BAC Information

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BAC

Clone NameB6Ng01-030D23
Chromosome3 (Build37)
Map Location 51,848,106 - 51,973,404
singlet/doubletdoublet
Overlap geneLOC433587
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030D23.bB6Ng01-030D23.g
ACCDH860212DH860213
length1,0851,028
definitionDH860212|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D23, 5' end.DH860213|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,848,106 - 51,849,204)(51,972,366 - 51,973,404)
sequence
gaattcatagttttattgatttctctcactctgactggaaagggctacaa
gccgcagggaggtgtcgcctctgctgcttattgctatatctgaccgggaa
actcagttttggaatagaaacttaatagaaaagaagaaaaaggaaaaaaa
aaaatcagagggttaattgcctgcctggtgggaaagatggcaggtctggc
tgagtcgaggtcctttgtggtcaccaaacccttatgactgacagttatca
cagtcacctcctactgcaaagcaacttttacagcttttatatctccaaat
gaaaccaaagatctgatctgcctaccagagtcaaggacacaaatctctca
aactctcctgggggcaagaggggaatggagcctggagctgggaggagaga
ctaggcaaacttgcctttctccacccactcactctcatccctaaagtaga
ataaaataagctgggaggccgggtaaggcctgttaacccagaagcctgcc
tccaattaatgtgatattgctcctttaaaaccctgtacgagaacggcccg
gctgctgctgatcccaaggctgcggcacggtaattgtcacttagccactt
aactccccgcagcccggctcacacgctccttgaggtttatctctcagcca
attactgctgtcatttgcgtttcaatgtgtggaatcagaggccaggccca
ggaatacagcacaagagaaacccccttgggggacaggagcctactaagac
ctagtggctgatggggtgagacacaaacaacccaccagggtgggagtggc
cgaggggcttcctcgaagggaggcccactccggctgggctgtggtccttt
tcgggcctcttcactgggcaaccgagaagacgaaacatctcgctaaaaca
tcgcgtcggttcaaataatgatggcgataataaaaagcaacagaaaatta
gctgtggagcgatgtgacaggagcaagtaatgtaaagaagtcgtacaatg
aacgattactagtcaggacagcagaagagaacgaagccaagcagaaacct
ctcattttaggcccaactgctctttcagccaacga
gaattcagagtatctgagaagagtgtgaggacacagtctcccgtaaagag
catgaggttatgacctaacacctaggaaagggagactcactctgaagctt
tcatttgctgtgcagttgtgatgtaaacctttcttcccatgattaacaga
gcctgactgcatcaggcacggcctcctccgcggcattgacctctggtttg
cctccattagagcaggttaccagaagggtagccattgaccagaaaagccg
ccctttcctctgacgttaatatccgtaagtgtaagatgctgtataaagtc
ctgttattacctaattagctgtagtggataatgattttcatattctaagc
ctgaagatgggaagtaaaattcagcgctggcataggtagttttatttaaa
atcttcatgcacaatagggcatatttccccaacaaatagttccaggattc
ctgctacctttgagtcatcttcaaaacacacctaaggcattaatctattt
tatagacctggaactttctttattctgtttaaagttttacttgttttcaa
attataaaacttaaaagtgccccaaaccacaaaagcttctttattttggc
acttacaccaagtaagctgatttttctccccctcaggatttttatacaat
tcttgtcttgagttgatgcttgttaactgaagtgattttttttttctgac
caacttttaatttcctgaaagttgaggcttacggtacagagaaggggcta
aaaaaatctaaatcagctctaacgaggtagatgggtgaatgagttaacat
ccactctattgtctgaagagtctatgtcaacagcctttgcattctctggt
aaaactcccaactatgagatgtggttatctgaacacacaaacgtattctt
caggtagtatgctagactacagtctaatttattttatgtaatattctttt
taataataatgtctattgagacattctgtggtagtctgcaagcttgtctc
atggtagtgctttaaatccgtttcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51848106_51849204
seq2: B6Ng01-030D23.b_49_1133

seq1  GAATTCATAGTTTTATTGATTTCTCTCACTCTGACTGGAAAGGGCTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTTATTGATTTCTCTCACTCTGACTGGAAAGGGCTACAA  50

seq1  GCCGCAGGGAGGTGTCGCCTCTGCTGCTTATTGCTATATCTGACCGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGGGAGGTGTCGCCTCTGCTGCTTATTGCTATATCTGACCGGGAA  100

seq1  ACTCAGTTTTGGAATAGAAACTTAATAGAAAAGAAGAAAAAGGAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTTGGAATAGAAACTTAATAGAAAAGAAGAAAAAGGAAAAAAA  150

seq1  AAAATCAGAGGGTTAATTGCCTGCCTGGTGGGAAAGATGGCAGGTCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAGGGTTAATTGCCTGCCTGGTGGGAAAGATGGCAGGTCTGGC  200

