BAC Information

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BAC

Clone NameB6Ng01-030C10
Chromosome3 (Build37)
Map Location 125,802,302 - 125,944,081
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C10.bB6Ng01-030C10.g
ACCDH860142DH860143
length1,116842
definitionDH860142|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C10, 5' end.DH860143|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,802,302 - 125,803,433)(125,943,346 - 125,944,081)
sequence
gaattcactgctcctggtgagatgttatgtttcatgctttaccctagctc
ttcttttgctccttatttctctaaaggctggcttccctgcttttgctcac
gtctgaaaagtaaaaatatgatccttaccatagctgttgtgggctagaga
cgtaaacacgttcacttctcagaaggagaaatcttttgaacctttggttg
aattagataatttttaccactcttgagccaacatttttgttcttttttct
tactatggaaaacaattaatttgaatatttaaaattaatagtaattattc
cccttttcacttttattgctactctttggaagcaggcttctcagggctaa
cctgccccccacacagaggccatggcattctcatgggccacagatgtcgc
ccgggacccttctgggagcatggcgaaatgaaatcaagataaaatgttgg
agcctgctagaaatctgggcattctaaaacgcaaaatatacgaaatgtat
acaaagctgctgatgatttcgttattttttgaagataattgtctttctac
ttatgcttgcagcatcagaaagaagctgtggtagttgattttctctcatc
cttttggcattaaacctaagcaggaacagtgtatcagcatagtcatagca
gtctcattcctaccagacattgaccagtacagggaaacttcattttcctt
gaagtcttccctatataacctcaccccttcccaaataattttattattac
tgggcatcaatgtatctgtgttgctataacaaaatacctgaatcaagcta
ttttatagaaattgtaagaatctctttcctgtacttctgaagggtgataa
gttcaaggtcaatgagctatcatactctgtggctgtgcagagggaactag
aagggctgcagtcttctagtttttaaaaacacctccaaagataatgaatt
gatccataaagtagagccctcatgacttatcacttctggaaagtctgatg
tcttaatactgattactagagactatgcttcagcataaaatttccaagat
ggagcttgaaaccatagactgcagacctatagtactgtcctggtgtttct
ctttgctgcatgttct
gaattcttgctcgagagatagtatgacctccggaaagtagtcctctgacc
tgcacatgcatgtctcatacatcctcaggctctctcatacagacgcgctt
atacatacatgtgtacacacgtgttataccccttcccgaataataatagt
taggtacctgctacttgaaagctttaggacgcgaaaaagaaaactaggcg
aagtaaataagtaatgacagaacttaaaaaaatgtatacactaaaaataa
ttaaaaaaataaattaatgaatcaaaataaagtctaagaaataagaaatc
aggagaataaaatgattctactgtctatgattctttcatgaaacatactt
taaacttataacatcacgaaggtgaaagcaaagtcatgaaaatgatgtac
tgtacaaatagcattttaaaaatgcaagtgataaagtcttttatcatata
atttggactcccaagacaaattcactttagacaaagagagatattgttaa
caggtaagtggtgtatttatctaaaagatgtgccagtatgaaataccaca
gagattcaaaatctctaaggcaaaggccataaaacctacaaagagaaact
gtcaactgtgggtggaaaagcaagaaaactactagatagtccataaaaaa
tacaagataattgaaagcactaacattcactagaacaccattaacatttt
tagaggaatgtttgacataagcagactattcttttgaagtgctcatgcag
atttaccatgacagatcacattttacatggtagcacactcatagatcaaa
gagaataaacaatgttgagtatggactctgataaataaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125802302_125803433
seq2: B6Ng01-030C10.b_40_1155

seq1  GAATTCACAGCTCCATGGTGAGATGTTATGTTTTATGCTTTACCCAAAGC  50
      |||||||| ||||| |||||||||||||||||| |||||||||||  |||
seq2  GAATTCACTGCTCC-TGGTGAGATGTTATGTTTCATGCTTTACCC-TAGC  48

seq1  TCTTCTTTTGCTCCTTATTTCTCTAAGGGCTGGCTTCCCTGCTTTTGCTC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTCTTTTGCTCCTTATTTCTCTAAAGGCTGGCTTCCCTGCTTTTGCTC  98

seq1  ACGTCTGAGAAGTAAAAATATGATCCTTACCATAGCTGTTTTGGGCTAGA  150
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  ACGTCTGAAAAGTAAAAATATGATCCTTACCATAGCTGTTGTGGGCTAGA  148

