BAC Information

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BAC

Clone NameB6Ng01-030C23
Chromosome3 (Build37)
Map Location 39,044,330 - 39,181,076
singlet/doubletdoublet
Overlap geneLOC100041432
Upstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C23.bB6Ng01-030C23.g
ACCDH860166DH860167
length9661,074
definitionDH860166|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C23, 5' end.DH860167|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,044,330 - 39,045,066)(39,180,025 - 39,181,076)
sequence
gaattctattaagtgagttagagctgatgagacctcttggtttacagaaa
tacctgcataaaacgagtaataaaattgaccacattttaaactctaaatg
gcatttccccccttcataaatattttcagcctttcgtttttcttcacagg
atcacaatcttgtttcacacagagggaaattaacactatcaaaaattgaa
atgcgcaggcctttgccgtggaagtctgtgaatctggaattgagaaagag
gaacactcctccattgttggtgggattgcaggcttgtacaaccactctgg
aaatcagtctggcggttcctcagaaaattggacatagtactaccggagga
tccagcaatacctctcctgggcatatatccagaagaagccccaactggta
agaaggacacatgctccactatgttcatagcagccttatttataatagcc
agaaactggaaagaacccagatgcccctcaacagaggaatggatacagaa
aatgtggtacatctacacaatggagtactactcagctattaaaaagaatg
aatttatgaaattcctagccaaatggatggacctggagagcatcatcctg
agtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgat
aagtggatactagcccaaaacctaggatacccacgatataagatacaatt
tgctaaacacatgaaactcaagaaaaatgaagactgaagtgtggacacta
tgcccctccttagaagtgggaacaaaacacccatggaaggagttacagaa
acaaagtttggagctgagatgaaaggatggaccatgtagagactgccata
tccagggatccaccccataatcagcatccaaacgctgacaccattgcata
tactagcagatttatcgaaagacccagatgtagctgtctcttgtgagact
atgccgggcctagcaa
gaattctcacctgaggaataccgaatgccagagaaacacctgaaaaaaat
attcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgaga
ttccacttcactccagtcagaatggctaagatcaaaaactcaggtgacag
cagatgctggcgaggatgtggagaaaggggaacactcctccatttttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccagaggatcccgcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttgtttataatagccagaagctggaaagaacccaga
tgctcctcaacagaggaattgatacagaaaatgtggtacatttacacaat
ggaatactactcagctatttaaaaaatgaatttatgaaatttctaggcaa
atggatggacctggagggtatcatcctgagtgaggaagttctatattctt
agcagttagaatgaataatgtaggtttttaagtttaaaaatgaataaata
agctaagacaaaagtttaaaaattttatatatatgtgtgtgtatacatat
acacatatacacatatatatacatatacacacatgtatacataagcatat
atatatatgcatttgtatactatcaagcccagattgttcaacctaagtag
tttcatttccctgatatggcaagctggagattttcctcagcccaatacca
aaacagaaacttctattcactgtcttattacatgaagatcactgtctatt
gactttctctacaatcacattattcttgtgacatcatttgggtcacacat
catttcctataaatatccctggaataattactgattatttataaagttag
aatcaataaatctaacaaattgcattttggttgagaaaaatgtagattta
tctatgtgtcggcaaatgactcaacagcatactgaaagctggcttgagag
aataccacagattccaatagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39044330_39045066
seq2: B6Ng01-030C23.b_43_779

seq1  GAATTCTATTAAGTGAGTTAGAGCTGATGAGACCTCTTGGTTTACAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAAGTGAGTTAGAGCTGATGAGACCTCTTGGTTTACAGAAA  50

seq1  TACCTGCATAAAACGAGTAATAAAATTGACCACATTTTAAACTCTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCATAAAACGAGTAATAAAATTGACCACATTTTAAACTCTAAATG  100

seq1  GCATTTCCCCCCTTCATAAATATTTTCAGCCTTTCGTTTTTCTTCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCCCCTTCATAAATATTTTCAGCCTTTCGTTTTTCTTCACAGG  150

seq1  ATCACAATCTTGTTTCACACAGAGGGAAATTAACACTATCAAAAATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATCTTGTTTCACACAGAGGGAAATTAACACTATCAAAAATTGAA  200

seq1  ATGCGCAGGCCTTTGCCGTGGAAGTCTGTGAATCTGGAATTGAGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCAGGCCTTTGCCGTGGAAGTCTGTGAATCTGGAATTGAGAAAGAG  250

seq1  GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG  300

seq1  AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA  350

seq1  TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAAGCCCCAACTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAAGCCCCAACTGGTA  400

