BAC Information

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BAC

Clone NameB6Ng01-020L03
Chromosome3 (Build37)
Map Location 25,662,951 - 25,847,838
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592, LOC621017
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L03.bB6Ng01-020L03.g
ACCDH853419DH853420
length1,1771,052
definitionDH853419|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L03, 5' end.DH853420|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,846,639 - 25,847,838)(25,662,951 - 25,664,021)
sequence
gaattcttagcaagtctcacacatagcaagcccctagtcagctttttcat
gcagcccaaatacatggatatgaagagaacttgtcattttctccttccct
tgggcagatatgcttcaatacacagctttctctagagaaattcatctcaa
aataaactcttccacatgttcattatgactgtgtagtattgggctgaaat
cacaacagcatctttgcaagttttacagagggtaacagctaactgacata
ttgttttgttcttggcctcgttgaaatcagagactttcatattaatatct
tctttttaaaaatttcttgcttcatcctaaatttgaatctatatgtttgt
aattagttgctgttaattataaagtatgttaaaaatttcaagttatttca
ccatgtaattcataaacacagaattaataattaaatttagtagcagacac
tatttcaagaccggggatagagtagtaaatgtaaaggtttttgccatcac
actataatgaggaaatgtgtaaatacgaatttaaaaatgcaatgataatt
gcacataaaaccacagaaaaggaatttgcaagctgataagtgctgtgaag
taaaccaaaggtggttgatgaccaggcacagagttagatacgtgagggag
aggatttcataaagtctgtatggtacatgaaggtaagcaaacacactaac
ccagtctcatggctaaaatggatttgcatagaaagattacacccagaaaa
caagcagagaatgacctccccaatcaaaacaacagagtatgtgaaccctg
gcaaaccatctgtagttttattttttattttactgaaatcaaataatgac
ttgatggttgtaaacagaagttattatagacaaacattaatactcattct
ccttctttggaaggtcagtgagagatattagctagatccgtgacttgaac
aaagctacccattagtaaagatggatacagtgaacaaggtctacacttaa
agaaatataacctcctattgtgtgccacttagtgaatttctgttgttcaa
gtataatgcaaacttttcttggccgaataaaatagcttctgctgtctgtc
gaccatgagtacacggagataacttgtaaccatctgagatgctctcttaa
tagttctgctgcattcctgccctcagt
gaattcattctattagcaaaaagaaaaaaaaccgacatgaattctttttt
gctaatagatggaatcaatttatgattcacattttcatatgacagagcat
atttattattcagtgctctcaagagtgtctaattatattctgtatataaa
tgatgtgttcagaatgaactattcagacaaaaataaattgaatgatatga
gacatttccgaggtattttgtttttagagccgctatagaagggataattt
aaaaacaatcctagaataattcctaatgcatctatattttagttgtatta
ctctatgtcacctacttttctccaaagcttaaatgaggcaattattcccc
atttttccgttcatgtcccatacccaaacctatctgtcaaggttgtgact
acaccttgaaaccgtgtgatttggcaaggaagctggttggttacatgagg
agctgaaatcagatttctccataataaaacattctctgataagttgtttg
tcatggatttggtatataaacaccaattagaaatgctacagattttacac
agtgccatcataatttgcattttctagtagaatgagcacactgcctttcc
ccagacatattggattcactttgcagtgagcttgggtaaatttgctatgc
tgcacacatattccttagttatgttttcttacaggttggacacagaacac
tttatgacagtctcagtcaactcgtgcctgcaggccaatgtaaggccagt
gctcacatttgtatagtctgcaagctaaggatgatttcttttttttttta
attttataatatatttttatttttttatttttttattacatatttcctca
attacatttccaatgctatcccaaaagtcccccataccctccccccactt
ccctacccactcattcccattttttttttttttttttgccctgcgttacc
tgtactggggcaatacagtttgtatgtccaatggctctctttccaggatg
gccactaggccatctttagataatatgcagctaaatcagagctcgggtac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25846639_25847838
seq2: B6Ng01-020L03.b_44_1220 (reverse)

seq1  ACTGAGTGCAGAGAATGCAAGCAGAACTATTTAAGAGAAGACTATCTCAG  50
      |||||| |||| |||||| |||||||||| |||||   |||  |||||||
seq2  ACTGAGGGCAG-GAATGC-AGCAGAACTA-TTAAG---AGAGCATCTCAG  44

seq1  -TAGTTACAGAGTTATCTACGTGTACTCATGGTCCGACCAGCAGCAGAAG  99
       | |||||| |||||||| |||||||||||||| ||||   |||||||||
seq2  ATGGTTACA-AGTTATCTCCGTGTACTCATGGT-CGACAGACAGCAGAAG  92