seq1  GACCTAGACACATACACTTCTCAGAAGGAGAAATCTTTTGAACATTTGGT  200
      ||| || |||| | ||||||||||||||||||||||||||||| ||||||
seq2  GACGTAAACACGTTCACTTCTCAGAAGGAGAAATCTTTTGAACCTTTGGT  198

seq1  TGAATTAGATAATTTTTACAAGTCTCAAGCAAACATTTTTGTTCTTATTT  250
      ||||||||||||||||||| | |||  ||| ||||||||||||||| |||
seq2  TGAATTAGATAATTTTTACCACTCTTGAGCCAACATTTTTGTTCTTTTTT  248

seq1  CTTACGATGGAAAACAATTAATTTCAATATTTAAAAGTAATAGTAATTAT  300
      ||||| |||||||||||||||||| ||||||||||| |||||||||||||
seq2  CTTACTATGGAAAACAATTAATTTGAATATTTAAAATTAATAGTAATTAT  298

seq1  TCCCCTTTTCACTTTTATTGCTACTCTTTGGAAGCAGGCTTCTCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTTCACTTTTATTGCTACTCTTTGGAAGCAGGCTTCTCAGGGCT  348

seq1  AACCTGCCCCCCACACAGAGGCCAGGGCATTCTCATGGGCCAGAGATGTC  400
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AACCTGCCCCCCACACAGAGGCCATGGCATTCTCATGGGCCACAGATGTC  398

seq1  ACCCAAGACCATTCTGGGAGCATGGCAAAATGAAATCAAGATAAAATGTT  450
       |||  |||| ||||||||||||||| |||||||||||||||||||||||
seq2  GCCCGGGACCCTTCTGGGAGCATGGCGAAATGAAATCAAGATAAAATGTT  448

seq1  GGAGCCAGCTAGAAATCTGGGCATTCTAAAACGCAAAATATACGAAATGT  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGCTAGAAATCTGGGCATTCTAAAACGCAAAATATACGAAATGT  498

seq1  ATACAAAGCTGCTGTTGATTTCGTTATTTTTTGAAGATAATTGTCTTTCT  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATACAAAGCTGCTGATGATTTCGTTATTTTTTGAAGATAATTGTCTTTCT  548

seq1  ATTTATGCTTGCAGCATCACCCAAGAAGCTGTGGTAGTTGATTTTCTCTC  600
      | |||||||||||||||||   ||||||||||||||||||||||||||||
seq2  ACTTATGCTTGCAGCATCA-GAAAGAAGCTGTGGTAGTTGATTTTCTCTC  597

seq1  ATCCTTTTGGCATTAAACCTAAGCAGGAACAGTGTATCAGCATAGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTGGCATTAAACCTAAGCAGGAACAGTGTATCAGCATAGTCATA  647

seq1  GCAGTCTCATTCCTACCAGACAGTGACCAGTACAGGGAAATAGTCATTTT  700
      |||||||||||||||||||||| |||||||||||||||||   |||||||
seq2  GCAGTCTCATTCCTACCAGACATTGACCAGTACAGGGAAA-CTTCATTTT  696

seq1  CCTTGAAGTCTTCCCTATATAACCTCACCCATTCCCAAATAATTTTATTA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTGAAGTCTTCCCTATATAACCTCACCCCTTCCCAAATAATTTTATTA  746

seq1  TTACTGGGCATCAATGTATCTGTGTTGCTATAACAAAATACCTGAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGGCATCAATGTATCTGTGTTGCTATAACAAAATACCTGAATCAA  796

seq1  GCTA-TTTATAGAAATTGTAAGAATCTCTTTCCTGTACTTCTGAAGGGTG  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTATAGAAATTGTAAGAATCTCTTTCCTGTACTTCTGAAGGGTG  846

seq1  ATAAGTTCAAGGTCAATGAGCTATCAGACTCTGTGGTTGTGCAGAGGGAA  899
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  ATAAGTTCAAGGTCAATGAGCTATCATACTCTGTGGCTGTGCAGAGGGAA  896

seq1  CTAGAAGGGCTGCAGTCTTCTAGTTTTTAAAAACACCTCCAAAGATAAAT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAAGGGCTGCAGTCTTCTAGTTTTTAAAAACACCTCCAAAGAT-AAT  945

seq1  GAATTGATCCATAAAGTTAGAGCCCTCATGACTTAATCACTTCTGGAAAA  999
      |||||||||||||||| ||||||||||||||||| ||||||||||| |||
seq2  GAATTGATCCATAAAG-TAGAGCCCTCATGACTT-ATCACTTCTGG-AAA  992

