BAC Information

Click to search

BAC

Clone NameB6Ng01-029C24
Chromosome3 (Build37)
Map Location 56,900,086 - 57,029,416
singlet/doubletdoublet
Overlap geneLOC666585
Upstream geneLOC100040139
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C24.bB6Ng01-029C24.g
ACCDH859457DH859458
length1,1791,080
definitionDH859457|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C24, 5' end.DH859458|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,028,221 - 57,029,416)(56,900,086 - 56,901,176)
sequence
gaattccaaagtttatagatttgattaaaaaaaagtcattgcattttctc
tcgcactgtacactgattcagtttcctataggactgccagaatccacagg
agtacttttctgttacgtcttgaaactactttaaaccacatttattattc
ccaacatctgatattaatagtatgttaaactgctctactatgtgtaaata
ctacataggagggctttccctcaggattatgtcagttattatatatatga
catcctgttagccacccccaaagagaaagagctataatccatgcatgata
tgactcaggatatgctatataaaaatggtcttattattgcatctgaaaaa
gcacaaaggtcagatactgtacaatatgtgggacaactagttattagaac
aactattaaaccacaaaaatgtgtattagataagacaatttaaaaacaac
tactttcaggaattattagggaatattagctggctgcatctacatcaaga
atacctaattacgcactaactagcctatttaaaaggaaagatggcattgg
ttagtcctcacatattatcttgagaggcacaggaagaactacagctattt
gaatccagattctaaaaggcatttttgtatcatgtggatcctttgctgcc
tttaaacttacatatttcccccactaaatcagtagttcttaatttctagg
ttgttacctctttgagagttgaataactttcatggggggagcaactaaga
caatatgttggaaagaacagatatttatattataattcataaaagtagca
aagttacaggtgtgaagtagcaatgaaaacaattttatgttcggaggtca
tcctaacacgaggaactgtaggtgtttaaagggtgacaggactgggaaag
gctaagaaccacagcactcaactgtcttctgcagatatagcagaggacga
tgaagcttcaaaatggacttatttacctcgtagggtcataaaatactgct
tgctcaattagcaaattagggagggaccgatagcacattatatgatttac
tcctactatattttatacccttgaaacgagttataagagcataccatccc
atggatatcaattttcatttcgatactagctagaataagaaatcctattc
tagctgtcaacccagaaccttctcatatg
gaattcttttgaagtttggcaagcagttaagcagttctggtttttcagaa
agatgaagccatcaaagctcaaggcaataacaatctgcagctgaaatggg
ctacagtctccacaatggcggtttcaattggccctgcaggagtcattcag
tagcagtctggtcaggctgtattctctcaaataaggaactgaccattctt
gggtagaggaagaagcaggaaatggagacgattttctgagcaatttagga
gtagagcactttcatttcaatgatagaggaacaataattggtaaaaatat
ctaccttgtagtggggacctcaaaattgtggaactaaagtccatcatgga
gccatgaaagaagggaagctggctaaaggaaagcacatttgctttgccct
aagattgggatgacagttccacccatgtatccatatgtggctaatgatca
actccccagtgttgctagaagaagacattcattgtattaactcacatggc
ctatttctagtggtgattccctttaaatttggcagaggttatctgtgatc
ctaacagaacagtcagtagtcaatgtcagaaaggagggtgaacagatgcc
cagcagcccgccaacactgataacaactccaaagaaaacagcatcctccc
tgaactactggccagaatcctatcacacaactttaaagaactaagacctt
gtgccaatagttatccttcactgtgccattccagtaggatgtttagtaat
tgttcagcttgagcaaatgtgctaattcattaaaaataaaaacaacatta
aactctcagtgaagaactgcttcaccatcctgaagcccagccttcaggaa
tgaagacagctcctaaccctttccctggttacatccagtaatgccagata
aaatcacgaagaatcacagggattttgatttgactctgagaagcatgtga
gatattaggaaaagcactggatttgagacaacagatggttccaaaaatgt
tttcatccagcttctctacttgagtttctccactacgcactgagtatcca
tgagtgctagctggtctacacagtgacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57028221_57029416
seq2: B6Ng01-029C24.b_42_1220 (reverse)

seq1  CATATGAGAAGATCTTGGAGTTTGACAGCTAGATAATGATTTTCTATTCT  50
      ||||||||||| |  ||  | ||||||||||||  | |||||  ||||||
seq2  CATATGAGAAGGTTCTG--GGTTGACAGCTAGAATAGGATTTCTTATTCT  48

seq1  AAGCTAGTAATCTGCAAATGAAAATTGATAATCCATGGAGATTGGTAATG  100
       ||||||||   |  |||||||||||||| |||||||| || |||| |||
seq2  -AGCTAGTA---TCGAAATGAAAATTGAT-ATCCATGG-GA-TGGT-ATG  90

