BAC Information

Click to search

BAC

Clone NameB6Ng01-029I21
Chromosome3 (Build37)
Map Location 145,047,999 - 145,191,283
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I21.bB6Ng01-029I21.g
ACCDH859724DH859725
length1,186480
definitionDH859724|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I21, 5' end.DH859725|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,047,999 - 145,049,207)(145,190,798 - 145,191,283)
sequence
gaattcatctctactagttttggatttcaaagctactcagaggatgagta
cagtccaaatcatactgtgctctgtgtatttgaagtacaagaacaagtac
cacctacaagaatcaaatattttcagtgaccttaggtagcataaatatca
tctataacaatttataagatttaaagctaccatgaaaaaaatatcaaatt
tccaaatgatccaaaacacagactgtgttttcaagctagtattataatca
aatatgctccttacctaaaagataatcaaaatctaaagtctgttgattta
cccaaggactaattcagtgagtgaattctgacttttttctaaagatgttc
acatcatcacacacagttcccttccacagaaaatagttatctaatatgcc
tacattggctacttttcctgttactatgataaaaaatactctgagaaaag
caacttaagggagaaaggattatttgggctcccagttcaaggatacagtc
catcatggcagaggagccctagcagcagaagatgatggccacattgcatc
ttcagaggcagaaaatccttgtgcttagctagcttcctcctctttctgca
agcctatggaatggtgtcactcatagtatacaaaccaatggaatggtgcc
acccacagtgtgcaagcctagggaatggtgtcacccacagtgcaagccta
aggaatggtgtcacccacagtgtaagtagttctctccaactcagttaact
taatcaaaacaatccttcacaatcatgcccataggctaacctaaatatcc
ctcacaggtgtgcttggagatgtgcctcctgggtgattctggacacgatg
aagttaattatcaatatcatccatcacaggacccaataccaatttgttaa
agaataacaaaaaaaacatacttattaaattatataattgatatgtggta
aaaatcaaaatatttaattgagtttgtttacttatagataattatgatat
tattatcaagtcaaacacagacagagctagcaaagccaggactgcatctt
ataacttttaatttttatcctttcttccactcttctggccttttccctag
ggagtctttaaacatttttcattttctacataatccacatttccaagatt
taataaatgactcatagcctggcctttcgtagcata
attggcacttagtgggaattccatatgctgacttgtctctctttctcatt
tggaaacccagccagattgagttaagagttttgtggacagtcattcagta
acagcttggggtgtcctcatctgagcacagagcttttatgtggagctggg
tgtggtggcaacactgtaatcccagcatttgaaattgagcacaaggtgag
cctgggacactgtttcaaaacaaagtgccagaaaaagctctaagttcagt
gaagggatgaaaagaaaaaaaaaaaaaaagaaaaaagaagagaaaaaagc
tttatgcactatagtttaagagaacatattataacatgaaaatcacttaa
tgttttaaacatgggcataaaactgcccacatctgagtataaagctgtca
gtaagtacagagtaagggttcagaacgaaataaaacaaaacagcttcctc
atgtagtctagtaagggggggggggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145047999_145049207
seq2: B6Ng01-029I21.b_44_1229

seq1  GAATTCATCTCTACTAGTTTTGGATTTCAAAGCTACTCAGAGGATGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTACTAGTTTTGGATTTCAAAGCTACTCAGAGGATGAGTA  50

seq1  CAGTCCAAATCATACTGTGCTCTGTGTATTTGAAGTACAAGAACAAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAATCATACTGTGCTCTGTGTATTTGAAGTACAAGAACAAGTAC  100

seq1  CACCTACAAGAATCAAATATTTTCAGTGACCTTAGGTAGCATAAATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACAAGAATCAAATATTTTCAGTGACCTTAGGTAGCATAAATATCA  150

seq1  TCTATAACAATTTATAAGATTTAAAGCTACCATGAAAAAAATATCAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACAATTTATAAGATTTAAAGCTACCATGAAAAAAATATCAAATT  200

seq1  TCCAAATGATCCAAAACACAGACTGTGTTTTCAAGCTAGTATTATAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGATCCAAAACACAGACTGTGTTTTCAAGCTAGTATTATAATCA  250

seq1  AATATGCTCCTTACCTAAAAGATAATCAAAATCTAAAGTCTGTTGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTCCTTACCTAAAAGATAATCAAAATCTAAAGTCTGTTGATTTA  300

seq1  CCCAAGGACTAATTCAGTGAGTGAATTCTGACTTTTTTCTAAAGATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACTAATTCAGTGAGTGAATTCTGACTTTTTTCTAAAGATGTTC  350

seq1  ACATCATCACACACAGTTCCCTTCCACAGAAAATAGTTATCTAATATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCACACACAGTTCCCTTCCACAGAAAATAGTTATCTAATATGCC  400

seq1  TACATTGGCTACTTTTCCTGTTACTATGATAAAAAATACTCTGAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGCTACTTTTCCTGTTACTATGATAAAAAATACTCTGAGAAAAG  450

seq1  CAACTTAAGGGAGAAAGGATTATTTGGGCTCCCAGTTCAAGGATACAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAAGGGAGAAAGGATTATTTGGGCTCCCAGTTCAAGGATACAGTC  500

seq1  CATCATGGCAGAGGAGCCCTAGCAGCAGAAGATGATGGCCACATTGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGCAGAGGAGCCCTAGCAGCAGAAGATGATGGCCACATTGCATC  550

