BAC Information

Click to search

BAC

Clone NameB6Ng01-029J22
Chromosome3 (Build37)
Map Location 89,701,897 - 89,888,058
singlet/doubletdoublet
Overlap geneIl6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3
Upstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
Downstream geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029J22.bB6Ng01-029J22.g
ACCDH859772DH859773
length1,1081,097
definitionDH859772|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J22, 5' end.DH859773|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,886,945 - 89,888,058)(89,701,897 - 89,702,994)
sequence
gaattcttcacaagggtggaaaaagaggaagagaaaacacctcttggtgc
acttgcaagagcaagcctgtgttagaagaaccaaagattaaggagtccca
gcaaaagcttcagctgatccagagggtggtaggtttagggcagaaagttc
tacttcttccctatagctgagcagttctctttacaaggaaacaaaaggct
gcaaaaatcaaaatctgatactccctccagaggaatacggaagacagctc
acacaccgctcaggtcagcaggccacaccagctcccggggcaggctagcc
tgagtttgagaaacactacactctatggttttttgttttggggttttttt
ttcccccattattctagatttcacctaatgcccagtagagcctgcctacc
tccccacaatttagaggctacagtgtgaggtcttccattcaacagtaaca
ggagtctccattgttcaggaagcaaaattcggtggtggaatgcagcagcc
atttggtcacattaaaagatggctgacggcagtcttgtctatgacagaag
ttttagtttaaatgctacagtgggctgtcctcctgtgcaagcctgacaac
ctggatttgatcccctgaacccacagaatggtgaaaatgggactccacaa
agttgccctctgacctcaacacacgttatggcgcgtgtacgacccacaaa
cattacatgcatactcgatagtagttttaatgtgaaaagaggcccaaagc
ataccacatcccttaatgtaaggagctgcgagagctggtaggcagagaca
gagcagggccaaggacagacgggagaagtctaaatctggcactctgccac
actggggtttctcgttttagatataaaagtcacaggtgtaattcaggata
gacacagtactagaaagccaggcccatgctgaagaaaggactgctgtgcc
ctgtgttcccatgcatgcctcttccagtgagcttgtcctggggaattcta
caagggcaggaaagctgggattgaagttatctgcgtcccgagtcaacaag
gtggagtctacgaagcctctaagcaagggttgttgctctcctggaacagt
tttcctga
gaattcagaagggagccacctgggggacggctggggtctgaagtctcctt
acacagcaagaaaggaagggagccccacagggaagaggcggtgtatgaga
ccctccaagaggatggatcagcactggctctgctgacagaggaggcccct
gctacggtatgtgcagaccaggctccagtctgcctcccgtaccagcctcg
atgacgacggccacatcttttcctgcttctgtttctccctgcaatgacct
tgaggaggaaccagctcccgacacccagctcctgcttcatcatagagcat
cacagacaagggaagacgggcacctgaggattgtgagtcttcctggccct
tgccaaggcatgtcacatgcagaaaggaacgtgtcatgtcactgcgtccc
aggctcctaacaagactctgcagggaggacagaagtacctcaggtgggac
taaaatcaggaaagaatgcagaatctccctgccagtttctcaaagtgtgt
ccttgccccttggggcacatggtgtgtaatctagccacagcttagttgct
ggctggttggctagggttaggcttctatagtgtcttgcctagttttgttc
atttttgagacaggctcttgctatgtggccctaagctggcctcagagtga
tagtgatcctcctgccgcaggcttcaaaaggctgaaattgtaagcatgta
gcacctggccttacccatgagttttaggcagtgtggagacccctgatggg
gcccatttgccttctctgagcaatgagagttcagacagtggtctgggggc
ccctgagagtcctgctcctggtatctagtgtcccatcactccccagtcat
tacttctcagagggacctctgtttccacaggcaatgcccaacttgaaaca
tacacatcatccatctgtggatggtcattggggtgatcactgggtggggg
tcgggggacagttggtgactaggctgtactaggaccctcagacgaatgtt
tttcctctccccgtgaacagctcctagggaagggaaattccctacttctt
tgcttccctgcctggtgtttacagtctcccttgggacactggcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89886945_89888058
seq2: B6Ng01-029J22.b_48_1147 (reverse)

seq1  ACTGCTCCAGGAGAGGCAAACAACCCTTTGCTCTGAGTGCCTCTGCTAGA  50
      |||| ||||||||||   |||||||| |||||  ||| || ||   ||||
seq2  ACTGTTCCAGGAGAG--CAACAACCC-TTGCTTAGAG-GCTTC--GTAGA  44

seq1  CTCCACCTTTGTTGACTCTGGGACGGCAGATAACTTCAATTCCCAGCTTT  100
      ||||||| |||||||||| ||||| |||||||||||||| ||||||||||
seq2  CTCCACC-TTGTTGACTC-GGGAC-GCAGATAACTTCAA-TCCCAGCTTT  90

