BAC Information

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BAC

Clone NameB6Ng01-020O06
Chromosome3 (Build37)3 (Build37)
Map Location 96,091,659 - 96,092,75396,238,023 - 96,238,301
singlet/doubletsingletsinglet
Overlap geneFcgr1
Upstream gene4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O06.bB6Ng01-020O06.g
ACCDH853559DH853560
length1,074934
definitionDH853559|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O06, 5' end.DH853560|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,091,659 - 96,092,753)(96,238,023 - 96,238,301)
sequence
gaattcttagatgacccccagagaatcatacctaggcccttgactgtgat
gaatgcctatgattggcttctatagccaagaaactatgacaaaggccagg
tgcacatttgctctatctggctcttcctcagcaggctagatggagacgtt
cctggtgaccttgaggcagtaagctgccacaatgtgacacataacctgtg
agggttacatggcaagggcttctggtcatgtggtcccccagtggacagcc
aattagaaaacgaggacactagacctgtaatcctgaggaattgaattctg
ccaatgattttgtaaatgtgaagagagacccaaaaggaacacagtaaaca
ctctacagcaaatcgatggaaactgaaacataataatgtgtatggttgtg
gcaatctgttatgatgaagtagaaagtggtgtgctgtaactgctgagccc
ctgttagtaaagatgaggtgttctgggaaggggggcttttcactccacag
aactcatctaagaaaagcggtgggcagtgtgcggctgtttctgtggtctc
agccactgctacattccttctaaatgcaattcctacttgtatctattcct
gtccccaaccaagaagctccaccctgcactgtctagacacactcgtgtct
ttgcttcatgtctgaaacacagtagaaggtttttatatatctccatatga
aattaccaaaacacaagtaaaaaaatacacactgaaattagctggactca
aagtctcaatatctcaatgaacttttatacagcaagaacagccattccga
atggcagctgtggggaatcacattttggttgctactatgcactatgggat
gtattttttatgcacctattcatcaacaagagtgaaaaaatcatgacaga
cctagaactagaaagcataggctttctgtcctctgtcatgcaacatgtcc
tttaactgcagtctgtccttcaggatctatatgtaccctctctgttttct
tctttgtatactgcacccaattacattgttacatttgtttttgctagttc
tacattaagggaaatgtgggattt
gaattccccttccccacacaggacaagaagcagacaaaactcgtgagatg
ccaggttgccagaccctgggaatcagggaagccctggaattgagaaggaa
caaggcagtccagccatggctcggctcactgccttcagatagtgcccaca
caccaaaggggtctgaggccaaatcccaggatggaggcaagagagtcggt
acggtaataactagtagagaaaaacttcacaatgtctgtatacaactaag
gagtcccggccggcacgccaaggcacaggcagtctgcatacaactaagga
gtaccaagtgtgctagatagatttatgtcaacttgtcacaagctaaagtc
atctgagagggagggaaccttaataaaatgcctctatatgagaggactat
aggccagccagtaggacattttctttatctatctatctatctatctatct
atctatctatctatctatctatctaagattttatttaatttaagtatatc
agtacactgtcatgtcttcagacacacagaagagggcattggatcccatt
acagatggctgtgagccaccatgtggttgctgggaattgaactcaggacc
tctggaagagcaaccagtgctcttaacctctgagccatctctccagccca
ggacattttcttaattagtgattgatggtgaggacccaccaccaaccgtt
acttagctactggttctgggttctataagaaaacaggcgaagcaagactc
gatgagcaaaccagcaagcagcatccctccatagcctctgcatcagctcc
tgcctccagatttctgccctgtgtgactccttttgataatgagcagtgac
atggaaggtaagccaaataaacctttttctccctttgactttggtcattg
tggtggtttgaatgtgtttgaatgcttggcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96091659_96092753
seq2: B6Ng01-020O06.b_44_1117

seq1  GAATTCTTAGATGACCCCCAGAGAATCATACCTAGGCCCTTGACTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATGACCCCCAGAGAATCATACCTAGGCCCTTGACTGTGAT  50

seq1  GAATGCCTATGATTGGCTTCTATAGCCAAGAAACTATGACAAAGGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTATGATTGGCTTCTATAGCCAAGAAACTATGACAAAGGCCAGG  100

seq1  TGCACATTTGCTCTATCTGGCTCTTCCTCAGCAGGCTAGATGGAGACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTGCTCTATCTGGCTCTTCCTCAGCAGGCTAGATGGAGACGTT  150

seq1  CCTGGTGACCTTGAGGCAGTAAGCTGCCACAATGTGACACATAACCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACCTTGAGGCAGTAAGCTGCCACAATGTGACACATAACCTGTG  200

seq1  AGGGTTACATGGCAAGGGCTTCTGGTCATGTGGTCCCCCAGTGGACAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACATGGCAAGGGCTTCTGGTCATGTGGTCCCCCAGTGGACAGCC  250

seq1  AATTAGAAAACGAGGACACTAGACCTGTAATCCTGAGGAATTGAATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAACGAGGACACTAGACCTGTAATCCTGAGGAATTGAATTCTG  300

seq1  CCAATGATTTTGTAAATGTGAAGAGAGACCCAAAAGGAACACAGTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATTTTGTAAATGTGAAGAGAGACCCAAAAGGAACACAGTAAACA  350

