BAC Information

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BAC

Clone NameB6Ng01-020I22
Chromosome3 (Build37)
Map Location 134,944,549 - 135,088,543
singlet/doubletdoublet
Overlap geneBdh2, C80638, 4933425K02Rik, Zcd2
Upstream genePpia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe
Downstream geneUbe2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020I22.bB6Ng01-020I22.g
ACCDH853323DH853324
length1,0721,082
definitionDH853323|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I22, 5' end.DH853324|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,944,549 - 134,945,631)(135,087,452 - 135,088,543)
sequence
gaattccagaaaatactctgagcctttttctagtaaaaagaaatttaggg
ttttagtacaatctttagaagtaggaaagtcattatgttaagagtgggtt
aagtttacaatttctggacgtattcccactctaaaccccaccctgttacc
ccccctccccaaaaaaaaaacaaaaacaaaaaaacaaaaaaacccatgtt
gccttgagactgcttggaggtcagctggagaaaggtttagaagtaaacag
aaactaaattttgtgcctggttgcttctgggtggtctcgggggtcatgga
ggtgcttaagagagcactgagcaggtgccttcactgattctcaacctgtg
ggtcgcgacccccacgcctaggttctatctaattagatattctgaatgtc
aggtgtttacattatggttcataacagcaccaaaattacagttgtgaagt
agcaacaaaaatatgggtcaccacaacatgaagaactgcgttaaagtgtc
gctgcattaggacggttgagaaccagggctttggtgggcgaatacccagg
gtcccttagtgaaggccctggactgtgagtttcttatgctgtactcaggg
tcgggggaggcagggacggctcatcccttcctaaaagcacaagttagctt
tctctcaactcctaccacactctaagtgaaatttctctctgcgtgctact
ggtaaaaagcaaagcaaagcgtactgcatcagaattggggagacgccatg
aagccagatcctgttacccagcatgtgcgcatgattggatcacagagtgg
gggtcatcagttggcttcagaagcccctcttaccgtgtgactgtgtcggg
ctggatctcagaggaagctctaataggaacctaacaggatggcttttatt
agggagatactgttgtgggagaaaatgacaggaaccaggtgacgatggga
gagacttcagatggatcgaggcaggagaagcagaagtgattttggggtgg
ggccaccctgaatgcttccttatagggtggggcgggggacctaaggaggc
aggaagaaagaattcgtacgtc
gaattcaaaaacattcaaaggaaaacaacaattgcagtggtggtattgcc
aactgtggctctaaagaatactgagtctctctgggtattagacataccct
atgtggtgacaagggtgtctgagtgtgctgaattgttgagtctctctggg
tattagacataccctatatggtgacactggtgtctgagtacactgaattg
taatctggcacttgaatatttgtgtttctaagacaggtttctacctttta
tcccaaatgaaaaactgtagaggtcttaagaatgtcattcaacatagcct
attttgtccttgtcatgatgaattaaaagaaatatccaatgtcctttcgc
agacattcttcagtgtaccctatgttcaacttacctcctacttcaaccat
ttccacaaggacggtatacctgattagcagaggtaatacagttcagaggg
caagaatgcttaaatttcactccttttaagacaaacaactttgggacctt
ttttccttcagacaaaaacaaacaaaacaaaacaaataaacaaaaaacct
aacctcccaaaaggaatggaaatatggaaatcctaatggaaacagtaatc
ttttaaatcaccactttttggtgtatcatttgctatgccatagctcatag
acatgttctatatccaaaaaccttcaattatccaattgtacttggtcaat
ctgatcaggttaaaaatgatagtaattttaaaaaaacttttcatcacctg
ctacttttctttttagtgttttagtgaaaaaaatgatcagagttaaattt
aaacagttcaaagaacagtttacttttctttttttttttttagatttttt
ttttaaattagtattttcctcgtttacattttcaatgctatcccaaaggt
ccccatacccacccccccccacagtttacttttcaaactaaaataccaac
aaaaaaataaagctgatacagctcgatgttacgtgggcataccaaatgct
gaatgttacagaacactgaggtcaggttccaagaaaccttttaccaggtc
tgctctggccttccctagcctagacttgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134944549_134945631
seq2: B6Ng01-020I22.b_43_1114

seq1  GAATTCCAGAAAATACTCTGAGCCTTTTTCTAGTAAAAAGAAATTTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAATACTCTGAGCCTTTTTCTAGTAAAAAGAAATTTAGGG  50

seq1  TTTTAGTACAATCTTTAGAAGTAGGAAAGTCATTATGTTAAGAGTGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTACAATCTTTAGAAGTAGGAAAGTCATTATGTTAAGAGTGGGTT  100

seq1  AAGTTTACAATTTCTGGACGTATTCCCACTCTAAACCCCACCCTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACAATTTCTGGACGTATTCCCACTCTAAACCCCACCCTGTTACC  150

