BAC Information

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BAC

Clone NameB6Ng01-028H24
Chromosome3 (Build37)
Map Location 24,730,931 - 24,824,467
singlet/doubletdoublet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028H24.bB6Ng01-028H24.g
ACCDH858960DH858961
length1,0791,116
definitionDH858960|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H24, 5' end.DH858961|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,730,931 - 24,732,023)(24,823,341 - 24,824,467)
sequence
gaattctttgatggacctaaatagagggaagattatgggcaggatctggg
aagagcaggttggaaaactgatagactatattgtgtgaatgtttttttca
ataaaaataaggaagtaatatgtatgcatgattccacacgtacacacatg
tatacacacatatgacacacacacacatgctagaaataaaaataaaatat
tttaaatgaaaattaatcttttgtgttatgctcaatgagaaatgattaat
gtctaacatttgatgtcctccacagagcacatggtaaaactaaggtaacc
ttagcaaacaatatatggttctaaaagagaattgtaactatcaaccagcc
aaagattatctgtgcaaaacaactcatttggtttgtcttatccttaagtg
tttacttacttccatcctcaatcttcattaagtgaagaaaatatgaatac
aaatagatgagagtaaagtaaatcctgaagtaacagttccaatgttgata
cctctataatcaaggaactaataataaagtaaaagagcaatctcactgga
cagtcatgccctgagtataaccttctcaacatatttaaacaccccatata
atcagatttttctgaatacaacttcaaaaggaagaaaatgaatcgactac
tgaaaatgtagggtttttttttcattctttctttgtttctcgggagcttg
aactttttctatttcttaggttgctcggcaactgtaggtgtattaattta
atttatgttcaacattgtacacttctcagctttattctttcttataaaaa
gaaagctattgttaaacaaaataatttctttgcacattaaagtaatagca
ctttgaattcaagtgtcttccagcccacacaaatcaaatcacatccatac
taacataaaaagtatatagttggatggtatattctcatgtctgagtgata
aggtcattgaaaagtcatacattttttttttctaatacactgaagattct
tttaaaatttttctgttaagattttctttgaatttttattagatttttaa
aattaactcaatgttaaacctttcttgtt
gaattctcctccttggtttactgtggataattgaccttgactttccatta
ctttgctttctcattctatctttttcttatctttcagaatagatagattg
aatttagggtttggcaacaaagaagattttactatgttgtctaaataatt
tgtaaattgacttttatatgtaaattttatatttacatcctagcaatcag
tcacagcagagtgacagatatgtatgtgggggcttttctttttaattatc
tatggaaacgaatgtcagacttcgctttttaaagttgccttactaacact
gacatctaaaataataaatttttcttttgatttttgttctatatacaggg
tgttaacagtgtagcccaggctagtctagtactcacaagcctaaaactat
tctagtgttctagcctaaaactaatggcctctttctgcctctcaggtgct
agcattacagatgctcctcctgtcacagacatgttctaacccatgtataa
ttttgtgccatacactgtttatttacttgacttttctgtcagctgagaat
gggcatttttgtagatccatgatgctataagtaaacaggaaacattagta
cctgacttgaaaaagaaccccaagttttattgaagaagttcgagttataa
ttgacttgtttctttgtttaaccagtgaagctggctttccaaagctgtgg
attacacatgttttctttgcctagaattatcatttcattataaattgtgc
tcatgtagctataaaatctaggagaacttttaagagatggatttgaaggc
ctctgtaggtgatgttagccaaggtctttgaaaggtgatcaaggcttgtt
ttgctgcacatatgctgaatagagttcagaaaaacacataaaaagaacat
agagttgaatagacactgacacgcaatattattaatccagtaaaatcctt
tatgtcatcttgaggctaaaggagacatttggaattgtggctgctcattg
tcagaatgcatactaacatagtttcatgagttcatttcatgcaaactgta
agctctaagttactttcattatgataaaatattggaatgtttctaacctg
agcatacagatgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24730931_24732023
seq2: B6Ng01-028H24.b_43_1121

seq1  GAATTCTTTGATGGACCTAAATAGAGGGAAGATTATGGGCAGGATCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATGGACCTAAATAGAGGGAAGATTATGGGCAGGATCTGGG  50

seq1  AAGAGCAGGTTGGAAAACTGATAGACTATATTGTGTGAATGTTTTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGTTGGAAAACTGATAGACTATATTGTGTGAATGTTTTTTTCA  100

seq1  ATAAAAATAAGGAAGTAATATGTATGCATGATTCCACACGTACACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAGGAAGTAATATGTATGCATGATTCCACACGTACACACATG  150

seq1  TATACACACATATGACACACACACACATGCTAGAAATAAAAATAAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACATATGACACACACACACATGCTAGAAATAAAAATAAAATAT  200

