BAC Information

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BAC

Clone NameB6Ng01-025D06
Chromosome3 (Build37)13 (Build37)
Map Location 41,059,046 - 41,059,73713,106,606 - 13,107,478
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025D06.bB6Ng01-025D06.g
ACCDH856623DH856624
length1,0151,074
definitionDH856623|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D06, 5' end.DH856624|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,046 - 41,059,737)(13,106,606 - 13,107,478)
sequence
gaattctttttttagctctgagcatcttttttaatggggttatttgtttt
actggagttcgccttcttgagttcttcatatatattggatattagtcccc
tatctgatttagaataggtaaattttctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttgcagaagctttgcaattttat
gagatcccatttgtgcattcttgatcttatagcacaagccattgctgttc
tcttcaggaattgtccccctgtacccatatctttgaggcttttccctact
ttctcctctataaggctcagtgtctctggttttatgtggagttccttaat
tcacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatggtgattgccggttgtgccagcaccattttttgaaaatg
ctgtcttttttccactggatgttttttgctcccttgtcaaagaccaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattgcattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaagtcaggcatggtgtttgcaccggaggttctttt
acccttgagcagagtttttgctatcctaggttttttgttattccagatga
atttgcagattgccctttctaattcattaaagaattgtgttggaattttg
atggggattgcattgaatctgtagattgtttttggcaagatagacatttt
tactatattgatcctgccaatccacgagcatggtagatctttccatcttc
tgatatctttaatttctttcttcagagatttgaagttcttatcatacaga
tctttcacttccttagttagagtcatgccaagtatttatattatttgtga
ctattgagaaggtgttgtttccctatactttcttagctgttatcctttga
gtttttttcggacta
gaattccagggcaggtgaccatcttaatctgttgggtcaacctctataca
aattccagaaccattactgaggtatggggctggaaacagttgctagggaa
gtcaaaactgtgttgacccattgcccttgcctcaggccaagtggctctga
ctagctgccagaagcctgcctggggattttaccagtaactgactcacctg
ggttttcctggacttgtccagttctaggaaacggatttagacctagtctc
cttcactgcccatttgaagcctgtcatggaatcagcctatttcattcctc
tcaaacagggctcacaaaattaactgattgagtttcatgggaactcacag
agatcagggagcctgtgggaacttgacctatagcctctacatctatttta
tggtgtagtattttgatattcttgtggaaattctaacagagggaacacag
gttgcctgtgacacttttgcctacttgtgggactctttccacctactcac
ttgccttgtccaacctggttgtgatggcacgtgcctggtcttattgtaat
ttttcatgccatatttaattgtacctggaagacctgctcttttctgaagg
aaggcaggagtggagggaatctgggtgagagaagaggtaaacagaaaaga
ctgaaaggagatgaggaagggggaaatttcagttgagatgtaatatataa
aagaagaatttaaaaaaatgttttaaaaatcaaggaattgatttttttta
aatttagaattgaattaaaggaaaacacaacaccccaaacctatggggta
caataaatgcagttctcagaagcaagttcatagcactaagtgcctacata
atcaaacaaacaaaactggagaatcttgtatttgttatttcatgagactt
ggttggaattctgatgggtactgcattatctgtagattgcttccatcaaa
ttggcatttttactacatatctgcaaccatgagcatgggagatatttcat
cttctgagatcatcctcgatttctgtctttagagacttgagtgtcataca
atttttcacttgcttgtttagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059046_41059737
seq2: B6Ng01-025D06.b_46_737 (reverse)

seq1  GAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAA  50
      ||||||||||||||||||||||||||||||||| ||||||| ||| ||||
seq2  GAATAACAAAAAACCTAGGATAGCAAAAACTCTGCTCAAGGGTAAAAGAA  50

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  100
      |||| |||| || ||||||||||||| ||||||| |||||||||||||||
seq2  CCTCCGGTGCAAACACCATGCCTGACTTAAAGCTGTACTACAGAGCAATT  100

seq1  GTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATG  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATG  150

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  200
       ||||||||||||||| |||||| ||| ||||||||||||||||||||| 
seq2  CAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGG  200

