BAC Information

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BAC

Clone NameB6Ng01-022G09
Chromosome3 (Build37)8 (Build37)
Map Location 40,810,952 - 40,811,96685,390,390 - 85,390,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022G09.bB6Ng01-022G09.g
ACCDH854627DH854628
length1,003457
definitionDH854627|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G09, 5' end.DH854628|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,810,952 - 40,811,966)(85,390,390 - 85,390,813)
sequence
gaattcttgaagatgttgatgagtgcttcaaaatttagattgtgtagcca
tcatatatatgtatatggaataacactatatagtgttattccttgagtgt
ttaagtttaaacatataaaatttatctccaagtatagctacttaaaagaa
aatctaaaatagtttgaatgtgagtcagttaactacaatcttatttcagc
acttcaacatcagctctgccagcatgatggttactgttagccaaaggaca
caaatggccagtgatgggttaactacaagaagagcattaaagggtagggt
gatgagagtccagaatccctgctggcacattccctccatcttgctcttaa
aatgggtaaatagctttaccaattaattaacaaacacagctccctaaact
agtaggctaaactagatctaaaataacactatgatcaaacaaaatctggg
aagtttttatttatagcagatcttaaagaaaatactaaaggaaaaaggac
agataaacatggttctggacaaaactcaggaacatgggaaagagggaaga
gcaagggtaagtgtaactcttaagtgtgtgcagaactgaacgcaaagcca
gggctactattgataaccaaagggctgaaatgtgatcactttatcacagt
gaacccccaagtgaaaatgtcacataaccaattaaagtagctatgctaac
aaatacctagtcccaaactgtacatgtcagagaactcgcccacagttaga
atgactatcacttgcatttttatggacttcatggccacatagaaaaatta
tggagatgaaactagggaaaaccccaataagctttatatcctatttcaca
gctcatgcccctttgcttcctcatcacccaatactgccctctctgatctc
ctttctaaatggtgtacatgccacacctacaactgttatatatgacatca
tagttacatcctatgatggagaactgaggttcctccccacccaacccccg
ccc
agacctgggaattcagtctcaaatttcactctggtgcttatgattgtgac
cagggctggcacaggatatttgtattaaaagctcccaaattcgggccagg
cacgaaggtacgtgagaggcaggtggatctctgtgagttcaaggcttggc
tggtctatatagtgagttcctggccaagcagggctacacagtgagacata
tttttatgaagggaagacatgatatgctgtagccaaatgccccactattc
tgctttctattgctgtgataaacacaacgaccagaagcaacctgaggagg
agaggattcgtttccatctcaatgcccagatcacactccctcattgaggg
aagccgggccagagcgaaaactggaactgaagcaccgaagcggaggacat
ggaagagagctgcttattggctctctctctctctctctctccctctctct
ctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40810952_40811966
seq2: B6Ng01-022G09.b_47_1049

seq1  GAATTCTTGAAGATGTTGATGAGTGCTTCAAAATTTAGATTGTGTAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAGATGTTGATGAGTGCTTCAAAATTTAGATTGTGTAGCCA  50

seq1  TCATATATATGTATATGGAATAACACTATATAGTGTTATTCCTTGAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATGTATATGGAATAACACTATATAGTGTTATTCCTTGAGTGT  100

seq1  TTAAGTTTAAACATATAAAATTTATCTCCAAGTATAGCTACTTAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAAACATATAAAATTTATCTCCAAGTATAGCTACTTAAAAGAA  150

seq1  AATCTAAAATAGTTTGAATGTGAGTCAGTTAACTACAATCTTATTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAATAGTTTGAATGTGAGTCAGTTAACTACAATCTTATTTCAGC  200

seq1  ACTTCAACATCAGCTCTGCCAGCATGATGGTTACTGTTAGCCAAAGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACATCAGCTCTGCCAGCATGATGGTTACTGTTAGCCAAAGGACA  250

seq1  CAAATGGCCAGTGATGGGTTAACTACAAGAAGAGCATTAAAGGGTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCAGTGATGGGTTAACTACAAGAAGAGCATTAAAGGGTAGGGT  300

seq1  GATGAGAGTCCAGAATCCCTGCTGGCACATTCCCTCCATCTTGCTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGTCCAGAATCCCTGCTGGCACATTCCCTCCATCTTGCTCTTAA  350

seq1  AATGGGTAAATAGCTTTACCAATTAATTAACAAACACAGCTCCCTAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTAAATAGCTTTACCAATTAATTAACAAACACAGCTCCCTAAACT  400

seq1  AGTAGGCTAAACTAGATCTAAAATAACACTATGATCAAACAAAATCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTAAACTAGATCTAAAATAACACTATGATCAAACAAAATCTGGG  450

seq1  AAGTTTTTATTTATAGCAGATCTTAAAGAAAATACTAAAGGAAAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTATTTATAGCAGATCTTAAAGAAAATACTAAAGGAAAAAGGAC  500

seq1  AGATAAACATGGTTCTGGACAAAACTCAGGAACATGGGAAAGAGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACATGGTTCTGGACAAAACTCAGGAACATGGGAAAGAGGGAAGA  550

seq1  GCAAGGGTAAGTGTAACTCTTAAGTGTGTGCAGAACTGAACGCAAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTAAGTGTAACTCTTAAGTGTGTGCAGAACTGAACGCAAAGCCA  600

