BAC Information

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BAC

Clone NameB6Ng01-028G09
Chromosome3 (Build37)
Map Location 125,454,424 - 125,612,882
singlet/doubletdoublet
Overlap geneUgt8a
Upstream geneLOC668820, Ndst4
Downstream geneArsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G09.bB6Ng01-028G09.g
ACCDH858888DH858889
length1,180918
definitionDH858888|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G09, 5' end.DH858889|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,611,658 - 125,612,882)(125,454,424 - 125,455,340)
sequence
gaattcacctatccaccaaagacaggaaggaaggaattgatagaattgaa
actaggaagaatagctttagatcctttttcatagctcaggtctgctttct
aaattgtagactaatgcatatcctgcactttcagctcatgttttaacaaa
cagaatagagcagttttgggcttgtgaaaaatcagtacctccaaggccta
ccaacctactttttggctgtgtatgaggaatattttatactaagttccca
gatactatttgacaatattgtaccaaacagaaaattgcaaaacatgaaat
tttcagtaggtgatggtccattgttttaatgctgttgttgccatgtcttc
aactttattagtgcaaaaacagcagttatcacattatgtgtgttagtaga
tgatgaccacccatggccatacttaatcttaggggagccatggaattaca
gggtaaagtgtaaatttctctggctttattttcattcagtctatctagta
acctatatcaattttcttactaaagtagaaggaaaaaaaaacccagtaaa
tgagattcattgtccttaggctatccagaagtgacttcataacgagcaga
aatgacaattttctagaataactttaagtatgggagagtactggcatggt
gcttcaggcagggtactagattctttagcttctcaggcatgatctttgtt
ttttaaggttcctctctgctggctccacacatgcccatttcccccctttt
gtgcctctcagacctgagaaagctgaggtaaactttatgcacattaatga
tgtagataggaatcctaccagattctctattatatttaaactgattattt
tagtccagaaaccttagaaacagtaagtatattccttttactaagattaa
ggttccagactcattagccacctcacatttcattatgaattcttgcattc
atgcaagaatgtgtatttgtactcttatattctcattaactctttttttt
cattttaattaatcttctatcttattgttattaattttttttcatttttt
atagggattagctcattacattcaatgctatacaaagtctccttaccacc
accccctcccttccacccactctcccttgggcttggcgttcctgtccggc
aacgtttcgtgtcaatggcctctcttccag
gaattcctacgtgtgcagggcagccaaggtggagagtgtgtctacacaag
gtttctttgggagcttgattaattacacttctaagacccattaggagcag
gaggactttgtgtttgccttgctggatatggtgtttgtgttattgccttg
tttgtttgtttgtttgtttttaattgtctaggagtacaaaattaagagac
tgtacttcccaggtattagaattctttaaaagagtgtaagtaccattata
attggtctgaatgggctttacgttataatcatgagcagagagggacaaga
agttgaagattatggcataaaactgaagtgtatgacacggtgtggaggtg
taatgatagtgtgattgtcaatttgattggattagtaaatgtaggaagtg
agtgttcccattccctgcgtggaattatgaactgtttaaacggagaaagg
gagatgtttcctaattgtgaacacaatgcgactaactgctttaaagtcct
gccgtcattgactgtccactaggataaaatgtaaccttgaactttgaacc
aaaacaaactctctcttccttaatttttcctggccctgttattttatcac
aagaattggaaaattagaacaccctgtcattcatgtaattaaacaccaaa
taaaataatttctatgtattaagaaaagtattaaagtacaattttagcca
tgacttccagtaatgagataacaaagttcctggacgtatggtccttgtta
actaacagtaatggttttaagatcttgcaataacagtaatttatatgaaa
aaaatccattttgacatctatactcttaaagtgagcaaaatatatttact
ttcatctgctattaaaatatatttctaaaataactgttcagacaaacaaa
tacatgtacgatataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125611658_125612882
seq2: B6Ng01-028G09.b_43_1222 (reverse)

seq1  CTGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAG  50
      |||| |||||||| ||||| |||||| | || |||      |||| ||| 
seq2  CTGG-AAGAGAGG-CCATT-GACACG-AAACGTTG------CCGG-ACA-  38

seq1  GGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGT  100
       ||||||||| | ||||   ||| ||||||||||  | ||||  ||||||
seq2  -GGAACGCCAAGCCCAA---GGGAGAGTGGGTGG--AAGGGA--GGGGGT  80

seq1  GGGTGGGTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTA  150
      ||   ||||| || ||||||  |||||||||||  ||||| |||||||| 
seq2  GG--TGGTAA-GGAGACTTT--GTATAGCATTG--AATGT-AATGAGCT-  121