seq1  CTATTATTATCTGGCCAAAGAAAAGTTTGCATTATACTTAAAAAACAAAC  149
      ||||| ||||  |||| |||||||||||||||||||||| || |||    
seq2  CTATT-TTATTCGGCC-AAGAAAAGTTTGCATTATACTTGAACAAC----  136

seq1  AAAGAAAAAATACAACCTAAGGTGGCACACAATAGGAGGTTATATATTCT  199
           | |||| ||  |||| |||||||||||||||||||||||| ||||
seq2  -----AGAAATTCA--CTAA-GTGGCACACAATAGGAGGTTATAT-TTCT  177

seq1  GTAAGTGTAGACCTTGTTCACTGTATCCATCTTTACTAATGGGTAGGCTT  249
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAGTGTAGACCTTGTTCACTGTATCCATCTTTACTAATGGGTA-GCTT  226

seq1  TGTTCAAGTCACGGATCTAGCTAATATCTCTCACTGACCTTCCAAAGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGTCACGGATCTAGCTAATATCTCTCACTGACCTTCCAAAGAAG  276

seq1  GAGAATGAGTATTAATGTTTGTCTATAATAACTTCTGTTTACAACCATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAGTATTAATGTTTGTCTATAATAACTTCTGTTTACAACCATCA  326

seq1  AGTCATTATTTGATTTCAGTAAAATAAAAAATAAAACTACAGATGGTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTATTTGATTTCAGTAAAATAAAAAATAAAACTACAGATGGTTTG  376

seq1  CCAGGGTTCACATACTCTGTTGTTTTGATTGGGGAGGTCATTCTCTGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTCACATACTCTGTTGTTTTGATTGGGGAGGTCATTCTCTGCTT  426

seq1  GTTTTCTGGGTGTAATCTTTCTATGCAAATCCATTTTAGCCATGAGACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGGGTGTAATCTTTCTATGCAAATCCATTTTAGCCATGAGACTG  476

seq1  GGTTAGTGTGTTTGCTTACCTTCATGTACCATACAGACTTTATGAAATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGTGTTTGCTTACCTTCATGTACCATACAGACTTTATGAAATCC  526

seq1  TCTCCCTCACGTATCTAACTCTGTGCCTGGTCATCAACCACCTTTGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCACGTATCTAACTCTGTGCCTGGTCATCAACCACCTTTGGTTT  576

seq1  ACTTCACAGCACTTATCAGCTTGCAAATTCCTTTTCTGTGGTTTTATGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAGCACTTATCAGCTTGCAAATTCCTTTTCTGTGGTTTTATGTG  626

seq1  CAATTATCATTGCATTTTTAAATTCGTATTTACACATTTCCTCATTATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCATTGCATTTTTAAATTCGTATTTACACATTTCCTCATTATAG  676

seq1  TGTGATGGCAAAAACCTTTACATTTACTACTCTATCCCCGGTCTTGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGCAAAAACCTTTACATTTACTACTCTATCCCCGGTCTTGAAAT  726

seq1  AGTGTCTGCTACTAAATTTAATTATTAATTCTGTGTTTATGAATTACATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCTACTAAATTTAATTATTAATTCTGTGTTTATGAATTACATG  776

seq1  GTGAAATAACTTGAAATTTTTAACATACTTTATAATTAACAGCAACTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAACTTGAAATTTTTAACATACTTTATAATTAACAGCAACTAAT  826

seq1  TACAAACATATAGATTCAAATTTAGGATGAAGCAAGAAATTTTTAAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACATATAGATTCAAATTTAGGATGAAGCAAGAAATTTTTAAAAAG  876

seq1  AAGATATTAATATGAAAGTCTCTGATTTCAACGAGGCCAAGAACAAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAATATGAAAGTCTCTGATTTCAACGAGGCCAAGAACAAAACA  926

seq1  ATATGTCAGTTAGCTGTTACCCTCTGTAAAACTTGCAAAGATGCTGTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCAGTTAGCTGTTACCCTCTGTAAAACTTGCAAAGATGCTGTTGT  976

seq1  GATTTCAGCCCAATACTACACAGTCATAATGAACATGTGGAAGAGTTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGCCCAATACTACACAGTCATAATGAACATGTGGAAGAGTTTAT  1026

seq1  TTTGAGATGAATTTCTCTAGAGAAAGCTGTGTATTGAAGCATATCTGCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATGAATTTCTCTAGAGAAAGCTGTGTATTGAAGCATATCTGCCC  1076

seq1  AAGGGAAGGAGAAAATGACAAGTTCTCTTCATATCCATGTATTTGGGCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGAGAAAATGACAAGTTCTCTTCATATCCATGTATTTGGGCTG  1126

seq1  CATGAAAAAGCTGACTAGGGGCTTGCTATGTGTGAGACTTGCTAAGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAGCTGACTAGGGGCTTGCTATGTGTGAGACTTGCTAAGAATT  1176