seq1  TGAGTCGAGGTCCTTTGTGGTCACCAAACCCTTATGACTGACAGTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGAGGTCCTTTGTGGTCACCAAACCCTTATGACTGACAGTTATCA  250

seq1  CAGTCACCTCCTACTGCAAAGCAACTTTTACAGCTTTTATATCTCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCTCCTACTGCAAAGCAACTTTTACAGCTTTTATATCTCCAAAT  300

seq1  GAAACCAAAGATCTGATCTGCCTACCAGAGTCAAGGACACAAATCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAAGATCTGATCTGCCTACCAGAGTCAAGGACACAAATCTCTCA  350

seq1  AACTCTCCTGGGGGCAAGAGGGGAATGGAGCCTGGAGCTGGGAGGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCTGGGGGCAAGAGGGGAATGGAGCCTGGAGCTGGGAGGAGAGA  400

seq1  CTAGGCAAACTTGCCTTTCTCCACCCACTCACTCTCATCCCTAAAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAAACTTGCCTTTCTCCACCCACTCACTCTCATCCCTAAAGTAGA  450

seq1  ATAAAATAAGCTGGGAGGCCGGGTAAGGCCTGTTAACCCAGAAGCCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAGCTGGGAGGCCGGGTAAGGCCTGTTAACCCAGAAGCCTGCC  500

seq1  TCCAATTAATGTGATATTGCTCCTTTAAAACCCTGTACGAGAACGGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAATGTGATATTGCTCCTTTAAAACCCTGTACGAGAACGGCCCG  550

seq1  GCTGCTGCTGATCCCAAGGCTGCGGCACGGTAATTGTCACTTAGCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGATCCCAAGGCTGCGGCACGGTAATTGTCACTTAGCCACTT  600

seq1  AACTCCCCGCAGCCCGGCTCACACGCTCCTTGAGGTTTATCTCTCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCGCAGCCCGGCTCACACGCTCCTTGAGGTTTATCTCTCAGCCA  650

seq1  ATTACTGCTGTCATTTGCGTTTCAATGTGTGGAATCAGAGGCCAGGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCTGTCATTTGCGTTTCAATGTGTGGAATCAGAGGCCAGGCCCA  700

seq1  GGAATACAGCACAAGAGAAACCCCCTTGGGGGACAGGAGCCTACTAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAGCACAAGAGAAACCCCCTTGGGGGACAGGAGCCTACTAAGAC  750

seq1  CTAGTGGCTGATGGGGTGAGACACAAACAACCCACCAGGGTGGGAGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCTGATGGGGTGAGACACAAACAACCCACCAGGGTGGGAGTGGC  800

seq1  CGAGGGGCTTCCTCGAAGGGGAGGCCCACTCCGGCTGGGCTGTGGTCCTT  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGAGGGGCTTCCTCGAA-GGGAGGCCCACTCCGGCTGGGCTGTGGTCCTT  849

seq1  TTCGGGCCTCTTCACTGGGGCAACCGAGAAGACGAAACATCTCGCTTAAA  900
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TTCGGGCCTCTTCACT-GGGCAACCGAGAAGACGAAACATCTCGC-TAAA  897

seq1  ACATCGCGTCGGTTCCAAATAATGATGGCGATAATTAAAAAGCAACAGAA  950
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ACATCGCGTCGGTT-CAAATAATGATGGCGATAA-TAAAAAGCAACAGAA  945

seq1  ATTTAGCTGTGGAGCGATTGTGGACAGGAGGCAAGGTAATGTACAGAAGC  1000
      | ||||||||||||||| ||| ||||||| |||| |||||||| ||||| 
seq2  AATTAGCTGTGGAGCGA-TGT-GACAGGA-GCAA-GTAATGTAAAGAAGT  991

seq1  CGGTCACAATGAACGATTACTAAGTCAGGACAAGCAAGAGAGACAGAAGC  1050
      ||   |||||||||||||||| ||||||||| ||||  |||||  |||||
seq2  CG--TACAATGAACGATTACT-AGTCAGGAC-AGCAGAAGAGAACGAAGC  1037

seq1  CAAAGCAGAGAACCCTCATTTTAGGCCACACTGCTCTTTCAAGCAACGA  1099
      | ||||||| | | |||||||||||||  ||||||||||||  ||||||
seq2  C-AAGCAGAAACCTCTCATTTTAGGCCCAACTGCTCTTTCAGCCAACGA  1085

seq1: chr3_51972366_51973404
seq2: B6Ng01-030D23.g_66_1093 (reverse)

seq1  AACTGAAAACAGAATTCTTAAAGCACTACCCATGAGACAAGCCTTGCAGA  50
      ||||| |||| ||    ||||||||||| |||||||||||| ||||||||
seq2  AACTG-AAACGGA---TTTAAAGCACTA-CCATGAGACAAG-CTTGCAGA  44

