacatatattgaaaatttaaagatgaatattactagaag
ttttcaaatattttactaattctttgttagttaggtaaatatttgattgt
aaaccattgccatacattatactgtattctgaagctgtcttcattgcttg
cattgtatctgtagaatccattggctgcagttataatgcaagttttgggg
ctgatctaattgtaattttaatccttacttgctttataaagagttgagtt
tacacttaaaggaggtcatttaatactaaatagttttctagaattttata
ctggaatattttactaacattcagacattacttgcaagaatatactgtat
tattgtagcattcattctgggttctttttcaaggaaatgttatgggacca
tattttgctttttgtgctgtggtggatggtattcagtacaagacaggact
gggacagaataaaaaggaatcaagatccaatgcagcaaagttagctcttg
acgagcttctacaactggatgagcctgaaccgagagttttagaaccagca
ggtaaggggaactgatgtgtatgcttgagtgtgttattcccaaaaggagt
caagacaggcttacttaacacctgcaacatcataggatttgaatatttct
tttcagttgctgtttgctgaaatgtttcatagaattatcttgtattttta
tcaccaaaagatacaatcaagttttgccagttctcatactaaaaggcata
gtctttgtggctttgacttaaatttcccaattaatctgtgatttactgtg
tttattggacattatctttttaagagggagagacagattatgtttaagtc
attttttccattttcaattagttctactgttactgacttttaaaactcta
ggtctattctggtatttatagatatctgatgtacaaataaaaacattcta
tcccgagggttaccttactttattgtagtatctttgatgtacaaaacatt
tgctttcgataaatcagtttcttttgttggggtgtacgtggtgcatacca
agaaaattattgccaaatatgtcatg
gaattcccatgtactcaaggttcggttctaatcgaaggtctctgacctac
atgtttcagaatatgggaatgtaactttagggaaaatctgcctgtaagtt
aaaataaatgtataaaacaaaactgcttgctaacgagggtgctgggatta
gaactggtgtcactcccacgcagagggtcaggcaggagtcctgggctttt
gtttattgagtatggaaaatttctttgaatttctacattatttctttgaa
taaatagcccttggactttattgtaaatatctaaatgtgtgtccatggag
tactgaaaatgtccataccctctcccacctgtttagacctgtcttttccc
tttgttttgttttgttttgttttgttttgttttgttgacacatggttggc
ctggcactatacagccttgagcttgcaattcttcctcggcctcagggtgg
tgggttgataggtgtgcataccaggcccatcccagtgctgtcttttgcta
catgttcttaaacctcagtgacaggggtacttgtggcctatagagggccc
atgccaggatcctggcattttaaactcattacagtggtagatattattaa
ttatgtctgaagcaatgtttctgttttatctctcatctttgttccctcgt
ccctcactgtctatgaggctcttctgatactgtgctaatcaggcaggatg
ttttaagtcctgacccttgtacctctgaatgctgtagttttgtacatctg
aatgctattgagtctgtgaccttggcctgaccctccttcctgctcagtcc
ttcaaggctgtatgtagtgcctccaggaagtctctgttgggggaagacag
acaggccaggtcctgccagagaccctgagtcccttgggaaagctcagagt
gtgttgctgtttctgagagacctgggtacttgtctgctagctcacgtcta
ccacctttgcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36965714_36966802
seq2: B6Ng01-020H23.b_43_1118

seq1  GAATTCAATTTTACATATATTGAAAATTTAAAGATGAATATTACTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTACATATATTGAAAATTTAAAGATGAATATTACTAGAAG  50

seq1  TTTTCAAATATTTTACTAATTCTTTGTTAGTTAGGTAAATATTTGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATATTTTACTAATTCTTTGTTAGTTAGGTAAATATTTGATTGT  100

seq1  AAACCATTGCCATACATTATACTGTATTCTGAAGCTGTCTTCATTGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGCCATACATTATACTGTATTCTGAAGCTGTCTTCATTGCTTG  150

seq1  CATTGTATCTGTAGAATCCATTGGCTGCAGTTATAATGCAAGTTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATCTGTAGAATCCATTGGCTGCAGTTATAATGCAAGTTTTGGGG  200