seq1  CCTGCCCCTTGGTAGAATTTCCCCAGGACAAGCTCACTGGGAGAGGCATG  150
      |||||||  | |||||| |||||||||||||||||||||| |||||||||
seq2  CCTGCCC--TTGTAGAA-TTCCCCAGGACAAGCTCACTGGAAGAGGCATG  137

seq1  CATGGGAACACAGGGCACAGCAGTCCTTTCTTCAGCATGGGCCTGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGGGAACACAGGGCACAGCAGTCCTTTCTTCAGCATGGGCCTGGC-TT  186

seq1  TCTAGTACTGTGTCTATCCTGAATTACACCTGTGACTTTTATATCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACTGTGTCTATCCTGAATTACACCTGTGACTTTTATATCTAAAA  236

seq1  CGAGAAACCCCAGTGTGGCAGAGTGCCAGATTTAGACTTCTCCCGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAACCCCAGTGTGGCAGAGTGCCAGATTTAGACTTCTCCCGTCTGT  286

seq1  CCTTGGCCCTGCTCTGTCTCTGCCTACCAGCTCTCGCAGCTCCTTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCCTGCTCTGTCTCTGCCTACCAGCTCTCGCAGCTCCTTACATT  336

seq1  AAGGGATGTGGTATGCTTTGGGCCTCTTTTCACATTAAAACTACTATCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTGGTATGCTTTGGGCCTCTTTTCACATTAAAACTACTATCGA  386

seq1  GTATGCATGTAATGTTTGTGGGTCGTACACGCGCCATAACGTGTGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGTAATGTTTGTGGGTCGTACACGCGCCATAACGTGTGTTGAG  436

seq1  GTCAGAGGGCAACTTTGTGGAGTCCCATTTTCACCATTCTGTGGGTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGGCAACTTTGTGGAGTCCCATTTTCACCATTCTGTGGGTTCAG  486

seq1  GGGATCAAATCCAGGTTGTCAGGCTTGCACAGGAGGACAGCCCACTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAATCCAGGTTGTCAGGCTTGCACAGGAGGACAGCCCACTGTAG  536

seq1  CATTTAAACTAAAACTTCTGTCATAGACAAGACTGCCGTCAGCCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACTAAAACTTCTGTCATAGACAAGACTGCCGTCAGCCATCTTT  586

seq1  TAATGTGACCAAATGGCTGCTGCATTCCACCACCGAATTTTGCTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGACCAAATGGCTGCTGCATTCCACCACCGAATTTTGCTTCCTGA  636

seq1  ACAATGGAGACTCCTGTTACTGTTGAATGGAAGACCTCACACTGTAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGACTCCTGTTACTGTTGAATGGAAGACCTCACACTGTAGCCT  686

seq1  CTAAATTGTGGGGAGGTAGGCAGGCTCTACTGGGCATTAGGTGAAATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGTGGGGAGGTAGGCAGGCTCTACTGGGCATTAGGTGAAATCTA  736

seq1  GAATAATGGGGGAAAAAAAAACCCCAAAACAAAAAACCATAGAGTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGGGGGAAAAAAAAACCCCAAAACAAAAAACCATAGAGTGTAGT  786

seq1  GTTTCTCAAACTCAGGCTAGCCTGCCCCGGGAGCTGGTGTGGCCTGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAACTCAGGCTAGCCTGCCCCGGGAGCTGGTGTGGCCTGCTGA  836

seq1  CCTGAGCGGTGTGTGAGCTGTCTTCCGTATTCCTCTGGAGGGAGTATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCGGTGTGTGAGCTGTCTTCCGTATTCCTCTGGAGGGAGTATCAG  886

seq1  ATTTTGATTTTTGCAGCCTTTTGTTTCCTTGTAAAGAGAACTGCTCAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTTTTGCAGCCTTTTGTTTCCTTGTAAAGAGAACTGCTCAGCT  936

seq1  ATAGGGAAGAAGTAGAACTTTCTGCCCTAAACCTACCACCCTCTGGATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGAAGTAGAACTTTCTGCCCTAAACCTACCACCCTCTGGATCA  986

seq1  GCTGAAGCTTTTGCTGGGACTCCTTAATCTTTGGTTCTTCTAACACAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTTTTGCTGGGACTCCTTAATCTTTGGTTCTTCTAACACAGGC  1036

seq1  TTGCTCTTGCAAGTGCACCAAGAGGTGTTTTCTCTTCCTCTTTTTCCACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTGCAAGTGCACCAAGAGGTGTTTTCTCTTCCTCTTTTTCCACC  1086

seq1  CTTGTGAAGAATTC  1114
      ||||||||||||||
seq2  CTTGTGAAGAATTC  1100

seq1: chr3_89701897_89702994
seq2: B6Ng01-029J22.g_68_1164

seq1  GAATTCAGAAGGGAGCCACCTGGGGGACGGCTGGGGTCTGAAGTCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGGAGCCACCTGGGGGACGGCTGGGGTCTGAAGTCTCCTT  50

