BAC Information

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BAC

Clone NameB6Ng01-027B17
Chromosome3 (Build37)
Map Location 82,687,885 - 82,813,522
singlet/doubletdoublet
Overlap geneLrat, Fgg
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285
Downstream geneFga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B17.bB6Ng01-027B17.g
ACCDH857945DH857946
length1,0301,048
definitionDH857945|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B17, 5' end.DH857946|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,687,885 - 82,688,925)(82,812,466 - 82,813,522)
sequence
gaattcactgagtagagcagaccagtcttgaatgtgcagagacccaccgc
cctctgcttcctgagtgctgtgattaaagccgtgtggtactccacttggc
tctggttatgagtttgctgagtgtgttttctgtctgtagcttgtatgtct
ctcccttctgtgcccgtgaattgcaagctttgtctgttaattgtgcactc
taaatctttcatgtcttgcttatttctactcctcattagttcatctcttt
tgtctgactacactaatttctctttcctttcttaacgccctgtgggtggg
gccttctgggagttttttttatttaatttgctgagcttttcattttcaga
ttttcaatttagaagttactgtccctttttactttgttaaactttcctat
aattacttcttttcatttctttgtctagaatttcatttagtctcactaga
aaatttaactgtggagtcactcattgttgaatgagtattattgtcttcat
tttttttatgtcctgttttcttcatttgggacttttatacctgaaattaa
gtcatttgttgtatttttagttactctgtaattacctacctgactgtttt
gacaaaatgtctccaaatagcatcctatgtaaggaagcaagggtttatct
tcctttacagacattgaggcaacagcccatcatggcagaagacatgacag
cagaagccaggtggctgttctcattgtgtcctcggtcaagacttggagtt
gtgagtgtgctcagcttaccttctctgtttagtcagccctgacacagagc
aacatttccagtagaccatcctacctcagttaatctaagctagataatct
ctcacagacatgcccatacatttgtttccacagtgattctctgtcttctc
aagctggcaatcaagttaaccacacatatcatggtccttcactagagcac
ttgactgtttaagtggggttcagttgcactgagggtggtttatgatgggc
cgggaaagactcagtaaggaacctcactct
gaattctggcttggtcattcttcacatggttgcttataaatactgacatg
acacaacagataaacctgaacaatgcacagaccaccaggtctgcttttga
agtaaagcagtgggacacatcattggagcaccttgtttctctgtcttaga
tattttctcacaagagttttcttatgctttagtgatgagcaaatgagaat
gctaattgcagcagcaatacgcactgccttctgactgcagaaagaggaga
ggcacgttggaggtcacttccccagctaccgtctggctgggtttccaatg
gtgctgggagtccagtttgggggagaattgggaaaggagttaaaactata
cctgcgatgccatgcccagagtccctgggaagctagatgtgaggacaggg
gacacggaataattccaggcccatgacctatgatcaagtggctccaagac
acttcccttctacttcacttttgacaagatttttctatagcagtcaagac
ccttcttctgtctgttctctgatttactaatgttgacttggtgacatgtt
tgtgaagaggatttccacacctcaattcccatatatttgattttatattg
taagggggctgggggacattcaagtaaatagagccagaatggcattcaaa
ggcatctacaataacctttctccaatgcgattattattttaaaattacag
gcccgtgcaactcatttttcactaaagaactcccatctccactgggagat
ttgatactataaatgaaaactaaattccaaggtcactttctatgaaatgt
ggaacattaaagaaaagttccaggtgccttgaggagcacatgaaaaccca
gacacataccgaatgcttgtctcgtgggttaacagcagcgcttcgtattt
cacaatttcttctaccatcttcctagactctgagtggcactgtctatcat
acctgtacagggtcaaagacaggaaatcccttaagcaatagtacacggaa
agcgaggaggggatccccggggggttcctctcccctggctttgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82687885_82688925
seq2: B6Ng01-027B17.b_43_1072

seq1  GAATTCACTGAGTAGAGCAGACCAGTCTTGAATGTGCAGAGACCCACCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTAGAGCAGACCAGTCTTGAATGTGCAGAGACCCACCGC  50

seq1  CCTCTGCTTCCTGAGTGCTGTGATTAAAGCCGTGTGGTACTCCACTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCTGAGTGCTGTGATTAAAGCCGTGTGGTACTCCACTTGGC  100

seq1  TCTGGTTATGAGTTTGCTGAGTGTGTTTTCTGTCTGTAGCTTGTATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTATGAGTTTGCTGAGTGTGTTTTCTGTCTGTAGCTTGTATGTCT  150