seq1  CTCTACAGCAAATCGATGGAAACTGAAACATAATAATGTGTATGGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGCAAATCGATGGAAACTGAAACATAATAATGTGTATGGTTGTG  400

seq1  GCAATCTGTTATGATGAAGTAGAAAGTGGTGTGCTGTAACTGCTGAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGTTATGATGAAGTAGAAAGTGGTGTGCTGTAACTGCTGAGCCC  450

seq1  CTGTTAGTAAAGATGAGGTGTTCTGGGAAGGGGGGCTTTTCACTCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTAAAGATGAGGTGTTCTGGGAAGGGGGGCTTTTCACTCCACAG  500

seq1  AACTCATCTAAGAAAAGCGGTGGGCAGTGTGCGGCTGTTTCTGTGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTAAGAAAAGCGGTGGGCAGTGTGCGGCTGTTTCTGTGGTCTC  550

seq1  AGCCACTGCTACATTCCTTCTAAATGCAATTCCTACTTGTATCTATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGCTACATTCCTTCTAAATGCAATTCCTACTTGTATCTATTCCT  600

seq1  GTCCCCAACCAAGAAGCTCCACCCTGCACTGTCTAGACACACTCGTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAACCAAGAAGCTCCACCCTGCACTGTCTAGACACACTCGTGTCT  650

seq1  TTGCTTCATGTCTGAAACACAGTAGAAGGTTTTTATATATCTCCATATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATGTCTGAAACACAGTAGAAGGTTTTTATATATCTCCATATGA  700

seq1  AATTACCAAAACACAAGTAAAAAAATACACACTGAAATTAGCTGGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAAAACACAAGTAAAAAAATACACACTGAAATTAGCTGGACTCA  750

seq1  AAGTCTCAATATCTCAATGAACTTTTATACAGCAAGAACAGCCATTCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAATATCTCAATGAACTTTTATACAGCAAGAACAGCCATTCCGA  800

seq1  ATGGCAGCTGTGGGGAATCACATTTTGGTTGCTACTATGCACTATGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTGTGGGGAATCACATTTTGGTTGCTACTATGCACTATGGGAT  850

seq1  GTATTTTTTATGCACCTATTCATCAACAAGAGTGAAAAAAATCATGACAG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTTTTTATGCACCTATTCATCAACAAGAGTG-AAAAAATCATGACAG  899

seq1  ACCTAGAACTAGAAAAGCAATAGGCTTTCTGTCCTCTGTCATGCAACATG  950
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  ACCTAGAACTAG-AAAGC-ATAGGCTTTCTGTCCTCTGTCATGCAACATG  947

seq1  TCCTTTAACTGCAGTCTGTCCTTCCAGGATCCTAATATGTACCCTCTCTT  1000
      ||||||||||||||||||||||| |||||||   |||||||||||||| |
seq2  TCCTTTAACTGCAGTCTGTCCTT-CAGGATC--TATATGTACCCTCTC-T  993

seq1  GTTTTCTCTTCTATATGTTATACTGCACCCAAATGTACATTTGTTTACAT  1050
      ||||  ||||||   |  ||||||||||||||   ||||||   ||||||
seq2  GTTT--TCTTCT---TTGTATACTGCACCCAA--TTACATT--GTTACAT  1034

seq1  ATGTTTTTTGCTAGATTCTACATCTAAGGGGAAATGTGGGGATTT  1095
       || |||||||||| |||||||| ||| ||||||||| |||||||
seq2  TTG-TTTTTGCTAG-TTCTACAT-TAA-GGGAAATGT-GGGATTT  1074

seq1: chr3_96238023_96238301
seq2: B6Ng01-020O06.g_68_351

seq1  GAATTCTCCCTTCCCCACACAGGACAAGAAGCAGACAAAACCCGTGAGAT  50
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTC-CCCTTCCCCACACAGGACAAGAAGCAGACAAAACTCGTGAGAT  49

seq1  GCCAGGTTGCCAGACCCTGGGAATCAGGGAAGCCCTGGAAGTGAGACGGA  100
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  GCCAGGTTGCCAGACCCTGGGAATCAGGGAAGCCCTGGAATTGAGAAGGA  99

seq1  ATAAGGCAGTCCAGCCATGGCTTGGCTCACTGCTTTCAGATAGTGCCCAC  150
      | |||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  ACAAGGCAGTCCAGCCATGGCTCGGCTCACTGCCTTCAGATAGTGCCCAC  149

seq1  ACACCAAAGGGGTCTGAGGCCAAATCCCAGGATGGAGGC--GAGAGTCAG  198
      |||||||||||||||||||||||||||||||||||||||  ||||||| |
seq2  ACACCAAAGGGGTCTGAGGCCAAATCCCAGGATGGAGGCAAGAGAGTCGG  199

seq1  GACCGTGATAACCAGTAGAGAAAAACTTCACAATGTCTGCATATGACTAA  248
       || || ||||| |||||||||||||||||||||||||| |||  |||||
seq2  TACGGTAATAACTAGTAGAGAAAAACTTCACAATGTCTGTATACAACTAA  249

seq1  AGAGTC----CCGGCACACCAAGGCACAGGCAGTC  279
       |||||    ||||||| |||||||||||||||||
seq2  GGAGTCCCGGCCGGCACGCCAAGGCACAGGCAGTC  284