seq1  TTTAAATGAAAATTAATCTTTTGTGTTATGCTCAATGAGAAATGATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAAATTAATCTTTTGTGTTATGCTCAATGAGAAATGATTAAT  250

seq1  GTCTAACATTTGATGTCCTCCACAGAGCACATGGTAAAACTAAGGTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACATTTGATGTCCTCCACAGAGCACATGGTAAAACTAAGGTAACC  300

seq1  TTAGCAAACAATATATGGTTCTAAAAGAGAATTGTAACTATCAACCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACAATATATGGTTCTAAAAGAGAATTGTAACTATCAACCAGCC  350

seq1  AAAGATTATCTGTGCAAAACAACTCATTTGGTTTGTCTTATCCTTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATCTGTGCAAAACAACTCATTTGGTTTGTCTTATCCTTAAGTG  400

seq1  TTTACTTACTTCCATCCTCAATCTTCATTAAGTGAAGAAAATATGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTACTTCCATCCTCAATCTTCATTAAGTGAAGAAAATATGAATAC  450

seq1  AAATAGATGAGAGTAAAGTAAATCCTGAAGTAACAGTTCCAATGTTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGAGAGTAAAGTAAATCCTGAAGTAACAGTTCCAATGTTGATA  500

seq1  CCTCTATAATCAAGGAACTAATAATAAAGTAAAAGAGCAATCTCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAATCAAGGAACTAATAATAAAGTAAAAGAGCAATCTCACTGGA  550

seq1  CAGTCATGCCCTGAGTATAACCTTCTCAACATATTTAAACACCCCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGCCCTGAGTATAACCTTCTCAACATATTTAAACACCCCATATA  600

seq1  ATCAGATTTTTCTGAATACAACTTCAAAAGGAAGAAAATGAATCGACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTTTCTGAATACAACTTCAAAAGGAAGAAAATGAATCGACTAC  650

seq1  TGAAAATGTAGGGTTTTTTTTTCATTCTTTCTTTGTTTCTCGGGAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTAGGGTTTTTTTTTCATTCTTTCTTTGTTTCTCGGGAGCTTG  700

seq1  AACTTTTTCTATTTCTTAGGTTGCTCGGCAACTGTAGGTGTATTAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTCTATTTCTTAGGTTGCTCGGCAACTGTAGGTGTATTAATTTA  750

seq1  ATTTATGTTCAACATTGTACACTTCTCAGCTTTATTCTTTCTTATAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTCAACATTGTACACTTCTCAGCTTTATTCTTTCTTATAAAAA  800

seq1  GAAAGCTATTGTTAAACAAAATAATTTCTTTGCACATTAAAGTAATAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATTGTTAAACAAAATAATTTCTTTGCACATTAAAGTAATAGCA  850

seq1  CTTTGAATTCAAGTGTCTTCCAGCCCACACAAATCAAATCACATCCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATTCAAGTGTCTTCCAGCCCACACAAATCAAATCACATCCATAC  900

seq1  TAACATAAAAAGTATATAGTTGGATGGTATATTCTCATGTCTGAAGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAACATAAAAAGTATATAGTTGGATGGTATATTCTCATGTCTG-AGTGAT  949

seq1  AAGGTCATTGAAAAAGTCATACAATTTTTTTTTCTAAATACAACTGAAGA  1000
      |||||||||| |||||||||||| ||||||||||| ||||| ||||||||
seq2  AAGGTCATTG-AAAAGTCATACATTTTTTTTTTCT-AATAC-ACTGAAGA  996

seq1  TTCTTTTAAAAATTTTTCTGTT-AGATTTTCTTTTGAATTTTTTATTAGA  1049
      ||||||| |||||||||||||| |||||||| |||||| |||||||||||
seq2  TTCTTTT-AAAATTTTTCTGTTAAGATTTTC-TTTGAA-TTTTTATTAGA  1043

seq1  TTTTTTTAAAATTTATACTTCAAATGTTATATCCTTTCCTTGTT  1093
        ||||||||||| |  |    ||||||| | ||||| ||||||
seq2  --TTTTTAAAATTAACTC----AATGTTA-AACCTTT-CTTGTT  1079

seq1: chr3_24823341_24824467
seq2: B6Ng01-028H24.g_64_1179 (reverse)

seq1  AATACATCTGTAGCTTCAAGTTTAGAAACATTACAATAATTTTAATCAAA  50
      ||||||||||||   || || ||||||||||| |||||  ||| |||  |
seq2  AATACATCTGTATGCTC-AGGTTAGAAACATTCCAATA--TTTTATC--A  45

