BAC Information

Click to search

BAC

Clone NameB6Ng01-030D06
Chromosome3 (Build37)
Map Location 154,703,158 - 154,704,331
singlet/doubletsinglet
Overlap geneTnni3k
Upstream geneSlc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030D06.bB6Ng01-030D06.g
ACCDH860178DH860179
length1,1591,155
definitionDH860178|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D06, 5' end.DH860179|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccgcagctgaatgtgagtaaaacaagctggaaacaagatttag
tttaccccaaattccttgctacaacatggtagcaattcaataaaggtttg
ataggaaaagaagaaaaatcataactcaaggcacttttcaaatacattga
caaaaatagtaggtggtaaaatacagcactaggtgagggagttgcagcat
gggtgatgggtggctcacagcattagatctgcgagttacaccattactag
ttgtgatacgtggctcacagcattagatgggtggctgacatgcctgggag
ggggtggtacgtgggttactcagatgctatctgacagcattcctacccct
ttcttggttggtaggttggacactagagatctgttcttatgtcccagaag
atttacctaacgatcacagagatgtttggtcacataaagaagagggcaat
aaatggctttttatggaactaaagatgctccaaagtaaattttcctctgg
acttcaaacattccaacttgtccatctcactgaggatctagtcagcagat
gtttcagtgagtggtgcagtacttcatgaacttttcctcacagaagccgg
aggacaacatgaagccacaagtccctacttacagcttgtgggtctcatgg
atggaagcagagtgtcaggcttggtggcaagcactgacaataccatcttt
ccaggaccattgatgcatctacaaccttaacaatgtaaaatgaaagttaa
cttttatccacatactccaaagctggctcttctctcagtttctcacttaa
gttaaattcatgtggttaggtcaaaagaaatcccatcccttgctgttcct
ggagttcatgtcagttatatagttctgtccattaacagaggcccccttca
gccacccaacagcactattcatgccctatgatgtcattttcagggtaaat
gatacttaagaaagcctgtcttctcagcccagaggaacactttctataag
gactggacacatttcctgcatactttttgagacgagatcagcttcttgct
tgcttgcaagcaaggacatgtgcatgtaaagtcttagcaaattgtaccgg
aagtcctgcctcctagagaacgcagggcccagtgactaatcacctgaaga
ctggggaga
gaattctcaccctaggaataccgaaaggctgagaaacacctgaaaatatg
ctcagcatccttaatcatcagagaaatgcaaattaaaacaaacctgagat
tccatctcacaccagtcagaatggataagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggaaaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagtctggcggttcctca
gacttggacatagtactaccggaggatcccgcaatacctctcctgggcat
atatccagaagatgtcccaaccggtaagaaggacacatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaggaatgaatttacgaaattcctaggcaaat
ggatggatctggagggtatcatcctgagtgaggtaacacaatcacaaaag
aaagcaaatgaaatgtactcaatgataagtggatattagcccagaaactt
agtatagcgagatataaggtacaagatgcaaaacacatgaaactgaagaa
gaatgaagaccaaagtgtggacactgtgctccttcttagaattggaaata
atcatccatggaaggagttacagagacaaattttggagctgagacaaaag
gatggaccatctagagactgccatatccagggatccatcccataattagc
ctccaaacgatgacaccatggcatacaccagcaagcctttgttgcaagga
ccctgatatagctgtcccttgtgagactaggccggggcctagcaacacag
aagtggatgttcacagtcactattggatggatcacatggccccatggagg
agctagagaagtatcagagctaagagatctgcaccttatcagtggacaca
tcatgactaccagtacccagagctctttgactctagctgatattgttcaa
agatgctactcggcctcaatggaaaggagagccatgtcaggcaaatctta
tagtcccagttatggaagctagggccaaaaaatgtatgggtgggtatgat
atggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154703158_154704331
seq2: B6Ng01-030D06.b_45_1203

seq1  GAATTCACCGCAGCTGAATGTGAGTAAAACAAGCTGGAAACAAGATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGCAGCTGAATGTGAGTAAAACAAGCTGGAAACAAGATTTAG  50

seq1  TTTACCCCAAATTCCTTGCTACAACATGGTAGCAATTCAATAAAGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCAAATTCCTTGCTACAACATGGTAGCAATTCAATAAAGGTTTG  100

seq1  ATAGGAAAAGAAGAAAAATCATAACTCAAGGCACTTTTCAAATACATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAAGAAGAAAAATCATAACTCAAGGCACTTTTCAAATACATTGA  150

seq1  CAAAAATAGTAGGTGGTAAAATACAGCACTAGGTGAGGGAGTTGCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGTAGGTGGTAAAATACAGCACTAGGTGAGGGAGTTGCAGCAT  200