seq1  CTCCCTTCTGTGCCCGTGAATTGCAAGCTTTGTCTGTTAATTGTGCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTGTGCCCGTGAATTGCAAGCTTTGTCTGTTAATTGTGCACTC  200

seq1  TAAATCTTTCATGTCTTGCTTATTTCTACTCCTCATTAGTTCATCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTCATGTCTTGCTTATTTCTACTCCTCATTAGTTCATCTCTTT  250

seq1  TGTCTGACTACACTAATTTCTCTTTCCTTTCTTAACGCCCTGTGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACTACACTAATTTCTCTTTCCTTTCTTAACGCCCTGTGGGTGGG  300

seq1  GCCTTCTGGGAGTTTTTTTTATTTAATTTGCTGAGCTTTTCATTTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGGGAGTTTTTTTTATTTAATTTGCTGAGCTTTTCATTTTCAGA  350

seq1  TTTTCAATTTAGAAGTTACTGTCCCTTTTTACTTTGTTAAACTTTCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTTAGAAGTTACTGTCCCTTTTTACTTTGTTAAACTTTCCTAT  400

seq1  AATTACTTCTTTTCATTTCTTTGTCTAGAATTTCATTTAGTCTCACTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCTTTTCATTTCTTTGTCTAGAATTTCATTTAGTCTCACTAGA  450

seq1  AAATTTAACTGTGGAGTCACTCATTGTTGAATGAGTATTATTGTCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACTGTGGAGTCACTCATTGTTGAATGAGTATTATTGTCTTCAT  500

seq1  TTTTTTTATGTCCTGTTTTCTTCATTTGGGACTTTTATACCTGAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGTCCTGTTTTCTTCATTTGGGACTTTTATACCTGAAATTAA  550

seq1  GTCATTTGTTGTATTTTTAGTTACTCTGTAATTACCTACCTGACTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGTTGTATTTTTAGTTACTCTGTAATTACCTACCTGACTGTTTT  600

seq1  GACAAAATGTCTCCAAATAGCATCCTATGTAAGGAAGCAAGGGTTTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGTCTCCAAATAGCATCCTATGTAAGGAAGCAAGGGTTTATCT  650

seq1  TCCTTTACAGACATTGAGGCAACAGCCCATCATGGCAGAAGACATGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACAGACATTGAGGCAACAGCCCATCATGGCAGAAGACATGACAG  700

seq1  CAGAAGCCAGGTGGCTGTTCTCATTGTGTCCTCGGTCAAGACTTGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGGTGGCTGTTCTCATTGTGTCCTCGGTCAAGACTTGGAGTT  750

seq1  GTGAGTGTGCTCAGCTTACCTTCTCTGTTTAGTCAGCCCTGACACAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGCTCAGCTTACCTTCTCTGTTTAGTCAGCCCTGACACAGAGC  800

seq1  AACATTTCCAGTAGACCATCCTACCTCAGTTAATCTAAGCTAGATAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCAGTAGACCATCCTACCTCAGTTAATCTAAGCTAGATAATCT  850

seq1  CTCACAGACATGCCCATACATTTGTTTCCACAGTGATTCTCTGTCTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACATGCCCATACATTTGTTTCCACAGTGATTCTCTGTCTTCTC  900

seq1  AAGCTGGCAATCAAGGTTAACCACAACATATCATGGTCCTTCAACTAGAG  950
      |||||||||||||| ||||||||| ||||||||||||||||| |||||||
seq2  AAGCTGGCAATCAA-GTTAACCAC-ACATATCATGGTCCTTC-ACTAGAG  947

seq1  CACTTGTACTGTTTAAGTGGGGTTCAGTTGTCATCTGAGGGGTGGTTTAT  1000
      |||||| ||||||||||||||||||||||| || |||| |||||||||||
seq2  CACTTG-ACTGTTTAAGTGGGGTTCAGTTG-CA-CTGA-GGGTGGTTTAT  993

seq1  GATGGGCCGGGGATAGAACTCAGTAGAGGAACCCTCACTCT  1041
      |||||||| |||| || |||||||| ||||| |||||||||
seq2  GATGGGCC-GGGAAAG-ACTCAGTA-AGGAA-CCTCACTCT  1030

seq1: chr3_82812466_82813522
seq2: B6Ng01-027B17.g_68_1115 (reverse)

seq1  ACCCCCAAAGCCAGGTGAGAGGAAACCCCACCGAGGAGTCACCTCCTCTG  50
      ||||||||||||||| ||||||||  ||| ||| ||| || ||||||| |
seq2  ACCCCCAAAGCCAGGGGAGAGGAA--CCCCCCGGGGA-TCCCCTCCTC-G  46