seq1  CTCTTATAACCTCGTTTTCAAGGGTAATAAAATATAGTAAGAGTTAAATC  150
      ||||||||| |||| |||||||||| ||||||||||||| ||| ||||| 
seq2  CTCTTATAA-CTCG-TTTCAAGGGT-ATAAAATATAGTAGGAG-TAAAT-  135

seq1  CATATAATTGTTGCTATCGGTCCCTCCCTTAATTTGCTAATTGAGCAAGC  200
      ||||||||   ||||||||||||||||| |||||||||||||||||||||
seq2  CATATAAT--GTGCTATCGGTCCCTCCC-TAATTTGCTAATTGAGCAAGC  182

seq1  AGTA-TTTATGACCCCTACGAGGTAAATAAGTCCATTTTGAAGCTTCATC  249
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTATGA-CCCTACGAGGTAAATAAGTCCATTTTGAAGCTTCATC  231

seq1  GTCCTCTGCTATATCTGCAGAAGACAGTTGAGTGCTGTGGTTCTTAGCC-  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCCTCTGCTATATCTGCAGAAGACAGTTGAGTGCTGTGGTTCTTAGCCT  281

seq1  TTCCCAGTCCTGTCACCCTTTAAACACCTACAGTTCCTCGTGTTAGGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCCTGTCACCCTTTAAACACCTACAGTTCCTCGTGTTAGGATG  331

seq1  ACCTCCGAACATAAAATTGTTTTCATTGCTACTTCACACCTGTAACTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGAACATAAAATTGTTTTCATTGCTACTTCACACCTGTAACTTTG  381

seq1  CTACTTTTATGAATTATAATATAAATATCTGTTCTTTCCAACATATTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTATGAATTATAATATAAATATCTGTTCTTTCCAACATATTGTC  431

seq1  TTAGTTGCTCCCCCCATGAAAGTTATTCAACTCTCAAAGAGGTAACAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCTCCCCCCATGAAAGTTATTCAACTCTCAAAGAGGTAACAACC  481

seq1  TAGAAATTAAGAACTACTGATTTAGTGGGGGAAATATGTAAGTTTAAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAGAACTACTGATTTAGTGGGGGAAATATGTAAGTTTAAAGG  531

seq1  CAGCAAAGGATCCACATGATACAAAAATGCCTTTTAGAATCTGGATTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGATCCACATGATACAAAAATGCCTTTTAGAATCTGGATTCAA  581

seq1  ATAGCTGTAGTTCTTCCTGTGCCTCTCAAGATAATATGTGAGGACTAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTAGTTCTTCCTGTGCCTCTCAAGATAATATGTGAGGACTAACC  631

seq1  AATGCCATCTTTCCTTTTAAATAGGCTAGTTAGTGCGTAATTAGGTATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTTTCCTTTTAAATAGGCTAGTTAGTGCGTAATTAGGTATTC  681

seq1  TTGATGTAGATGCAGCCAGCTAATATTCCCTAATAATTCCTGAAAGTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAGATGCAGCCAGCTAATATTCCCTAATAATTCCTGAAAGTAGT  731

seq1  TGTTTTTAAATTGTCTTATCTAATACACATTTTTGTGGTTTAATAGTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAATTGTCTTATCTAATACACATTTTTGTGGTTTAATAGTTGT  781

seq1  TCTAATAACTAGTTGTCCCACATATTGTACAGTATCTGACCTTTGTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACTAGTTGTCCCACATATTGTACAGTATCTGACCTTTGTGCTT  831

seq1  TTTCAGATGCAATAATAAGACCATTTTTATATAGCATATCCTGAGTCATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGCAATAATAAGACCATTTTTATATAGCATATCCTGAGTCATA  881

seq1  TCATGCATGGATTATAGCTCTTTCTCTTTGGGGGTGGCTAACAGGATGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGGATTATAGCTCTTTCTCTTTGGGGGTGGCTAACAGGATGTC  931

seq1  ATATATATAATAACTGACATAATCCTGAGGGAAAGCCCTCCTATGTAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAATAACTGACATAATCCTGAGGGAAAGCCCTCCTATGTAGTA  981

seq1  TTTACACATAGTAGAGCAGTTTAACATACTATTAATATCAGATGTTGGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATAGTAGAGCAGTTTAACATACTATTAATATCAGATGTTGGGA  1031

seq1  ATAATAAATGTGGTTTAAAGTAGTTTCAAGACGTAACAGAAAAGTACTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATGTGGTTTAAAGTAGTTTCAAGACGTAACAGAAAAGTACTCC  1081

seq1  TGTGGATTCTGGCAGTCCTATAGGAAACTGAATCAGTGTACAGTGCGAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTCTGGCAGTCCTATAGGAAACTGAATCAGTGTACAGTGCGAGA  1131

seq1  GAAAATGCAATGACTTTTTTTTAATCAAATCTATAAACTTTGGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCAATGACTTTTTTTTAATCAAATCTATAAACTTTGGAATTC  1179

seq1: chr3_56900086_56901176
seq2: B6Ng01-029C24.g_66_1145

seq1  GAATTCTTTTGAAGTTTGGCAAGCAGTTAAGCAGTTCTGGTTTTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAAGTTTGGCAAGCAGTTAAGCAGTTCTGGTTTTTCAGAA  50