seq1  CTGATCTAATTGTAATTTTAATCCTTACTTGCTTTATAAAGAGTTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTAATTGTAATTTTAATCCTTACTTGCTTTATAAAGAGTTGAGTT  250

seq1  TACACTTAAAGGAGGTCATTTAATACTAAATAGTTTTCTAGAATTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTAAAGGAGGTCATTTAATACTAAATAGTTTTCTAGAATTTTATA  300

seq1  CTGGAATATTTTACTAACATTCAGACATTACTTGCAAGAATATACTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATATTTTACTAACATTCAGACATTACTTGCAAGAATATACTGTAT  350

seq1  TATTGTAGCATTCATTCTGGGTTCTTTTTCAAGGAAATGTTATGGGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGCATTCATTCTGGGTTCTTTTTCAAGGAAATGTTATGGGACCA  400

seq1  TATTTTGCTTTTTGTGCTGTGGTGGATGGTATTCAGTACAAGACAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTTTTGTGCTGTGGTGGATGGTATTCAGTACAAGACAGGACT  450

seq1  GGGACAGAATAAAAAGGAATCAAGATCCAATGCAGCAAAGTTAGCTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAATAAAAAGGAATCAAGATCCAATGCAGCAAAGTTAGCTCTTG  500

seq1  ACGAGCTTCTACAACTGGATGAGCCTGAACCGAGAGTTTTAGAACCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCTTCTACAACTGGATGAGCCTGAACCGAGAGTTTTAGAACCAGCA  550

seq1  GGTAAGGGGAACTGATGTGTATGCTTGAGTGTGTTATTCCCAAAAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGGAACTGATGTGTATGCTTGAGTGTGTTATTCCCAAAAGGAGT  600

seq1  CAAGACAGGCTTACTTAACACCTGCAACATCATAGGATTTGAATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGGCTTACTTAACACCTGCAACATCATAGGATTTGAATATTTCT  650

seq1  TTTCAGTTGCTGTTTGCTGAAATGTTTCATAGAATTATCTTGTATTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGCTGTTTGCTGAAATGTTTCATAGAATTATCTTGTATTTTTA  700

seq1  TCACCAAAAGATACAATCAAGTTTTGCCAGTTCTCATACTAAAAGGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAAGATACAATCAAGTTTTGCCAGTTCTCATACTAAAAGGCATA  750

seq1  GTCTTTGTGGCTTTGACTTAAATTTCCCAATTAATCTGTGATTTACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGGCTTTGACTTAAATTTCCCAATTAATCTGTGATTTACTGTG  800

seq1  TTTATTGGACATTATCTTTTTAAGAGGGAGAGACAGATTATGTTTAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGACATTATCTTTTTAAGAGGGAGAGACAGATTATGTTTAAGTC  850

seq1  ATTTTTTCCATTTTCAATTAGTTCTACTGTTACTGACTTTTAAAACTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCATTTTCAATTAGTTCTACTGTTACTGACTTTTAAAACTCTA  900

seq1  GGTCTATTCTGGTATTTATAAGATATCTGATGTACAAATAAAAACATTCT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTCTATTCTGGTATTTAT-AGATATCTGATGTACAAATAAAAACATTCT  949

seq1  ATCCCGAGGGTTACCTTTAACTTTATTGGTAGTATCTTTTGATGTACAAA  1000
      |||||||||||||||||  |||||||| |||||||| |||||||||||||
seq2  ATCCCGAGGGTTACCTT--ACTTTATT-GTAGTATC-TTTGATGTACAAA  995

seq1  ACATTTTGCTTTCGATAAATCCAGTTTTCTTTTGTT-GTGTGTACCTTTG  1049
      ||| |||||||||||||||| ||| ||||||||||| | ||||||   ||
seq2  ACA-TTTGCTTTCGATAAAT-CAG-TTTCTTTTGTTGGGGTGTAC--GTG  1040

seq1  GTGCCATACCCAAGAAATTATTGCCAAATATAGTGTCATG  1089
      ||| |||||| |  ||||||||||||||||   |||||||
seq2  GTG-CATACCAAGAAAATTATTGCCAAATA---TGTCATG  1076

seq1: chr3_37054852_37055820
seq2: B6Ng01-020H23.g_68_1031 (reverse)

