BAC Information

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BAC

Clone NameB6Ng01-029G16
Chromosome3 (Build37)
Map Location 133,639,139 - 133,640,151
singlet/doubletsinglet
Overlap geneLOC100039168
Upstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G16.bB6Ng01-029G16.g
ACCDH859624DH859625
length1,2111,037
definitionDH859624|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G16, 5' end.DH859625|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatattcttctacatgataaccccagttgtgccagcaccatttgt
tgaaaatgctgtctttttccaccggatggttttagctcccttgtgaaaga
ccaagtgaccataggtgtgtggactaatttctgagtcttcaattatattc
cgttggtctaactgtctgttgctgaaccagtaccatgcagtttttatcac
aatggttctgtagtacaactttagatcaggcatggtgattccaccagagg
ttcttttatcattgagaatagttttttgctgtactagtttttttgttatt
ccagatgaatttgcaaattgtctttctaactctgtcaagaattgagttgg
aattttgatgggattgcattaaatctgtaggttgcttttggcaggatagg
catttttacgatattaatcctgccaatccatgagcatgggaaatctttcc
atcttctgagatcttttttgatttctttcttcagagtcttgaagttctta
tcatacagatctttcacttccttagttagagtcatgccaacgtattttgt
attatttgtgactattgagaagggtgtggtttccctcatttctttctcaa
cctgtttatcctttttatagagaaagccattgatttgtttgagttaattt
tatccagctactgcactgaagctgtttatcctttttaggagttctctgct
ggaatttttcaggtcacctatatatgctctcatatcatctgcaaatagtg
atattttgacttgttcctttacaatttgtatgcccttgatgtccttttgt
tgtctaattgctctggctaagacttcaagtattatgttgcataggtatgg
agaaagtgggcagccttgtctagtccctcagtttagagggattgcttcaa
gtttctctccatttagtttgatgttggttactggtttgctgtgtattgct
tttattatatttaggtatgggctttgaattcctgatctttccaagacttt
tatcatgaatgggagttggatttttgtcagtgctttctcagatctaatga
gaagaatcatgtggttttttgttttgagttggttatataagggaataatg
cttatggagttataataaaccaccctccccccctgttgagccctcttgac
cgaatggcggagattgagtgttcttggatggtgttggaatatatgagtat
ctattgcatac
gaattctacccaagtggatcctggcttggcatcgggaaagaatgggctgg
gataggtgccctcgctgtggcccttgttttggcatgcatgttgtttgtat
ggtgtatgtgtcggttgcagaatgcccaggcccgcactgcagccacagag
gtgcaagcttttgccacagtggaagcagggcagtcacctcagatttggct
tgctgccatgaagaatgaacaatgaagccatcgctccgtagggttgtaag
gctaagcactgcacaaaggttagtctggaagctgtttgacaatctctggg
aggtatgtctgattgcatgagggttgagtgtcctagtgtccttcccccag
gaaaatatggcacgggagcaggtcagggttgctctgggtaaaaacctgtg
agcctaagactcaatcctgtacatggcccctatttctgcacactggggat
cagacctctatctttacccacggagcttgcttcaaaagaatataaaaggg
ggaattgtgggaagccattttggactccctggacagcccggacagaaatc
tgtgccaggcagtaaacaagcccatatttggtggatggctcgcccttaat
ccctgattggctgagcaagcctgcctggtgaaatgatgtgacatgtggtg
ggttgaggcatggttgtggcttgagtgcataaaaacgcttgtaccccgag
gctcaggggagttgaagagagaagctacctgagtaaaactgcattaagaa
gaaccagtggttgcattttccttgctggtcgagttggacgcaacactaaa
caaagaattctcacctgaggaatgccgaatggctgagaagcacctgaaaa
atgttcagcatagttaatcatcagggaaatgcaaatcaaaacaccctgag
attccaccccacaccagtcagaatggctaagatcaaaattcagtgacagc
agatgctggtgaggatgtggagaagaggacactcctccgttgttgttggg
atgcagctgtacaccatctgaaatcagcctgggcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133639139_133640151
seq2: B6Ng01-029G16.g_97_1099 (reverse)

seq1  ACTG-CCAGGCTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCA  49
      |||| |||||||||||| |||| ||| ||||| ||| ||| |||||| ||
seq2  ACTGCCCAGGCTGATTT-CAGA-TGG-TGTAC-AGC-TGC-ATCCCAACA  44