seq1  GGGCTACTATTGATAACCAAAGGGCTGAAATGTGATCACTTTATCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTATTGATAACCAAAGGGCTGAAATGTGATCACTTTATCACAGT  650

seq1  GAACCCCCAAGTGAAAATGTCACATAACCAATTAAAGTAGCTATGCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCCAAGTGAAAATGTCACATAACCAATTAAAGTAGCTATGCTAAC  700

seq1  AAATACCTAGTCCCAAACTGTACATGTCAGAGAACTCGCCCACAGTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAGTCCCAAACTGTACATGTCAGAGAACTCGCCCACAGTTAGA  750

seq1  ATGACTATCACTTGCATTTTTATGGACTTCATGGCCACATAGAAAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATCACTTGCATTTTTATGGACTTCATGGCCACATAGAAAAATTA  800

seq1  TGGAGATGAAACTAGGAAAAACCCCAATAAGCTTTATATCCTATTTCACA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAGATGAAACTAGGGAAAACCCCAATAAGCTTTATATCCTATTTCACA  850

seq1  GCTCATGCCCCTTTGCTTCCTCATCACCCAATACTGCCCTCTCTTGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTCATGCCCCTTTGCTTCCTCATCACCCAATACTGCCCTCTC-TGATCT  899

seq1  CCTTTCTAAATGGTGTACTATGCCCACACCTACAACTGTTTATATATGTA  950
      |||||||||||||||||| ||| ||||||||||||||| ||||||||| |
seq2  CCTTTCTAAATGGTGTAC-ATG-CCACACCTACAACTG-TTATATATG-A  945

seq1  CATCATAAGTTAGCATCCATATGAGGGAGAACATGTAGGTTCCTCCCCAC  1000
      |||||| ||||| ||||| ||||| ||||||| || ||||||||||||||
seq2  CATCAT-AGTTA-CATCC-TATGATGGAGAAC-TG-AGGTTCCTCCCCAC  990

seq1  CCCAACCCCCCGCCC  1015
      ||  | |||||||||
seq2  CC--AACCCCCGCCC  1003

seq1: chr8_85390390_85390813
seq2: B6Ng01-022G09.g_74_532

seq1  TCAGACCTGGGAATTCA--CTTAGGAAACCATATACAGGCTA-GATGTTG  47
      |||||||||||||||||  || |     |  | |   |  || |||  ||
seq2  TCAGACCTGGGAATTCAGTCTCAAATTTCACTCTGGTGCTTATGATTGTG  50

seq1  A-------TGGAATATGGTTATT--TAGT--GAGCT--CAGATT---GCA  81
      |       ||| | | || ||||  || |   ||||  || |||   || 
seq2  ACCAGGGCTGGCACA-GGATATTTGTATTAAAAGCTCCCAAATTCGGGCC  99

seq1  GGGCACCAGGGGACATGGTTGTGGCCTTTTTAATCCAGTCCCTGAGTTTA  131
       ||||| | || || ||   | || |   |  |||   ||  |||||| |
seq2  AGGCACGAAGGTACGTG--AGAGG-CAGGTGGATC---TCTGTGAGTTCA  143

seq1  GAGGAAAATCAAAAGCTAATAT-TTGCCATACTTCTCCATCAATGC-CCT  179
       |||    |     |   ||||  ||   | ||   | | ||  ||  | 
seq2  -AGG--CTTGGCTGGTCTATATAGTGAGTTCCTGGCCAAGCAGGGCTACA  190

seq1  GATTTGAGGAGACAACAGCTTGGGGGAGAGAAGGCTTG----GGTTTAG-  224
       | |    ||||| | |  ||   | || |||| | ||    | | ||| 
seq2  CAGT----GAGAC-ATATTTTTATGAAGGGAAGACATGATATGCTGTAGC  235

seq1  -AATTTTGGAGCCTACATATAGTGTTTATCATCTGCTGTGATAGAGCCCT  273
       || |     |||    |||  || || ||   |||||||||| |  |  
seq2  CAAAT-----GCCCCACTATTCTGCTT-TCTATTGCTGTGATAAA--CAC  277

seq1  AATTACCAGACAGAAACAAATTCAACTAAATAAATTATTTCTTCCATCCT  323
      ||  |||||| || |||     |     |  | |  |||  ||   ||| 
seq2  AACGACCAGA-AGCAAC-----CTGAGGAGGAGAGGATTCGTT---TCCA  318

seq1  TCTCTCTTC---TTTCTCTCTCTCTCTCT---------------------  349
      ||||  | |     || | ||| |||  |                     
seq2  TCTCAATGCCCAGATCACACTCCCTCATTGAGGGAAGCCGGGCCAGAGCG  368

seq1  ----CTCTCTCTCTCTCTC-----------------------TCT-CTCT  371
          ||    ||    | |                        || ||  
seq2  AAAACTGGAACTGAAGCACCGAAGCGGAGGACATGGAAGAGAGCTGCTTA  418

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCCCCTCTCTTCTACCACTCCCTCTCT  421
       |  |||||||||||||||||||| ||||||||           ||||||
seq2  TTGGCTCTCTCTCTCTCTCTCTCT-CCCTCTCT-----------CTCTCT  456

seq1  CTC  424
      |||
seq2  CTC  459