seq1  GGGTGATGGGTGGCTCACAGCATTAGATCTGCGAGTTACACCATTACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGGGTGGCTCACAGCATTAGATCTGCGAGTTACACCATTACTAG  250

seq1  TTGTGATACGTGGCTCACAGCATTAGATGGGTGGCTGACATGCCTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATACGTGGCTCACAGCATTAGATGGGTGGCTGACATGCCTGGGAG  300

seq1  GGGGTGGTACGTGGGTTACTCAGATGCTATCTGACAGCATTCCTACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTACGTGGGTTACTCAGATGCTATCTGACAGCATTCCTACCCCT  350

seq1  TTCTTGGTTGGTAGGTTGGACACTAGAGATCTGTTCTTATGTCCCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTGGTAGGTTGGACACTAGAGATCTGTTCTTATGTCCCAGAAG  400

seq1  ATTTACCTAACGATCACAGAGATGTTTGGTCACATAAAGAAGAGGGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTAACGATCACAGAGATGTTTGGTCACATAAAGAAGAGGGCAAT  450

seq1  AAATGGCTTTTTATGGAACTAAAGATGCTCCAAAGTAAATTTTCCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTTTTATGGAACTAAAGATGCTCCAAAGTAAATTTTCCTCTGG  500

seq1  ACTTCAAACATTCCAACTTGTCCATCTCACTGAGGATCTAGTCAGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACATTCCAACTTGTCCATCTCACTGAGGATCTAGTCAGCAGAT  550

seq1  GTTTCAGTGAGTGGTGCAGTACTTCATGAACTTTTCCTCACAGAAGCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTGAGTGGTGCAGTACTTCATGAACTTTTCCTCACAGAAGCCGG  600

seq1  AGGACAACATGAAGCCACAAGTCCCTACTTACAGCTTGTGGGTCTCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACATGAAGCCACAAGTCCCTACTTACAGCTTGTGGGTCTCATGG  650

seq1  ATGGAAGCAGAGTGTCAGGCTTGGTGGCAAGCACTGACAATACCATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCAGAGTGTCAGGCTTGGTGGCAAGCACTGACAATACCATCTTT  700

seq1  CCAGGACCATTGATGCATCTACAACCTTAACAATGTAAAATGAAAGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCATTGATGCATCTACAACCTTAACAATGTAAAATGAAAGTTAA  750

seq1  CTTTTATCCACATACTCCAAAGCTGGCTCTTCTCTCAGTTTCTCACTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCACATACTCCAAAGCTGGCTCTTCTCTCAGTTTCTCACTTAA  800

seq1  GTTAAATTCATGTGGTTAGGTCAAAAGAAATCCCATCCCTTGCTGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCATGTGGTTAGGTCAAAAGAAATCCCATCCCTTGCTGTTCCT  850

seq1  GGAGTTCATGTCAGTTATATAGTTCTGTCCATTAACAGAGGCCCCCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCATGTCAGTTATATAGTTCTGTCCATTAACAGAGGCCCCCTTCA  900

seq1  GCCACCCAACAGCACTATTCATGCCCTATGATGTCATTTTCAGGGTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAACAGCACTATTCATGCCCTATGATGTCATTTTCAGGGTAAAT  950

seq1  GATACTTAAGAAAGCCTGTCTTCTCAGCCCAGAGGAACACTTTCTATAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTAAGAAAGCCTGTCTTCTCAGCCCAGAGGAACACTTTCTATAAG  1000

seq1  GAACTGGACACATTTCCTGCATACTTTTTGAGGACAGAGAATCCAGTCTT  1050
      | ||||||||||||||||||||||||||||| ||| ||||   ||| |||
seq2  G-ACTGGACACATTTCCTGCATACTTTTTGA-GAC-GAGA--TCAG-CTT  1044

seq1  CCTTGCTTGCTTGCAAAGCAAGGACATGTGCAATGTAAAGTCTTGAGCAG  1100
       ||||||||||||| |||||||||||||||| |||||||||||| |||| 
seq2  -CTTGCTTGCTTGC-AAGCAAGGACATGTGC-ATGTAAAGTCTT-AGCAA  1090

seq1  ATTGTAACCTGAAGTCCTGCCTTCCTAAGAGACTGCAAGGCCCAGTGACT  1150
      ||||| ||| ||||||||||| |||| |||||  ||| ||||||||||||
seq2  ATTGT-ACCGGAAGTCCTGCC-TCCT-AGAGAACGCAGGGCCCAGTGACT  1137

seq1  AATACAGCTGAATGACTGGGGAGA  1174
      ||| || ||||| |||||||||||
seq2  AAT-CACCTGAA-GACTGGGGAGA  1159