seq1  AATACCTAATAAAAAAAAATGAAAAAAAAATATAAATAAACAAATAAGAA  200
      ||| |||    | |||||||||||||||   || |||||   |||||| |
seq2  AATCCCT----ATAAAAAATGAAAAAAA---ATTAATAA--CAATAAG-A  161

seq1  TAGAAGATTAAATTAAAAATGAAAAAAAAAAGAGTTAATGAGAATATAAA  250
      |||||||||||  | ||||||  |||||||||||||||||||||||| ||
seq2  TAGAAGATTAA--TTAAAATG--AAAAAAAAGAGTTAATGAGAATAT-AA  206

seq1  GAGTACAAATACACATTCTTGCATGAATGCAAGAATTCATAATGTAAATG  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGTACAAATACACATTCTTGCATGAATGCAAGAATTCATAATG-AAATG  255

seq1  TGAGGTGGCTAATGAGTCTGGAACCTTAATCTTAGTAAAAGGAATATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGCTAATGAGTCTGGAACCTTAATCTTAGTAAAAGGAATATACT  305

seq1  TACTGTTTCTAAGGTTTCTGGACTAAAATAATCAGTTTAAATATAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTCTAAGGTTTCTGGACTAAAATAATCAGTTTAAATATAATAGA  355

seq1  GAATCTGGTAGGATTCCTATCTACATCATTAATGTGCATAAAGTTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGTAGGATTCCTATCTACATCATTAATGTGCATAAAGTTTACCT  405

seq1  CAGCTTTCTCAGGTCTGAGAGGCACAAAAGGGGGGAAATGGGCATGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTCAGGTCTGAGAGGCACAAAAGGGGGGAAATGGGCATGTGTG  455

seq1  GAGCCAGCAGAGAGGAACCTTAAAAAACAAAGATCATGCCTGAGAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCAGAGAGGAACCTTAAAAAACAAAGATCATGCCTGAGAAGCTA  505

seq1  AAGAATCTAGTACCCTGCCTGAAGCACCATGCCAGTACTCTCCCATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTAGTACCCTGCCTGAAGCACCATGCCAGTACTCTCCCATACTT  555

seq1  AAAGTTATTCTAGAAAATTGTCATTTCTGCTCGTTATGAAGTCACTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTCTAGAAAATTGTCATTTCTGCTCGTTATGAAGTCACTTCTG  605

seq1  GATAGCCTAAGGACAATGAATCTCATTTACTGGGTTTTTTTTTCCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTAAGGACAATGAATCTCATTTACTGGGTTTTTTTTTCCTTCTA  655

seq1  CTTTAGTAAGAAAATTGATATAGGTTACTAGATAGACTGAATGAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTAAGAAAATTGATATAGGTTACTAGATAGACTGAATGAAAATAA  705

seq1  AGCCAGAGAAATTTACACTTTACCCTGTAATTCCATGGCTCCCCTAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGAAATTTACACTTTACCCTGTAATTCCATGGCTCCCCTAAGAT  755

seq1  TAAGTATGGCCATGGGTGGTCATCATCTACTAACACACATAATGTGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGGCCATGGGTGGTCATCATCTACTAACACACATAATGTGATAA  805

seq1  CTGCTGTTTTTGCACTAATAAAGTTGAAGACATGGCAACAACAGCATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTTTGCACTAATAAAGTTGAAGACATGGCAACAACAGCATTAA  855

seq1  AACAATGGACCATCACCTACTGAAAATTTCATGTTTTGCAATTTTCTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGACCATCACCTACTGAAAATTTCATGTTTTGCAATTTTCTGTT  905

seq1  TGGTACAATATTGTCAAATAGTATCTGGGAACTTAGTATAAAATATTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAATATTGTCAAATAGTATCTGGGAACTTAGTATAAAATATTCCT  955

seq1  CATACACAGCCAAAAAGTAGGTTGGTAGGCCTTGGAGGTACTGATTTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGCCAAAAAGTAGGTTGGTAGGCCTTGGAGGTACTGATTTTTC  1005

seq1  ACAAGCCCAAAACTGCTCTATTCTGTTTGTTAAAACATGAGCTGAAAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCAAAACTGCTCTATTCTGTTTGTTAAAACATGAGCTGAAAGTG  1055

seq1  CAGGATATGCATTAGTCTACAATTTAGAAAGCAGACCTGAGCTATGAAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGCATTAGTCTACAATTTAGAAAGCAGACCTGAGCTATGAAAA  1105