seq1  TAATGAAAGTAAAACTTAGAGACTTACAGTTTGCATTGAAATGAACTCAT  100
      ||||||||||  ||||||||| ||||||||||||| ||||||||||||||
seq2  TAATGAAAGT--AACTTAGAG-CTTACAGTTTGCA-TGAAATGAACTCAT  91

seq1  GAAACTATGTTAGTATGCATTCTGACAATGAGCAG-CACAATTCCAAATG  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAACTATGTTAGTATGCATTCTGACAATGAGCAGCCACAATTCCAAATG  141

seq1  TCTCCTTTAGCCTCAAGATGACATAAAGGATTTTACTGGATTAATAATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTAGCCTCAAGATGACATAAAGGATTTTACTGGATTAATAATAT  191

seq1  TGCGTGTCAGTGTCTATTCAACTTCTATGTTCTTTTTTATGTGTTTTTCC  249
      |||||||||||||||||||||| ||||||||| ||||||||||||||| |
seq2  TGCGTGTCAGTGTCTATTCAAC-TCTATGTTC-TTTTTATGTGTTTTT-C  238

seq1  TGAACTCTATTCAGCATATGTGCAGCAAAACAAGCCTTGATCACCTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTATTCAGCATATGTGCAGCAAAACAAGCCTTGATCACCTTTCA  288

seq1  AAGACCTTGGCTAACATCACCTACAGAGGCCTTCAAATCCATCTCTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTGGCTAACATCACCTACAGAGGCCTTCAAATCCATCTCTTAAA  338

seq1  AGTTCTCCTAGATTTTATAGCTACATGAGCACAATTTATAATGAAATGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCTAGATTTTATAGCTACATGAGCACAATTTATAATGAAATGAT  388

seq1  AATTCTAGGCAAAGAAAACATGTGTAATCCACAGCTTTGGAAAGCCAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGCAAAGAAAACATGTGTAATCCACAGCTTTGGAAAGCCAGCT  438

seq1  TCACTGGTTAAACAAAGAAACAAGTCAATTATAACTCGAACTTCTTCAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTTAAACAAAGAAACAAGTCAATTATAACTCGAACTTCTTCAAT  488

seq1  AAAACTTGGGGTTCTTTTTCAAGTCAGGTACTAATGTTTCCTGTTTACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGGGTTCTTTTTCAAGTCAGGTACTAATGTTTCCTGTTTACTT  538

seq1  ATAGCATCATGGATCTACAAAAATGCCCATTCTCAGCTGACAGAAAAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCATGGATCTACAAAAATGCCCATTCTCAGCTGACAGAAAAGTC  588

seq1  AAGTAAATAAACAGTGTATGGCACAAAATTATACATGGGTTAGAACATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAAACAGTGTATGGCACAAAATTATACATGGGTTAGAACATGT  638

seq1  CTGTGACAGGAGGAGCATCTGTAATGCTAGCACCTGAGAGGCAGAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAGGAGGAGCATCTGTAATGCTAGCACCTGAGAGGCAGAAAGAG  688

seq1  GCCATTAGTTTTAGGCTAGAACACTAGAATAGTTTTAGGCTTGTGAGTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAGTTTTAGGCTAGAACACTAGAATAGTTTTAGGCTTGTGAGTAC  738

seq1  TAGACTAGCCTGGGCTACACTGTTAACACCCTGTATATAGAACAAAAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGCCTGGGCTACACTGTTAACACCCTGTATATAGAACAAAAATC  788

seq1  AAAAGAAAAATTTATTATTTTAGATGTCAGTGTTAGTAAGGCAACTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATTTATTATTTTAGATGTCAGTGTTAGTAAGGCAACTTTAA  838

seq1  AAAGCGAAGTCTGACATTCGTTTCCATAGATAATTAAAAAGAAAAGCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAAGTCTGACATTCGTTTCCATAGATAATTAAAAAGAAAAGCCCC  888

seq1  CACATACATATCTGTCACTCTGCTGTGACTGATTGCTAGGATGTAAATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATATCTGTCACTCTGCTGTGACTGATTGCTAGGATGTAAATAT  938

seq1  AAAATTTACATATAAAAGTCAATTTACAAATTATTTAGACAACATAGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTACATATAAAAGTCAATTTACAAATTATTTAGACAACATAGTAA  988

seq1  AATCTTCTTTGTTGCCAAACCCTAAATTCAATCTATCTATTCTGAAAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTTGTTGCCAAACCCTAAATTCAATCTATCTATTCTGAAAGAT  1038

seq1  AAGAAAAAGATAGAATGAGAAAGCAAAGTAATGGAAAGTCAAGGTCAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGATAGAATGAGAAAGCAAAGTAATGGAAAGTCAAGGTCAATT  1088

seq1  ATCCACAGTAAACCAAGGAGGAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ATCCACAGTAAACCAAGGAGGAGAATTC  1116