BAC Information

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BAC

Clone NameB6Ng01-022B17
Chromosome3 (Build37)
Map Location 91,485,461 - 91,486,308
singlet/doubletsinglet
Overlap genenone
Upstream geneS100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022B17.bB6Ng01-022B17.g
ACCDH854418DH854419
length1,0151,146
definitionDH854418|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B17, 5' end.DH854419|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaacagtattacagctgtgtagatatctatcctctaagttat
tagaatttatttttctattgataaccctgaataattatttattatttttt
gttttatctggacagctcttaacaccaattgtcctgaactcaaaatgata
ttttttatggcttatctaagcaatgttgtcttctcttactccttggcctt
cttcttctctcctgtcttactgctctaatgaactcataaacaggactcct
aaactctgtgtatgtctcatctggcttttaccttctcttttgagaagcct
tttccaaaagtgactagtctgtttttgtatattatttggctttttcccct
cacaaattttaatatttttatttattctgtacatcatgattattatcatt
aatattatcatcattttattattactattattattactattattttattg
tgaaatagattgcttttccagtctaatctatttggagttctacatgctcc
ttatacatttattggcaattctttctttaggttagtgctattttcatcta
taatttagttgaagctgttttctgacccattgaatgggtaatatttatct
tcttctattcctattattcttagaattggtgtttccgttttgctccaaac
ctcctgatattccctaggtcttaacaattcatggcataaattatggcctt
aaacttatcaggatgatattggaatacaaagttatttaaaaagtcttgtc
atccattattcggcggtaagggcatgacttgattgtcatatgaggtaata
ttttcagagatagtacaaataatgcaaacaacaacaacaacaaaaaatac
agtttgctgtacctttcttgatgggactatgctccattctatatatgtgt
gtatgtacttgtatacctggagtttgcagctctacttttttgctcatcca
aagtgatttatgatttctcttctgcagacacattatcttccttattatta
tttttctataaaaaa
gaattctcacctaaggaatactgaatggctgagaaacacctgaaaatatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaaccaccctgagat
ttcatctcacaccagtcaggatggataagatcataaattcatgtgacagc
agatgctggcgaggatgtggagaaagaggaacattcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagattggaggttcctca
gaaaattggacatggtactgaatggcagatcccgcaatacctctcctggg
catatatccagaagatgttccaactagtatgaaagaaacatgctccactt
tgtccatagcagccttatttttaatagccagaagctagaaagtacccaga
tgcccctcaacagaggagtggatacaaaaatatggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctcggcaa
atggttggaattggagggtattatactgagttaggtaacccaatatcaaa
agaactcaaatgatatgtactcactgataagtggatattagccagaaact
tagaatacccaagatataagttacaatttgcaaaacacatgaaactcaag
aagatcgaagaccaaagtgtgaacactttgccccttctttgaattgggaa
caaaacacccatggaaggagttatagagacacagtttgaagctgagacaa
aatgatggaccatctagagactgccatatccagggatccatcccataatc
agcttccaaacgctgacactattgcatatactagcaagatgtgctgacag
gaccctgatatagcagtctctagtgagactatgccagggcctagcaaaca
cataagtggatgctcacagtcagctattgggaaggatcacagggccccca
atggaggagctagagaaataacccaggagctaaaggaatctgcaacctat
tagtggacacttggactaaccataccccggagcctctggacctacctgca
ttggataccaagatggccattaagcctatctcgtagagagcccttgaatt
ggaactctaattctcatcatggatagcagggccaaatgtgagtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91485461_91486308
seq2: B6Ng01-022B17.b_215_1057

seq1  ATGTTGTCTTCTCTTACTCCTTGGCCTTCTTCTTCTATCCTGTCTTACTG  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTTGTCTTCTCTTACTCCTTGGCCTTCTTCTTCTCTCCTGTCTTACTG  50

seq1  CTCTAATGACCTCATAAACAGGACTCCTAAACTCTGTGTATGTCTCATCT  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGAACTCATAAACAGGACTCCTAAACTCTGTGTATGTCTCATCT  100

seq1  GGCTTTTACCTTCTTTTTTGAGAAGCCTTTTGCAAAAGTGACCAGTGTGT  150
      |||||||||||||| |||||||||||||||| |||||||||| ||| |||
seq2  GGCTTTTACCTTCTCTTTTGAGAAGCCTTTTCCAAAAGTGACTAGTCTGT  150