seq1  TTCAGAGGCAGAAAATCCTTGTGCTTAGCTAGCTTCCTCCTCTTTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGCAGAAAATCCTTGTGCTTAGCTAGCTTCCTCCTCTTTCTGCA  600

seq1  AGCCTATGGAATGGTGTCACTCATAGTATACAAACCAATGGAATGGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGGAATGGTGTCACTCATAGTATACAAACCAATGGAATGGTGCC  650

seq1  ACCCACAGTGTGCAAGCCTAGGGAATGGTGTCACCCACAGTGCAAGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTGTGCAAGCCTAGGGAATGGTGTCACCCACAGTGCAAGCCTA  700

seq1  AGGAATGGTGTCACCCACAGTGTAAGTAGTTCTCTCCAACTCAGTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGTGTCACCCACAGTGTAAGTAGTTCTCTCCAACTCAGTTAACT  750

seq1  TAATCAAAACAATCCTTCACAATCATGCCCATAGGCTAACCTAAATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAACAATCCTTCACAATCATGCCCATAGGCTAACCTAAATATCC  800

seq1  CTCACAGGTGTGCTTGGAGATGTGCCTCCTGGGTGATTCTGGACACGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGTGTGCTTGGAGATGTGCCTCCTGGGTGATTCTGGACACGATG  850

seq1  AAGTTAATTATCAATATCATCCATCACAGGACCCAATACCAATTTGTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTATCAATATCATCCATCACAGGACCCAATACCAATTTGTTAA  900

seq1  AGAATAACAAAAAAAAACATACTTATTAAATTATATAATTGATATGTGGT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAC-AAAAAAAACATACTTATTAAATTATATAATTGATATGTGGT  949

seq1  AAAAATCAAAATATTTAATTGAGTTTGTTTACTTATAGATAATTTATGAT  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAATCAAAATATTTAATTGAGTTTGTTTACTTATAGATAA-TTATGAT  998

seq1  ATTATTATCAAGTCAAAACAACAGACAGAGCTAGCAAAGCCAGGAACTGC  1050
      |||||||||||||||||   |||||||||||||||||||||||| |||||
seq2  ATTATTATCAAGTCAAA--CACAGACAGAGCTAGCAAAGCCAGG-ACTGC  1045

seq1  ATCTTTATAACTTTTAATTTTTTATCCTTTTCTTCAACTCTTCTTGCCCT  1100
      ||| ||||||||||||| ||||||||| ||||||| ||||||| || |||
seq2  ATC-TTATAACTTTTAA-TTTTTATCC-TTTCTTCCACTCTTC-TGGCCT  1091

seq1  TTTCCCCCATAGGAAGTCTTTAAAACATTTTTCATTATTCTACATTAATC  1150
      ||||||   |||| ||||||| |||||||||||||| ||||||| |||||
seq2  TTTCCC---TAGGGAGTCTTT-AAACATTTTTCATT-TTCTACA-TAATC  1135

seq1  CACATTTTCCAAAGTATTTATATAAATGACTCATAGTCTGGCCCTTTTCA  1200
      |||| |||||||   ||||| ||||||||||||||| |||||| ||    
seq2  CACA-TTTCCAA--GATTTA-ATAAATGACTCATAGCCTGGCCTTT----  1177

seq1  CGTAGCATA  1209
      |||||||||
seq2  CGTAGCATA  1186

seq1: chr3_145190798_145191283
seq2: B6Ng01-029I21.g_66_551 (reverse)

seq1  TCTCTCCCCCCCCCCCTTACTAGACTACATGAGGAAGCTGTTTTGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCCCCCCCCTTACTAGACTACATGAGGAAGCTGTTTTGTTTTA  50

seq1  TTTCGTTCTGAACCCTTACTCTGTACTTACTGACAGCTTTATACTCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTCTGAACCCTTACTCTGTACTTACTGACAGCTTTATACTCAGAT  100

seq1  GTGGGCAGTTTTATGCCCATGTTTAAAACATTAAGTGATTTTCATGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTTTTATGCCCATGTTTAAAACATTAAGTGATTTTCATGTTAT  150

seq1  AATATGTTCTCTTAAACTATAGTGCATAAAGCTTTTTTCTCTTCTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTCTTAAACTATAGTGCATAAAGCTTTTTTCTCTTCTTTTTT  200

seq1  CTTTTTTTTTTTTTTTCTTTTCATCCCTTCACTGAACTTAGAGCTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTCTTTTCATCCCTTCACTGAACTTAGAGCTTTTTC  250

seq1  TGGCACTTTGTTTTGAAACAGTGTCCCAGGCTCACCTTGTGCTCAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTTGTTTTGAAACAGTGTCCCAGGCTCACCTTGTGCTCAATTTC  300

seq1  AAATGCTGGGATTACAGTGTTGCCACCACACCCAGCTCCACATAAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGATTACAGTGTTGCCACCACACCCAGCTCCACATAAAAGCT  350

seq1  CTGTGCTCAGATGAGGACACCCCAAGCTGTTACTGAATGACTGTCCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCAGATGAGGACACCCCAAGCTGTTACTGAATGACTGTCCACAA  400

seq1  AACTCTTAACTCAATCTGGCTGGGTTTCCAAATGAGAAAGAGAGACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAACTCAATCTGGCTGGGTTTCCAAATGAGAAAGAGAGACAAGT  450

seq1  CAGCATATGGAATTCCCACTAAGTGCCAATGAATTC  486
      ||||||||||||||||||||||||||||||||||||
seq2  CAGCATATGGAATTCCCACTAAGTGCCAATGAATTC  486