seq1  GTCTGATGTCTTAATACTGATTACTAGAGACTATGCTTCAGCATAAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTCTTAATACTGATTACTAGAGACTATGCTTCAGCATAAAATT  1042

seq1  TCCAAGATTGAAGCTTTGATACCATAGGACTGGCAGAACCCTATAGTTAC  1099
      ||||||| || ||| |||| |||||| |||| |||||  ||||||| |||
seq2  TCCAAGA-TGGAGC-TTGAAACCATA-GACT-GCAGA--CCTATAG-TAC  1085

seq1  TGT-CTGGTGTTTTCTCTTTGCTGTGCATGTTCT  1132
      ||| |||||| |||||||||||  ||||||||||
seq2  TGTCCTGGTG-TTTCTCTTTGC--TGCATGTTCT  1116

seq1: chr3_125943346_125944081
seq2: B6Ng01-030C10.g_67_802 (reverse)

seq1  CAAAAGAATAGTCTGCTTATGTCAAACATTCCTCTAAAAATGTTAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATAGTCTGCTTATGTCAAACATTCCTCTAAAAATGTTAATGGT  50

seq1  GTTCTAGTGAATGTTAGTGCTTTCAATTCTCTTCTATTTTTTATTGACTA  100
      |||||||||||||||||||||||||||| |||| |||||||||| |||||
seq2  GTTCTAGTGAATGTTAGTGCTTTCAATTATCTTGTATTTTTTATGGACTA  100

seq1  TCTAGTAGTTTTCTTGCTTTTCCACCCACAGTTGACAGTTTCTCTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAGTTTTCTTGCTTTTCCACCCACAGTTGACAGTTTCTCTTTGTA  150

seq1  GGTTTTATGGCCTTTGCCTTAGAGATTTTGAATCTCTGTGGTATTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGGCCTTTGCCTTAGAGATTTTGAATCTCTGTGGTATTTCATA  200

seq1  CTGGCACATCTTTTAGATAAATACACCACTTACCTGTTAACAATATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACATCTTTTAGATAAATACACCACTTACCTGTTAACAATATCTCT  250

seq1  CTTTGTCTAAAGTGAATTTGTCTTGGGAGTCCAAATTATCTGATAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTGTCTAAAGTGAATTTGTCTTGGGAGTCCAAATTATATGATAAAAGA  300

seq1  CTTTATCACTTGCATTTTTAAAATGCTATTTGTACAGTACATCATTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCACTTGCATTTTTAAAATGCTATTTGTACAGTACATCATTTTCA  350

seq1  TGACTTTGCTTTCACCTTCGTGATGTTATAAGTTTAAAGTATGTTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGCTTTCACCTTCGTGATGTTATAAGTTTAAAGTATGTTTCATG  400

seq1  AAAGAATCATAGACAGTAGAATCATTTTATTCTCCTGATTTCTTATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCATAGACAGTAGAATCATTTTATTCTCCTGATTTCTTATTTCT  450

seq1  TAGACTTTATTTTGATTCATTAATTTATTTTTTTAATTATTTTTAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGACTTTATTTTGATTCATTAATTTATTTTTTTAATTATTTTTAGTGTA  500

seq1  TACATTTTTTTAAGTTCTGTCATTACTTATTTACTTCGCCTAGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTTTAAGTTCTGTCATTACTTATTTACTTCGCCTAGTTTTCTT  550

seq1  TTCTGTGTCCTAAAGCTTTTAAGTAGCAGGTACCTAACTATTATTATTTG  600
      ||  | ||||||||||||| |||||||||||||||||||||||||||| |
seq2  TTTCGCGTCCTAAAGCTTTCAAGTAGCAGGTACCTAACTATTATTATTCG  600

seq1  TGAATGTGTATAACATGTGTGTACACATGTATGTATCTGTGTGTCTGTAT  650
       ||| | |||||||| ||||||||||||||||||||  | | ||||||||
seq2  GGAAGGGGTATAACACGTGTGTACACATGTATGTATAAGCGCGTCTGTAT  650

seq1  GAGAGAGACTGAGGATGTATGAGACATGCATGTGCAGGTCAGAGGACTAC  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCCTGAGGATGTATGAGACATGCATGTGCAGGTCAGAGGACTAC  700

seq1  TTTCTGGAGGTGATACTATCTCTCGAGCTTGAATTC  736
      |||| |||||| ||||||||||||||||  ||||||
seq2  TTTCCGGAGGTCATACTATCTCTCGAGCAAGAATTC  736