seq1  AGATGAAGCCATCAAAGCTCAAGGCAATAACAATCTGCAGCTGAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGCCATCAAAGCTCAAGGCAATAACAATCTGCAGCTGAAATGGG  100

seq1  CTACAGTCTCCACAATGGCGGTTTCAATTGGCCCTGCAGGAGTCATTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTCCACAATGGCGGTTTCAATTGGCCCTGCAGGAGTCATTCAG  150

seq1  TAGCAGTCTGGTCAGGCTGTATTCTCTCAAATAAGGAACTGACCATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCTGGTCAGGCTGTATTCTCTCAAATAAGGAACTGACCATTCTT  200

seq1  GGGTAGAGGAAGAAGCAGGAAATGGAGACGATTTTCTGAGCAATTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGGAAGAAGCAGGAAATGGAGACGATTTTCTGAGCAATTTAGGA  250

seq1  GTAGAGCACTTTCATTTCAATGATAGAGGAACAATAATTGGTAAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCACTTTCATTTCAATGATAGAGGAACAATAATTGGTAAAAATAT  300

seq1  CTACCTTGTAGTGGGGACCTCAAAATTGTGGAACTAAAGTCCATCATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTAGTGGGGACCTCAAAATTGTGGAACTAAAGTCCATCATGGA  350

seq1  GCCATGAAAGAAGGGAAGCTGGCTAAAGGAAAGCACATTTGCTTTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAAGAAGGGAAGCTGGCTAAAGGAAAGCACATTTGCTTTGCCCT  400

seq1  AAGATTGGGATGACAGTTCCACCCATGTATCCATATGTGGCTAATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGGATGACAGTTCCACCCATGTATCCATATGTGGCTAATGATCA  450

seq1  ACTCCCCAGTGTTGCTAGAAGAAGACATTCATTGTATTAACTCACATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAGTGTTGCTAGAAGAAGACATTCATTGTATTAACTCACATGGC  500

seq1  CTATTTCTAGTGGTGATTCCCTTTAAATTTGGCAGAGGTTATCTGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTAGTGGTGATTCCCTTTAAATTTGGCAGAGGTTATCTGTGATC  550

seq1  CTAACAGAACAGTCAGTAGTCAATGTCAGAAAGGAGGGTGAACAGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAACAGTCAGTAGTCAATGTCAGAAAGGAGGGTGAACAGATGCC  600

seq1  CAGCAGCCCGCCAACACTGATAACAACTCCAAAGAAAACAGCATCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCGCCAACACTGATAACAACTCCAAAGAAAACAGCATCCTCCC  650

seq1  TGAACTACTGGCCAGAATCCTATCACACAACTTTAAAGAACTAAGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACTGGCCAGAATCCTATCACACAACTTTAAAGAACTAAGACCTT  700

seq1  GTGCCAATAGTTATCCTTCACTGTGCCATTCCAGTAGGATGTTTAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATAGTTATCCTTCACTGTGCCATTCCAGTAGGATGTTTAGTAAT  750

seq1  TGTTCAGCTTGAGCAAATGTGCTAATTCATTAAAAATAAAAACAACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTGAGCAAATGTGCTAATTCATTAAAAATAAAAACAACATTA  800

seq1  AACTCTCAGTGAAGAACTGCTTCACCATCCTGAAGCCCAGCCTTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGTGAAGAACTGCTTCACCATCCTGAAGCCCAGCCTTCAGGAA  850

seq1  TGAAGACAGCTCCTAACCCTTTCCCTGGTTACATCCAGTAATGCCAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGACAGCTCCTAACCCTTTCCCTGGTTACATCCAGTAATGCCAGAT-  899

seq1  AAAATCACGAAGAATCACAGGGATTTTGATTTGACTCTGAGAAGCATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACGAAGAATCACAGGGATTTTGATTTGACTCTGAGAAGCATGTG  949

seq1  AGATAATTAGGAAAAAGCACTGGATTTGAGACAAACAGAAGGGTTCCAAA  1000
      |||| |||||| |||||||||||||||||||| ||||| | ||||||   
seq2  AGAT-ATTAGG-AAAAGCACTGGATTTGAGAC-AACAG-ATGGTTCC---  992

seq1  AAAAATGTCTCCATCCAGCTTCTCTAACTTGAGTTTTCTCAACTACGCAC  1050
      |||||||| | |||||||||||||| ||||||| |||||| |||||||||
seq2  AAAAATGTTTTCATCCAGCTTCTCT-ACTTGAG-TTTCTCCACTACGCAC  1040

seq1  TGAGTATCCATGAGTGCTAGCTTGTCTACACAAGTGACGTG  1091
      |||||||||||||||||||||| |||||||| |||||||||
seq2  TGAGTATCCATGAGTGCTAGCTGGTCTACAC-AGTGACGTG  1080