seq1  AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC  450

seq1  AGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA  500

seq1  AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG  550

seq1  AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGAGCATCATCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGAGCATCATCCTG  600

seq1  AGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGAT  650

seq1  AAGTGGATACTAGCCCAAAACCTAGGATACCCACGATATAAGATACAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATACTAGCCCAAAACCTAGGATACCCACGATATAAGATACAATT  700

seq1  TGCTAAACACATGAAACTCAAGAAAAATGAAGACTGA  737
      |||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACACATGAAACTCAAGAAAAATGAAGACTGA  737

seq1: chr3_39180025_39181076
seq2: B6Ng01-030C23.g_101_1139 (reverse)

seq1  CTTGCTATTGGGATACTGGTGTATTCT-TCAAAGCAGCTTTTCAGTAATG  49
      ||||||||||| || |||  ||||||| ||||  |||| ||||||| |||
seq2  CTTGCTATTGGAAT-CTGTGGTATTCTCTCAAGCCAGC-TTTCAGT-ATG  47

seq1  CTGTTGAGTTCATTTTGCAGAGCACATAGATAAAATTCACATTTTTCTCA  99
      |||||||| ||| ||||| || ||||||||| ||||  ||||||||||||
seq2  CTGTTGAG-TCA-TTTGCCGA-CACATAGAT-AAATCTACATTTTTCTCA  93

seq1  ACCAAAATTGCAATTTTGTAGATTTATTGATTCTAAAACTTTATAAATAA  149
      ||||||| ||||||||  ||||||||||||||||  ||||||||||||||
seq2  ACCAAAA-TGCAATTTGTTAGATTTATTGATTCT--AACTTTATAAATAA  140

seq1  TCAGTAATTATTTCCAGGGATATTTATAGGAAATGATGTGTGACCCAAAT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTA-TTCCAGGGATATTTATAGGAAATGATGTGTGACCCAAAT  189

seq1  GATGTCACAAGAATAATGTGATTGTAGAGAAAGTCAATAAGACAGTGATC  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGTCACAAGAATAATGTGATTGTAGAGAAAGTCAAT-AGACAGTGATC  238

seq1  -TCATGTGAATAAGGACAGTGAATAGAAGTTTCTGTTTTGGTATTGGGGC  298
       |||||| ||||| ||||||||||||||||||||||||||||||| ||||
seq2  TTCATGT-AATAA-GACAGTGAATAGAAGTTTCTGTTTTGGTATT-GGGC  285

seq1  TGAGGAAAATCTCCAGCTTGCCATATCAGGGAAATGAAACTACTTAGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAATCTCCAGCTTGCCATATCAGGGAAATGAAACTACTTAGGTT  335

seq1  GAACAATCTGGGCTTGATAGTATACAAATGCATATATATATATGCTTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCTGGGCTTGATAGTATACAAATGCATATATATATATGCTTATG  385

seq1  TATACATGTGTGTATATGTATATATATGTGTATATGTGTATATGTATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTGTGTATATGTATATATATGTGTATATGTGTATATGTATACA  435

seq1  CACACATATATATAAAATTTTTAAACTTTTGTCTTAGCTTATTTATTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATAAAATTTTTAAACTTTTGTCTTAGCTTATTTATTCAT  485

seq1  TTTTAAACTTAAAAACCTACATTATTCATTCTAACTGCTAAGAATATAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTTAAAAACCTACATTATTCATTCTAACTGCTAAGAATATAGA  535

seq1  ACTTCCTCACTCAGGATGATACCCTCCAGGTCCATCCATTTGCCTAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCACTCAGGATGATACCCTCCAGGTCCATCCATTTGCCTAGAAA  585

seq1  TTTCATAAATTCATTTTTTAAATAGCTGAGTAGTATTCCATTGTGTAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAATTCATTTTTTAAATAGCTGAGTAGTATTCCATTGTGTAAAT  635

seq1  GTACCACATTTTCTGTATCAATTCCTCTGTTGAGGAGCATCTGGGTTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACATTTTCTGTATCAATTCCTCTGTTGAGGAGCATCTGGGTTCTT  685

seq1  TCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCAT  735

seq1  GTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGG  785

seq1  TATTGCGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCC  835

seq1  AGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAAAAATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAAAAATGG  885

seq1  AGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  935

seq1  GTTTTTGATCTTAGCCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGATCTTAGCCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTG  985

seq1  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAATATTTTTTTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAATATTTTTTTCAG  1035

seq1  GTGT  1052
      ||||
seq2  GTGT  1039