seq1  C  1200
      |
seq2  C  1177

seq1: chr3_25662951_25664021
seq2: B6Ng01-020L03.g_69_1120

seq1  GAATTCATTCTATTAGCAAAAAGAAAAAAAACCGACATGAATTCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTATTAGCAAAAAGAAAAAAAACCGACATGAATTCTTTTTT  50

seq1  GCTAATAGATGGAATCAATTTATGATTCACATTTTCATATGACAGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGATGGAATCAATTTATGATTCACATTTTCATATGACAGAGCAT  100

seq1  ATTTATTATTCAGTGCTCTCAAGAGTGTCTAATTATATTCTGTATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTCAGTGCTCTCAAGAGTGTCTAATTATATTCTGTATATAAA  150

seq1  TGATGTGTTCAGAATGAACTATTCAGACAAAAATAAATTGAATGATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTTCAGAATGAACTATTCAGACAAAAATAAATTGAATGATATGA  200

seq1  GACATTTCCGAGGTATTTTGTTTTTAGAGCCGCTATAGAAGGGATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCCGAGGTATTTTGTTTTTAGAGCCGCTATAGAAGGGATAATTT  250

seq1  AAAAACAATCCTAGAATAATTCCTAATGCATCTATATTTTAGTTGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATCCTAGAATAATTCCTAATGCATCTATATTTTAGTTGTATTA  300

seq1  CTCTATGTCACCTACTTTTCTCCAAAGCTTAAATGAGGCAATTATTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTCACCTACTTTTCTCCAAAGCTTAAATGAGGCAATTATTCCCC  350

seq1  ATTTTTCCGTTCATGTCCCATACCCAAACCTATCTGTCAAGGTTGTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCGTTCATGTCCCATACCCAAACCTATCTGTCAAGGTTGTGACT  400

seq1  ACACCTTGAAACCGTGTGATTTGGCAAGGAAGCTGGTTGGTTACATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGAAACCGTGTGATTTGGCAAGGAAGCTGGTTGGTTACATGAGG  450

seq1  AGCTGAAATCAGATTTCTCCATAATAAAACATTCTCTGATAAGTTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATCAGATTTCTCCATAATAAAACATTCTCTGATAAGTTGTTTG  500

seq1  TCATGGATTTGGTATATAAACACCAATTAGAAATGCTACAGATTTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTTGGTATATAAACACCAATTAGAAATGCTACAGATTTTACAC  550

seq1  AGTGCCATCATAATTTGCATTTTCTAGTAGAATGAGCACACTGCCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATCATAATTTGCATTTTCTAGTAGAATGAGCACACTGCCTTTCC  600

seq1  CCAGACATATTGGATTCACTTTGCAGTGAGCTTGGGTAAATTTGCTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATATTGGATTCACTTTGCAGTGAGCTTGGGTAAATTTGCTATGC  650

seq1  TGCACACATATTCCTTAGTTATGTTTTCTTACAGGTTGGACACAGAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATATTCCTTAGTTATGTTTTCTTACAGGTTGGACACAGAACAC  700

seq1  TTTATGACAGTCTCAGTCAACTCGTGCCTGCAGGCCAATGTAAGGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACAGTCTCAGTCAACTCGTGCCTGCAGGCCAATGTAAGGCCAGT  750

seq1  GCTCACATTTGTATAGTCTGCAAGCTAAGGATGATTTCTTTTTTTTTTTT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTCACATTTGTATAGTCTGCAAGCTAAGGATGATTTC-TTTTTTTTTTT  799

seq1  AATTTTATAATATATTTTTATTTTTTTATTTTTTTATTACATATTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTTATAATATATTTTTATTTTTTTATTTTTTTATTACATA-TTTCCT  848

seq1  CAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCT-CCCCCCA  897

seq1  CTTCCCTACCCACTCATTCCCATTTTTTTTTTTTTTTTTTTTTGGCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||    ||||| 
seq2  CTTCCCTACCCACTCATTCCCATTTTTTTTTTTTTTTTTT----GCCCT-  942

seq1  GCGTTACCCTGTACTGGGGCATATACAGTTTGTATGTCCAATGGGCCTCT  1000
      |||||| |||||||||||||| ||||||||||||||||||||||  ||||
seq2  GCGTTA-CCTGTACTGGGGCA-ATACAGTTTGTATGTCCAATGG--CTCT  988

seq1  CTTTCCAGTGATGGCCCACTAGGCCATCTTTTGATACATATGCAGCTAGA  1050
      |||||||| ||||| |||||||||||||||| |||| ||||||||||| |
seq2  CTTTCCAG-GATGG-CCACTAGGCCATCTTTAGATA-ATATGCAGCTA-A  1034

seq1  GTCAAGAGCTCCGGGGTACTG  1071
       || |||||||  ||||||||
seq2  ATC-AGAGCTC--GGGTACTG  1052