seq1  AGGATCTAAAGCTATTCTTCCTAGTTTCAATTCTATCAATTCCTTCCTTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAAAGCTATTCTTCCTAGTTTCAATTCTATCAATTCCTTCCTTC  1155

seq1  CTGTCTTTGGTGGATAGGTGAATTC  1225
      |||||||||||||||||||||||||
seq2  CTGTCTTTGGTGGATAGGTGAATTC  1180

seq1: chr3_125454424_125455340
seq2: B6Ng01-028G09.g_64_981

seq1  GAATTCCTACGTGTGCAGGGCAGCCAAGGTGGAGAGTGTGTCTACACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACGTGTGCAGGGCAGCCAAGGTGGAGAGTGTGTCTACACAAG  50

seq1  GTTTCTTTGGGAGCTTGATTAATTACACTTCTAAGACCCATTAGGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGGAGCTTGATTAATTACACTTCTAAGACCCATTAGGAGCAG  100

seq1  GAGGACTTTGTGTTTGCCTTGCTGGATATGGTGTTTGTGTTATTGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTTGTGTTTGCCTTGCTGGATATGGTGTTTGTGTTATTGCCTTG  150

seq1  TTTGTTTGTTTGTTTGTTTTTAATTGTCTAGGAGTACAAAATTAAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTTTAATTGTCTAGGAGTACAAAATTAAGAGAC  200

seq1  TGTACTTCCCAGGTATTAGAATTCTTTAAAAGAGTGTAAGTACCATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCCCAGGTATTAGAATTCTTTAAAAGAGTGTAAGTACCATTATA  250

seq1  ATTGGTCTGAATGGGCTTTACGTTATAATCATGAGCAGAGAGGGACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTGAATGGGCTTTACGTTATAATCATGAGCAGAGAGGGACAAGA  300

seq1  AGTTGAAGATTATGGCATAAAACTGAAGTGTATGACACGGTGTGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGATTATGGCATAAAACTGAAGTGTATGACACGGTGTGGAGGTG  350

seq1  TAATGATAGTGTGATTGTCAATTTGATTGGATTAGTAAATGTAGGAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGTGTGATTGTCAATTTGATTGGATTAGTAAATGTAGGAAGTG  400

seq1  AGTGTTCCCATTCCCTGCGTGGAATTATGAACTGTTTAAACGGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCCATTCCCTGCGTGGAATTATGAACTGTTTAAACGGAGAAAGG  450

seq1  GAGATGTTTCCTAATTGTGAACACAATGCGACTAACTGCTTTAAAGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTCCTAATTGTGAACACAATGCGACTAACTGCTTTAAAGTCCT  500

seq1  GCCGTCATTGACTGTCCACTAGGATAAAATGTAACCTTGAACTTTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCATTGACTGTCCACTAGGATAAAATGTAACCTTGAACTTTGAACC  550

seq1  AAAACAAACTCTCTCTTCCTTAATTTTTCCTGGCCCTGTTATTTTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACTCTCTCTTCCTTAATTTTTCCTGGCCCTGTTATTTTATCAC  600

seq1  AAGAATTGGAAAATTAGAACACCCTGTCATTCATGTAATTAAACACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGAAAATTAGAACACCCTGTCATTCATGTAATTAAACACCAAA  650

seq1  TAAAATAATTTCTATGTATTAAGAAAAGTATTAAAGTACAA-TTTAGCCA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAATAATTTCTATGTATTAAGAAAAGTATTAAAGTACAATTTTAGCCA  700

seq1  TGACTTCCAGTAATGAGATAACAAAGTTCCTGGACGTATGGTCCTTGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCAGTAATGAGATAACAAAGTTCCTGGACGTATGGTCCTTGTTA  750

seq1  ACTAACAGTAATGGTTTTAAGATCTTGCAATAACAGTAATTTATATG-AA  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTAACAGTAATGGTTTTAAGATCTTGCAATAACAGTAATTTATATGAAA  800

seq1  AAAATCCATTTTGACATCTATACTCTTAAAGTGAGCAAAATATATTTAC-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATCCATTTTGACATCTATACTCTTAAAGTGAGCAAAATATATTTACT  850

seq1  TTCATCTGCTATTAAAATATATTTCTAAGAATAACTGTTCAGACAAACAA  897
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TTCATCTGCTATTAAAATATATTTCTAA-AATAACTGTTCAGACAAAC-A  898

seq1  AATACATGTACGATATAAAT  917
      ||||||||||||||||||||
seq2  AATACATGTACGATATAAAT  918