seq1  TTTTGTATATTATTTGTCTTTTTCCCATCACAGCTTTTAATATTTTTCTT  200
      |||||||||||||||| ||||||||| |||||  ||||||||||||| ||
seq2  TTTTGTATATTATTTGGCTTTTTCCCCTCACAAATTTTAATATTTTTATT  200

seq1  TCTTCTGTACATGATGATTATTATTATCATTATTATTATTATCACCAGTT  250
      | |||||||||| |||   ||||||||||||| |||||| ||||    ||
seq2  TATTCTGTACATCATG---ATTATTATCATTAATATTATCATCA----TT  243

seq1  TTATTATTACTATTATTATTACTATTATTTTATTGTGAAATAGATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACTATTATTATTACTATTATTTTATTGTGAAATAGATTGCTT  293

seq1  TTCCAGTCTAATCTATTTAGAGTTCTTTATACTACTTACACATTTATTGG  350
      |||||||||||||||||| |||||||  || || |||| |||||||||||
seq2  TTCCAGTCTAATCTATTTGGAGTTCTACATGCTCCTTATACATTTATTGG  343

seq1  CAATTCTTTCTTTAGATTAGTGAAGTTTTCATTTATACTTTAGTTGAAGC  400
      ||||||||||||||| ||||||   ||||||| |||| ||||||||||||
seq2  CAATTCTTTCTTTAGGTTAGTGCTATTTTCATCTATAATTTAGTTGAAGC  393

seq1  TGTTCTCTGACCCACTGAATGGGTAATATTTATCTTCTTCTAGTCTTATT  450
      |||| ||||||||| ||||||||||||||||||||||||||| || ||||
seq2  TGTTTTCTGACCCATTGAATGGGTAATATTTATCTTCTTCTATTCCTATT  443

seq1  ATTCTTAGAAT---TGTTTCCGTTTTGCTCCAAACCTCCTGATATTCCCT  497
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGAATTGGTGTTTCCGTTTTGCTCCAAACCTCCTGATATTCCCT  493

seq1  ACATCTTAACAATTCATGGCATAAATTATTGCCTTAAACTTACCAGGATG  547
      |  |||||||||||||||||||||||||| |||||||||||| |||||||
seq2  AGGTCTTAACAATTCATGGCATAAATTATGGCCTTAAACTTATCAGGATG  543

seq1  ATATTGGAATACAAAGTTATTTAAAAAGTCTTGTCATCCATTATTCTGCT  597
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  ATATTGGAATACAAAGTTATTTAAAAAGTCTTGTCATCCATTATTCGGCG  593

seq1  ATAAGGGCACACCTTGATTGTCATATGAGTTAATATTTTCAGAAATAGCA  647
       ||||||||   ||||||||||||||||| ||||||||||||| |||| |
seq2  GTAAGGGCATGACTTGATTGTCATATGAGGTAATATTTTCAGAGATAGTA  643

seq1  CAAATAGTGTGAACAA----------AATAAATACAGGTTTCTGTACCTT  687
      |||||| ||  |||||          || |||||||| || |||||||||
seq2  CAAATAATGCAAACAACAACAACAACAAAAAATACAGTTTGCTGTACCTT  693

seq1  TCTTGATGGGACTATGCTCCATTCTATATATGTGTGTATGTACATGCATA  737
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TCTTGATGGGACTATGCTCCATTCTATATATGTGTGTATGTACTTGTATA  743

seq1  CCTGGAGTTTGGAGCACTACTTTTGTGCTTCATCCAGAGTGAGTTAGTAT  787
      ||||||||||| ||| |||||||| ||| ||||||| ||||| ||| |  
seq2  CCTGGAGTTTGCAGCTCTACTTTTTTGC-TCATCCAAAGTGATTTA-TGA  791

seq1  TTTCTCTTCATGCATGACACTTCATCTTCCTTTATTTCTTTTTTTCTTCC  837
      ||||||||| |||| ||||| | ||||||| |||||  | ||||||    
seq2  TTTCTCTTC-TGCA-GACACATTATCTTCC-TTATTATTATTTTTC----  834

seq1  ATTTTAAAAAA  848
        | |||||||
seq2  --TATAAAAAA  843