seq1  CTTTCCGTTGTACTATTTGCTTAAGGGATTTTCCTGTCTCTGACCCTGTT  100
      ||||||| ||||||| |||||||||||| |||||||||| |||||||| |
seq2  CTTTCCG-TGTACTA-TTGCTTAAGGGA-TTTCCTGTCTTTGACCCTG-T  92

seq1  ACAGGTATGATAGACAGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGA  150
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  ACAGGTATGATAGACAGTGCCACTCAG-AGTCTAGGAAGATGGTAGAAGA  141

seq1  AATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCGGT  191

seq1  ATGTGTCTGGGTTTTCATGTGCTCCTCAAGGCACCTGGAACTTTTCCTTA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTGTCTGGGTTTTCATGTGCTCCTCAAGGCACCTGGAACTTTTCTTTA  241

seq1  ATGTTCCACATTTCATAGAAAGTGACCTTGGAATTTAGTTTTCATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCACATTTCATAGAAAGTGACCTTGGAATTTAGTTTTCATTTATA  291

seq1  GTATCAAATCTCCCAGTGGAGATGGGAGTTCTTTAGTGAAAAATGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAATCTCCCAGTGGAGATGGGAGTTCTTTAGTGAAAAATGAGTTG  341

seq1  CACGGGCCTGTAATTTTAAAATAATAATCGCATTGGAGAAAGGTTATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCCTGTAATTTTAAAATAATAATCGCATTGGAGAAAGGTTATTGT  391

seq1  AGATGCCTTTGAATGCCATTCTGGCTCTATTTACTTGAATGTCCCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTTTGAATGCCATTCTGGCTCTATTTACTTGAATGTCCCCCAGC  441

seq1  CCCCTTACAATATAAAATCAAATATATGGGAATTGAGGTGTGGAAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTACAATATAAAATCAAATATATGGGAATTGAGGTGTGGAAATCCT  491

seq1  CTTCACAAACATGTCACCAAGTCAACATTAGTAAATCAGAGAACAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAACATGTCACCAAGTCAACATTAGTAAATCAGAGAACAGACAG  541

seq1  AAGAAGGGTCTTGACTGCTATAGAAAAATCTTGTCAAAAGTGAAGTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGTCTTGACTGCTATAGAAAAATCTTGTCAAAAGTGAAGTAGAA  591

seq1  GGGAAGTGTCTTGGAGCCACTTGATCATAGGTCATGGGCCTGGAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGTCTTGGAGCCACTTGATCATAGGTCATGGGCCTGGAATTATT  641

seq1  CCGTGTCCCCTGTCCTCACATCTAGCTTCCCAGGGACTCTGGGCATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCCCCTGTCCTCACATCTAGCTTCCCAGGGACTCTGGGCATGGCA  691

seq1  TCGCAGGTATAGTTTTAACTCCTTTCCCAATTCTCCCCCAAACTGGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGTATAGTTTTAACTCCTTTCCCAATTCTCCCCCAAACTGGACTC  741

seq1  CCAGCACCATTGGAAACCCAGCCAGACGGTAGCTGGGGAAGTGACCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCATTGGAAACCCAGCCAGACGGTAGCTGGGGAAGTGACCTCCA  791

seq1  ACGTGCCTCTCCTCTTTCTGCAGTCAGAAGGCAGTGCGTATTGCTGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCTCTCCTCTTTCTGCAGTCAGAAGGCAGTGCGTATTGCTGCTGC  841

seq1  AATTAGCATTCTCATTTGCTCATCACTAAAGCATAAGAAAACTCTTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCATTCTCATTTGCTCATCACTAAAGCATAAGAAAACTCTTGTGA  891

seq1  GAAAATATCTAAGACAGAGAAACAAGGTGCTCCAATGATGTGTCCCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTAAGACAGAGAAACAAGGTGCTCCAATGATGTGTCCCACTG  941

seq1  CTTTACTTCAAAAGCAGACCTGGTGGTCTGTGCATTGTTCAGGTTTATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCAAAAGCAGACCTGGTGGTCTGTGCATTGTTCAGGTTTATCT  991

seq1  GTTGTGTCATGTCAGTATTTATAAGCAACCATGTGAAGAATGACCAAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCATGTCAGTATTTATAAGCAACCATGTGAAGAATGACCAAGCC  1041

seq1  AGAATTC  1057
      |||||||
seq2  AGAATTC  1048