seq1  CCCCCTCCCCAAAAAAAAAACAAAAACAAAAAAACAAAAAAACCCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCAAAAAAAAAACAAAAACAAAAAAACAAAAAAACCCATGTT  200

seq1  GCCTTGAGACTGCTTGGAGGTCAGCTGGAGAAAGGTTTAGAAGTAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGACTGCTTGGAGGTCAGCTGGAGAAAGGTTTAGAAGTAAACAG  250

seq1  AAACTAAATTTTGTGCCTGGTTGCTTCTGGGTGGTCTCGGGGGTCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATTTTGTGCCTGGTTGCTTCTGGGTGGTCTCGGGGGTCATGGA  300

seq1  GGTGCTTAAGAGAGCACTGAGCAGGTGCCTTCACTGATTCTCAACCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTAAGAGAGCACTGAGCAGGTGCCTTCACTGATTCTCAACCTGTG  350

seq1  GGTCGCGACCCCCACGCCTAGGTTCTATCTAATTAGATATTCTGAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCGACCCCCACGCCTAGGTTCTATCTAATTAGATATTCTGAATGTC  400

seq1  AGGTGTTTACATTATGGTTCATAACAGCACCAAAATTACAGTTGTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTACATTATGGTTCATAACAGCACCAAAATTACAGTTGTGAAGT  450

seq1  AGCAACAAAAATATGGGTCACCACAACATGAAGAACTGCGTTAAAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAAAATATGGGTCACCACAACATGAAGAACTGCGTTAAAGTGTC  500

seq1  GCTGCATTAGGACGGTTGAGAACCAGGGCTTTGGTGGGCGAATACCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTAGGACGGTTGAGAACCAGGGCTTTGGTGGGCGAATACCCAGG  550

seq1  GTCCCTTAGTGAAGGCCCTGGACTGTGAGTTTCTTATGCTGTACTCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAGTGAAGGCCCTGGACTGTGAGTTTCTTATGCTGTACTCAGGG  600

seq1  TCGGGGGAGGCAGGGACGGCTCATCCCTTCCTAAAAGCACAAGTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGAGGCAGGGACGGCTCATCCCTTCCTAAAAGCACAAGTTAGCTT  650

seq1  TCTCTCAACTCCTACCACACTCTAAGTGAAATTTCTCTCTGCGTGCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAACTCCTACCACACTCTAAGTGAAATTTCTCTCTGCGTGCTACT  700

seq1  GGTAAAAAGCAAAGCAAAGCGTACTGCATCAGAATTGGGGAGACGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAGCAAAGCAAAGCGTACTGCATCAGAATTGGGGAGACGCCATG  750

seq1  AAGCCAGATCCTGTTACCCAGCATGTGCGCATGATTGGATCACAGAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGATCCTGTTACCCAGCATGTGCGCATGATTGGATCACAGAGTGG  800

seq1  GGGTCATCAGTTGGCTTCAGAAGCCCCTCTTACCGTGTGACTGTGTCGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCAGTTGGCTTCAGAAGCCCCTCTTACCGTGTGACTGTGTCGGG  850

seq1  CTGGATCTCAGAGGAAGGCTCTAATAGGAACCTAACAGGATGGCTTTTAT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGATCTCAGAGGAA-GCTCTAATAGGAACCTAACAGGATGGCTTTTAT  899

seq1  TAGGGGAGATACTGTTGTGGGAGAAAATGACAAGGAACCAGGTGACGATG  950
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TA-GGGAGATACTGTTGTGGGAGAAAATGAC-AGGAACCAGGTGACGATG  947

seq1  GGAGAGACTTCAGATGGATCGAGGCAGGGAGAAGGCAGAAGTGGATTTGG  1000
      |||||||||||||||||||||||||| |||||| |||||||| ||||| |
seq2  GGAGAGACTTCAGATGGATCGAGGCA-GGAGAA-GCAGAAGT-GATTTTG  994

seq1  GGGTGGGGGCACCCTGAATGCTTCCTTCAGTAGGGTGGGGCTGGGGACCC  1050
      |||||||| ||||||||||||||||||   ||||||||||| ||||| ||
seq2  GGGTGGGGCCACCCTGAATGCTTCCTT--ATAGGGTGGGGCGGGGGA-CC  1041

seq1  TAAGGAGGCTAGGGAGAAAGAGTTCTGTACGTC  1083
      ||||||||| ||| ||||||| ||| |||||||
seq2  TAAGGAGGC-AGGAAGAAAGAATTC-GTACGTC  1072

seq1: chr3_135087452_135088543
seq2: B6Ng01-020I22.g_67_1148 (reverse)