seq1  CCAAGCAAAGGTGGTAGACGTGAGCTAGCAGACATGGTACCCAGGTCTCT  50
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CCAAGCAAAGGTGGTAGACGTGAGCTAGCAGACA-AGTACCCAGGTCTCT  49

seq1  CAGAAACAGGCACAACACTCTGAGGCTTTCCCAAGGGACTCAGGGTCTCT  100
      |||||||| |||  ||||||||| ||||||||||||||||||||||||||
seq2  CAGAAACA-GCAACACACTCTGA-GCTTTCCCAAGGGACTCAGGGTCTCT  97

seq1  GGCAGGACCTGGCCTTGTCTGTCTTCCCCCAACAGAGACTTCCTGGAGGC  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAGGACCTGGCC-TGTCTGTCTTCCCCCAACAGAGACTTCCTGGAGGC  146

seq1  AACTACATACAGCCTTGAAGGACTGAGCAGGAAGGAGGGTCAGGCCAAGG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTACATACAGCCTTGAAGGACTGAGCAGGAAGGAGGGTCAGGCCAAGG  195

seq1  TCACAGACTCAATAGCATTCAGATGTACAAAACTACAGCATTCAGAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTCAATAGCATTCAGATGTACAAAACTACAGCATTCAGAGGTA  245

seq1  CAAGGGTCAGGACTTAAAACATCCTGCCTGATTAGCACAGTATCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTCAGGACTTAAAACATCCTGCCTGATTAGCACAGTATCAGAAGA  295

seq1  GCCTCATAGACAGTGAGGGACGAGGGAACAAAGATGAGAGATAAAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATAGACAGTGAGGGACGAGGGAACAAAGATGAGAGATAAAACAGA  345

seq1  AACATTGCTTCAGACATAATTAATAATATCTACCACTGTAATGAGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCTTCAGACATAATTAATAATATCTACCACTGTAATGAGTTTAA  395

seq1  AATGCCAGGATCCTGGCATGGGCCCTCTATAGGCCACAAGTACCCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGATCCTGGCATGGGCCCTCTATAGGCCACAAGTACCCCTGTC  445

seq1  ACTGAGGTTTAAGAACATGTAGCAAAAGACAGCACTGGGATGGGCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTTAAGAACATGTAGCAAAAGACAGCACTGGGATGGGCCTGGT  495

seq1  ATGCACACCTATCAACCCACCACCCTGAGGCCGAGGAAGAATTGCAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCTATCAACCCACCACCCTGAGGCCGAGGAAGAATTGCAAGCT  545

seq1  CAAGGCTGTATAGTGCCAGGCCAACCATGTGTCAACAAAACAAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTATAGTGCCAGGCCAACCATGTGTCAACAAAACAAAACAAAA  595

seq1  CAAAACAAAACAAAACAAAGGGAAAAGACAGGTCTAAACAGGTGGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAGGGAAAAGACAGGTCTAAACAGGTGGGAGAG  645

seq1  GGTATGGACATTTTCAGTACTCCATGGACACACATTTAGATATTTACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGACATTTTCAGTACTCCATGGACACACATTTAGATATTTACAAT  695

seq1  AAAGTCCAAGGGCTATTTATTCAAAGAAATAATGTAGAAATTCAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAGGGCTATTTATTCAAAGAAATAATGTAGAAATTCAAAGAAA  745

seq1  TTTTCCATACTCAATAAACAAAAGCCCAGGACTCCTGCCTGACCCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATACTCAATAAACAAAAGCCCAGGACTCCTGCCTGACCCTCTGC  795

seq1  GTGGGAGTGACACCAGTTCTAATCCCAGCACCCTCGTTAGCAAGCAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGACACCAGTTCTAATCCCAGCACCCTCGTTAGCAAGCAGTTT  845

seq1  TGTTTTATACATTTATTTTAACTTACAGGCAGATTTTCCCTAAAGTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATACATTTATTTTAACTTACAGGCAGATTTTCCCTAAAGTTACA  895

seq1  TTCCCATATTCTGAAACATGTAGGTCAGAGACCTTCGATTAGAACCGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATATTCTGAAACATGTAGGTCAGAGACCTTCGATTAGAACCGAAC  945

seq1  CTTGAGTACATGGGAATTC  969
      |||||||||||||||||||
seq2  CTTGAGTACATGGGAATTC  964