seq1  ACACAGCAAGAAAGGAAGGGAGCCCCACAGGGAAGAGGCGGTGTATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAAGAAAGGAAGGGAGCCCCACAGGGAAGAGGCGGTGTATGAGA  100

seq1  CCCTCCAAGAGGATGGATCAGCACTGGCTCTGCTGACAGAGGAGGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAGAGGATGGATCAGCACTGGCTCTGCTGACAGAGGAGGCCCCT  150

seq1  GCTACGGTATGTGCAGACCAGGCTCCAGTCTGCCTCCCGTACCAGCCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGGTATGTGCAGACCAGGCTCCAGTCTGCCTCCCGTACCAGCCTCG  200

seq1  ATGACGACGGCCACATCTTTTCCTGCTTCTGTTTCTCCCTGCAATGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGACGGCCACATCTTTTCCTGCTTCTGTTTCTCCCTGCAATGACCT  250

seq1  TGAGGAGGAACCAGCTCCCGACACCCAGCTCCTGCTTCATCATAGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAACCAGCTCCCGACACCCAGCTCCTGCTTCATCATAGAGCAT  300

seq1  CACAGACAAGGGAAGACGGGCACCTGAGGATTGTGAGTCTTCCTGGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAAGGGAAGACGGGCACCTGAGGATTGTGAGTCTTCCTGGCCCT  350

seq1  TGCCAAGGCATGTCACATGCAGAAAGGAACGTGTCATGTCACTGCGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGCATGTCACATGCAGAAAGGAACGTGTCATGTCACTGCGTCCC  400

seq1  AGGCTCCTAACAAGACTCTGCAGGGAGGACAGAAGTACCTCAGGTGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTAACAAGACTCTGCAGGGAGGACAGAAGTACCTCAGGTGGGAC  450

seq1  TAAAATCAGGAAAGAATGCAGAATCTCCCTGCCAGTTTCTCAAAGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGGAAAGAATGCAGAATCTCCCTGCCAGTTTCTCAAAGTGTGT  500

seq1  CCTTGCCCCTTGGGGCACATGGTGTGTAATCTAGCCACAGCTTAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCCTTGGGGCACATGGTGTGTAATCTAGCCACAGCTTAGTTGCT  550

seq1  GGCTGGTTGGCTAGGGTTAGGCTTCTATAGTGTCTTGCCTAGTTTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTGGCTAGGGTTAGGCTTCTATAGTGTCTTGCCTAGTTTTGTTC  600

seq1  ATTTTTGAGACAGGCTCTTGCTATGTGGCCCTAAGCTGGCCTCAGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGACAGGCTCTTGCTATGTGGCCCTAAGCTGGCCTCAGAGTGA  650

seq1  TAGTGATCCTCCTGCCGCAGGCTTCAAAAGGCTGAAATTGTAAGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCCTCCTGCCGCAGGCTTCAAAAGGCTGAAATTGTAAGCATGTA  700

seq1  GCACCTGGCCTTACCCATGAGTTTTAGGCAGTGTGGAGACCCCTGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGCCTTACCCATGAGTTTTAGGCAGTGTGGAGACCCCTGATGGG  750

seq1  GCCCATTTGCCTTCTCTGAGCAATGAGAGTTCAGACAGTGGTCTGGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTGCCTTCTCTGAGCAATGAGAGTTCAGACAGTGGTCTGGGGGC  800

seq1  CCCTGAGAGTCCTGCTCCTGGTATCTAGTGTCCCATCACTCCCCAGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGAGTCCTGCTCCTGGTATCTAGTGTCCCATCACTCCCCAGTCAT  850

seq1  TACTTCTCAGAGGGACCTCTGTTTCCCACAGGCAATGCCCAACTTGAAAC  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACTTCTCAGAGGGACCTCTGTTT-CCACAGGCAATGCCCAACTTGAAAC  899

seq1  ATACACATCATCCATCTGTGGATGGTCATT-GGGTGATCACTGGGTGGGG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATACACATCATCCATCTGTGGATGGTCATTGGGGTGATCACTGGGTGGGG  949

seq1  GTCGGGGGACAGTTGGTGACTAGGCTGTTCCAGGACCCTCAGACGAATGT  999
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  GTCGGGGGACAGTTGGTGACTAGGCTGTACTAGGACCCTCAGACGAATGT  999

seq1  TTTTCCTCT-CCCGTG-ACAGCT-CTAGGGGAGGGAAATTCCCTACCTTC  1046
      ||||||||| |||||| |||||| |||||| |||||||||||||| ||||
seq2  TTTTCCTCTCCCCGTGAACAGCTCCTAGGGAAGGGAAATTCCCTA-CTTC  1048

seq1  CTTGCTTCCCTGCCTGTGTGGCCTACATTCTCTCTCTGGGACACTGGCCC  1096
       ||||||||||||||| || |  |||| |||| || ||||||||||||||
seq2  TTTGCTTCCCTGCCTG-GT-GTTTACAGTCTCCCT-TGGGACACTGGCCC  1095

seq1  CA  1098
      ||
seq2  CA  1097