seq1  CTTACCACAG-ATGTCTTCAATAGACATTATTATTAAAAAAGAATATTAC  99
      | |||||||| ||||| |||||||||||||||||| ||||||||||||||
seq2  C-TACCACAGAATGTC-TCAATAGACATTATTATT-AAAAAGAATATTAC  91

seq1  ATAAAATAAATTTAGACTGTTAGTCTAGCATTACTA-CTGAAGGAATACG  148
      |||||||||| |||||||| |||||||||| ||||| ||||| |||||||
seq2  ATAAAATAAA-TTAGACTG-TAGTCTAGCA-TACTACCTGAA-GAATACG  137

seq1  TTTGTGTGTTCAGATAACCACATCTCATAGTTGGGAGTTTTACCAGGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TTTGTGTGTTCAGATAACCACATCTCATAGTTGGGAGTTTTACCAGAGAA  187

seq1  TGCAAAGGCTGTTGACAATAGACTCTTCAGACAATAGAGTGGATGTTAAC  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCAAAGGCTGTTGAC-ATAGACTCTTCAGACAATAGAGTGGATGTTAAC  236

seq1  TCATTCACCCATCTACCTCGTTAGAGCTGATTTAGATTTTTTTAGCCCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACCCATCTACCTCGTTAGAGCTGATTTAGATTTTTTTAGCCCCT  286

seq1  TCTCTGTACCGTAAGCCTCAACTTTCAGGAAATTAAAAGTTGGTCAG-AA  347
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCTGTACCGTAAGCCTCAACTTTCAGGAAATTAAAAGTTGGTCAGAAA  336

seq1  AAAAAAATCACTTCAGTTAACAAGCATCAACTCAAGACAAGAATTGTATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCACTTCAGTTAACAAGCATCAACTCAAGACAAGAATTGTATA  386

seq1  AAAATCCTGAGGGGGAGAAAAATCAGCTTACTTGGTGTAAGTGCCAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGAGGGGGAGAAAAATCAGCTTACTTGGTGTAAGTGCCAAAAT  436

seq1  AAAGAAGCTTTTGTGGTTTGGGGCACTTTTAAGTTTTATAATTTGAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTTTTGTGGTTTGGGGCACTTTTAAGTTTTATAATTTGAAAAC  486

seq1  AAGTAAAACTTTAAACAGAATAAAGAAAGTTCCAGGTCTATAAAATAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACTTTAAACAGAATAAAGAAAGTTCCAGGTCTATAAAATAGAT  536

seq1  TAATGCCTTAGGTGTGTTTTGAAGATGACTCAAAGGTAGCAGGAATCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTTAGGTGTGTTTTGAAGATGACTCAAAGGTAGCAGGAATCCTG  586

seq1  GAACTATTTGTTGGGGAAATATGCCCTATTGTGCATGAAGATTTTAAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTTGTTGGGGAAATATGCCCTATTGTGCATGAAGATTTTAAATA  636

seq1  AAACTACCTATGCCAGCGCTGAATTTTACTTCCCATCTTCAGGCTTAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCTATGCCAGCGCTGAATTTTACTTCCCATCTTCAGGCTTAGAA  686

seq1  TATGAAAATCATTATCCACTACAGCTAATTAGGTAATAACAGGACTTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATCATTATCCACTACAGCTAATTAGGTAATAACAGGACTTTAT  736

seq1  ACAGCATCTTACACTTACGGATATTAACGTCAGAGGAAAGGGCGGCTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCTTACACTTACGGATATTAACGTCAGAGGAAAGGGCGGCTTTT  786

seq1  CTGGTCAATGGCTACCCTTCTGGTAACCTGCTCTAATGGAGGCAAACCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAATGGCTACCCTTCTGGTAACCTGCTCTAATGGAGGCAAACCAG  836

seq1  AGGTCAATGCCGCGGAGGAGGCCGTGCCTGATGCAGTCAGGCTCTGTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATGCCGCGGAGGAGGCCGTGCCTGATGCAGTCAGGCTCTGTTAA  886

seq1  TCATGGGAAGAAAGGTTTACATCACAACTGCACAGCAAATGAAAGCTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAAGAAAGGTTTACATCACAACTGCACAGCAAATGAAAGCTTCA  936

seq1  GAGTGAGTCTCCCTTTCCTAGGTGTTAGGTCATAACCTCATGCTCTTTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTCTCCCTTTCCTAGGTGTTAGGTCATAACCTCATGCTCTTTAC  986

seq1  GGGAGACTGTGTCCTCACACTCTTCTCAGATACTCTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGTGTCCTCACACTCTTCTCAGATACTCTGAATTC  1028