seq1  ACCACAAGTACTAGAGCTAAGGGAAGGCCAGAGCAAGTACCTGGTAAAAG  50
      ||||||||| |||| ||| ||||||||||||||||   ||||||||||||
seq2  ACCACAAGT-CTAG-GCT-AGGGAAGGCCAGAGCA--GACCTGGTAAAAG  45

seq1  TATCCTGGAAACTTGACATCAGTGTTCTGTAACATTCAGCATTTGGTATG  100
        | || | ||| |||| ||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGAACCTGACCTCAGTGTTCTGTAACATTCAGCATTTGGTATG  95

seq1  CCCACGTAACATCGAGCTGTAATCAGCTTTATTTTTTTGTTGGTATTTTA  150
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  CCCACGTAACATCGAGCTGT-ATCAGCTTTATTTTTTTGTTGGTATTTT-  143

seq1  AGTTTGAAAAGTAAACTGTTGGGGGGGGGTGGGTATGGGGGACCTTTGGG  200
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AGTTTGAAAAGTAAACTG-TGGGGGGGGGTGGGTAT-GGGGACCTTTGGG  191

seq1  ATAGCATTGAAAATGTAAACGAGGAAAATACCTAATTTAAAAAAAAAATC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGCATTGAAAATGTAAACGAGGAAAATA-CTAATTTAAAAAAAAAATC  240

seq1  TAAAAAAAAAAAAAGAAAAGTAAACTGTTCTTTGAACTGTTTAAATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAGAAAAGTAAACTGTTCTTTGAACTGTTTAAATTTAA  290

seq1  CTCTGATCATTTTTTTCACTAAAACACTAAAAAGAAAAGTAGCAGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCATTTTTTTCACTAAAACACTAAAAAGAAAAGTAGCAGGTGAT  340

seq1  GAAAAGTTTTTTTAAAATTACTATCATTTTTAACCTGATCAGATTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTTTTTAAAATTACTATCATTTTTAACCTGATCAGATTGACCA  390

seq1  AGTACAATTGGATAATTGAAGGTTTTTGGATATAGAACATGTCTATGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATTGGATAATTGAAGGTTTTTGGATATAGAACATGTCTATGAGC  440

seq1  TATGGCATAGCAAATGATACACCAAAAAGTGGTGATTTAAAAGATTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATAGCAAATGATACACCAAAAAGTGGTGATTTAAAAGATTACTG  490

seq1  TTTCCATTAGGATTTCCATATTTCCATTCCTTTTGGGAGGTTAGGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTAGGATTTCCATATTTCCATTCCTTTTGGGAGGTTAGGTTTTT  540

seq1  TGTTTATTTGTTTTGTTTTGTTTGTTTTTGTCTGAAGGAAAAAAGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTGTTTTGTTTTGTTTGTTTTTGTCTGAAGGAAAAAAGGTCCC  590

seq1  AAAGTTGTTTGTCTTAAAAGGAGTGAAATTTAAGCATTCTTGCCCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTTTGTCTTAAAAGGAGTGAAATTTAAGCATTCTTGCCCTCTGA  640

seq1  ACTGTATTACCTCTGCTAATCAGGTATACCGTCCTTGTGGAAATGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTACCTCTGCTAATCAGGTATACCGTCCTTGTGGAAATGGTTGA  690

seq1  AGTAGGAGGTAAGTTGAACATAGGGTACACTGAAGAATGTCTGCGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGGTAAGTTGAACATAGGGTACACTGAAGAATGTCTGCGAAAGG  740

seq1  ACATTGGATATTTCTTTTAATTCATCATGACAAGGACAAAATAGGCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGATATTTCTTTTAATTCATCATGACAAGGACAAAATAGGCTATG  790

seq1  TTGAATGACATTCTTAAGACCTCTACAGTTTTTCATTTGGGATAAAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGACATTCTTAAGACCTCTACAGTTTTTCATTTGGGATAAAAGGT  840

seq1  AGAAACCTGTCTTAGAAACACAAATATTCAAGTGCCAGATTACAATTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGTCTTAGAAACACAAATATTCAAGTGCCAGATTACAATTCAG  890

seq1  TGTACTCAGACACCAGTGTCACCATATAGGGTATGTCTAATACCCAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGACACCAGTGTCACCATATAGGGTATGTCTAATACCCAGAGA  940

seq1  GACTCAACAATTCAGCACACTCAGACACCCTTGTCACCACATAGGGTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACAATTCAGCACACTCAGACACCCTTGTCACCACATAGGGTATG  990

seq1  TCTAATACCCAGAGAGACTCAGTATTCTTTAGAGCCACAGTTGGCAATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACCCAGAGAGACTCAGTATTCTTTAGAGCCACAGTTGGCAATAC  1040

seq1  CACCACTGCAATTGTTGTTTTCCTTTGAATGTTTTTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCAATTGTTGTTTTCCTTTGAATGTTTTTGAATTC  1082