seq1  ACAACGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGT  99
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  ACAACGGAGGAGTG-TCCTC-TTCTCCACATCCTCACCAGCATCTGCTGT  92

seq1  CACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGGGGTGGAATCTC  149
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTGAA-TTTTGATCTTAGCCATTCTGACTGGTGTGGGGTGGAATCTC  140

seq1  AGGGTTGTTTTGATTTGCATTTCCCTGATGATTAACTATGCTGAACATTT  199
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGG-TGTTTTGATTTGCATTTCCCTGATGATTAACTATGCTGAACA-TT  188

seq1  TTTCAGGTGCTTCTCAGCCATTCGGCATTCCTCAGGTGAGAATTCTTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTGCTTCTCAGCCATTCGGCATTCCTCAGGTGAGAATTCTTTGT  238

seq1  TTAGTGTTGCGTCCAACTCGACCAGCAAGGAAAATGCAACCACTGGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTGCGTCCAACTCGACCAGCAAGGAAAATGCAACCACTGGTTCT  288

seq1  TCTTAATGCAG-TTTACTCAGGTAGCTTCTCTCTTCAACTCCCCTGAGCC  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGCAGTTTTACTCAGGTAGCTTCTCTCTTCAACTCCCCTGAGCC  338

seq1  TCGGGGTACAAGCGTTTTTATGCACTCAAGCCACAACCATGCCTCAACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTACAAGCGTTTTTATGCACTCAAGCCACAACCATGCCTCAACCC  388

seq1  ACCACATGTCACATCATTTCACCAGGCAGGCTTGCTCAGCCAATCAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGTCACATCATTTCACCAGGCAGGCTTGCTCAGCCAATCAGGGA  438

seq1  TTAAGGGCGAGCCATCCACCAAATATGGGCTTGTTTACTGCCTGGCACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCGAGCCATCCACCAAATATGGGCTTGTTTACTGCCTGGCACAG  488

seq1  ATTTCTGTCCGGGCTGTCCAGGGAGTCCAAAATGGCTTCCCACAATTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTCCGGGCTGTCCAGGGAGTCCAAAATGGCTTCCCACAATTCCC  538

seq1  CCTTTTATATTCTTTTGAAGCAAGCTCCGTGGGTAAAGATAGAGGTCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATATTCTTTTGAAGCAAGCTCCGTGGGTAAAGATAGAGGTCTGA  588

seq1  TCCCCAGTGTGCAGAAATAGGGGCCATGTACAGGATTGAGTCTTAGGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGTGCAGAAATAGGGGCCATGTACAGGATTGAGTCTTAGGCTC  638

seq1  ACAGGTTTTTACCCAGAGCAACCCTGACCTGCTCCCGTGCCATATTTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTTACCCAGAGCAACCCTGACCTGCTCCCGTGCCATATTTTCC  688

seq1  TGGGGGAAGGACACTAGGACACTCAACCCTCATGCAATCAGACATACCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAGGACACTAGGACACTCAACCCTCATGCAATCAGACATACCTC  738

seq1  CCAGAGATTGTCAAACAGCTTCCAGACTAACCTTTGTGCAGTGCTTAGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATTGTCAAACAGCTTCCAGACTAACCTTTGTGCAGTGCTTAGCC  788

seq1  TTACAACCCTACGGAGCGATGGCTTCATTGTTCATTCTTCATGGCAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCCTACGGAGCGATGGCTTCATTGTTCATTCTTCATGGCAGCAA  838

seq1  GCCAAATCTGAGGTGACTGCCCTGCTTCCACTGTGGCAAAAGCTTGCACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCTGAGGTGACTGCCCTGCTTCCACTGTGGCAAAAGCTTGCACC  888

seq1  TCTGTGGCTGCAGTGCGGGCCTGGGCATTCTGCAACCGACACATACACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTGCAGTGCGGGCCTGGGCATTCTGCAACCGACACATACACCA  938

seq1  TACAAACAACATGCATGCCAAAACAAGGGCCACAGCGAGGGCACCTATCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAACATGCATGCCAAAACAAGGGCCACAGCGAGGGCACCTATCC  988

seq1  CAGCCCATTCTTTCC  1013
      |||||||||||||||
seq2  CAGCCCATTCTTTCC  1003