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  250
      |||| ||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TCTTTGACAAGGGAGCAAAAAACATCCAGTGGAAAAAAGACAGCATTTTC  250

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  300
      || |||||||||||||||||| ||   | | ||||||||||||||| |||
seq2  AAAAAATGGTGCTGGCACAACCGGCAATCACCATGTAGAAGAATGCAAAT  300

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  350
      ||||||| |||||||||||||||||||||||||||||||||| || ||||
seq2  TGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGAATTAAGG  350

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  400
      ||| |||||||||||||||||||||||  ||||||||||||||||| |||
seq2  AACTCCACATAAAACCAGAGACACTGAGCCTTATAGAGGAGAAAGTAGGG  400

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  450
      ||||||||  |||||||||  ||||||| | |||||||| | ||||||||
seq2  AAAAGCCTCAAAGATATGGGTACAGGGGGACAATTCCTGAAGAGAACAGC  450

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  500
      ||||||||||||| ||||||  |||||  |||||||||| ||||| ||| 
seq2  AATGGCTTGTGCTATAAGATCAAGAATGCACAAATGGGATCTCATAAAAT  500

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  549
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  TGCAAAGCTTCTGCAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCA  550

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  599
      ||||||||||||||||| |  ||||||||| |||||||||||||||||||
seq2  CCAACAGATTGGGAAAGAAAATTTACCTATTCTAAATCAGATAGGGGACT  600

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  649
      |||||||||||||||| ||||||||||||||| | | ||||| ||| |||
seq2  AATATCCAATATATATGAAGAACTCAAGAAGGCGAACTCCAGTAAAACAA  650

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  692
      ||||||||||||||||| |  ||||||||||||| ||||||||
seq2  ATAACCCCATTAAAAAA-GATGCTCAGAGCTAAAAAAAGAATT  692

seq1: chr13_13106606_13107478
seq2: B6Ng01-025D06.g_282_1139

seq1  TCCAGTTCTAGGAAATGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTAGGAAACGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50

seq1  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100

seq1  AAATTAACTGATTGAGTTTCGTGGGAACTCACAGAGATCAGGGAGCCTGT  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTAACTGATTGAGTTTCATGGGAACTCACAGAGATCAGGGAGCCTGT  150

seq1  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200

seq1  TATTCTTGTGGAAATCCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTGGAAATTCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250

seq1  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300

seq1  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350

seq1  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400

seq1  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450

seq1  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATTTAAAAA  500

seq1  AATGTTTTAAAAATCAAGGAATTGATTTTTTTTTTAAATTTAGAATTGAA  550
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  AATGTTTTAAAAATCAAGGAATTGA--TTTTTTTTAAATTTAGAATTGAA  548

seq1  TTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGTT  598

seq1  CTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATAATCAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATAATCAAACAAACAAA  648

seq1  ACTGGAAGAATCTTGTATTTGTTATTTCATGAAGAACTTGTTTGGAATTC  700
      ||||| ||||||||||||||||||||||||||   ||||| |||||||||
seq2  ACTGG-AGAATCTTGTATTTGTTATTTCATGA--GACTTGGTTGGAATTC  695

seq1  TGATGGGTACTGCATTAATCTGTAGATTGCTTCCATCAAAATTGGCATTT  750
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TGATGGGTACTGCATT-ATCTGTAGATTGCTTCCATC-AAATTGGCATTT  743

seq1  TTACTACATTAATCCTGCCAAACCATGAGCATGGGAGATATTTCCATCTT  800
      |||||||||  || ||||  ||||||||||||||||||||||| ||||||
seq2  TTACTACAT--AT-CTGC--AACCATGAGCATGGGAGATATTT-CATCTT  787

seq1  CTGAGATCATCCTCGATTTCTGTCTTTAGAGACTTGAAGTGTCATACAAA  850
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CTGAGATCATCCTCGATTTCTGTCTTTAGAGACTTG-AGTGTCATAC-AA  835

seq1  TCTTTCACTTGCTTGTTTAGAGT  873
      | |||||||||||||||||||||
seq2  TTTTTCACTTGCTTGTTTAGAGT  858