BAC Information

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BAC

Clone NameB6Ng01-031D05
Chromosome3 (Build37)
Map Location 28,423,078 - 28,584,090
singlet/doubletdoublet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D05.bB6Ng01-031D05.g
ACCDH860885DH860886
length1,032968
definitionDH860885|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D05, 5' end.DH860886|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,423,078 - 28,424,115)(28,583,481 - 28,584,090)
sequence
gaattctctcgggatctggaaaattatctcagaattgaccttcagaagtc
actgaggttgtaaaatgaagtggttggacttcatggttctctgccaagac
ctatgctctgtgccatgtgaagaagactgaaatcagggctgactccatgc
ttctgtcatatctaggagaggtggagaataaagcacattcttggcaaaag
ttatacacgtgtgtgtttgcatatgtgtgcatgtgtgaatacatatgtgt
atatgcatgtgcatatgtgtttgtatacatgcctgtgtatgtgtgcatga
gaggggggagagagagatgttggaactagagcttctcataaactccatta
ctaagtaatatttctacctcaacactgcaaagaaacaatattgtgtttca
tagtaatagacaactggcaaaaatctatagcaatcaaccatgtgaattgc
gaaatgtgtcaggactcagttcttagaaaacaaccttttttacttagaca
gacatagttattcaagtaatccaagcatttatttttataatctattcaca
ttataccatgctctttttagaatccatccttcaggccccaagccagtccc
catctgcttaagcacacttctctcaccgaattcaatttagcctcctttct
ttcttcccaagtggtaggaatagtttctgacccagttgttcagaggatac
tgatgatttttaaatctctgatttctttcagtatcctgtctgacacttcc
attactgcctccttccttggaacaacacgttgtctggagggtagactgtc
tctttgttttgtggtacaaacttgagcaaaatgacttggcactgtttcat
cagaggccctagagcacctatgcccattgcctttcaagctccttctgccc
gtgacattaccacgcattgaacatgacctctagacagagtggtcatgcta
gaggcagtcagctatatatattttgaggttctggtactggcagctttcca
tttgttatgaaactaacggtcacattcaggtc
gaattctgctgttcttgtctttaaactcatgagccataacttaggaagca
catagataaagaatggtactgaacatttcagagatgctccaagccatcaa
tccccttgtgtgtgtaattatgttgaaaaggacataatatgttcaatttt
acagcatattaatctctattttagctaagcagaaattatcatatgagtac
tactaggtgttgttggtattttattttaaaatgaggcaagaatagataac
ataaaatctatactctttaaaatacttatttttaaaatttagaatgcaag
atatttgtagtatctttaggatacttcaaatagtttgttttaatagattt
tcctttccctttatctcttcaaaaccctttcctcccaatttcttcctgca
actccacttctccatttctcttcttcttttgtgtcccatgggttcctttg
ttatttttattcatcagctatatgtcttctactcttggtctcctttctag
tttctgaggctttatttatattcttacacacacacacacacacacacaca
cacacacacaggctcagatttttcaaaacctacttttaataaggttctta
aattcttcatcctcccttctagcacaccacccaccagaggcagtagaaag
ggaaggttagtagagaaaagcagggtgtgaacctgttcagaaacagttct
ttggggcaattccaatctttggggcaggatatcagcagtttagttcacac
aaatcagcagctgcagctccatccactcacaaacaccattcacaaatcag
caacagcagattgatccagaagaaactgaacagcgctgccaatgggctgg
aatctgtggaagcagcaagaagccactggacatcacaagagatcgttggt
catgacaaatggagacaataagatggcaaggtgtaccatacatctagctt
tgtccactgtcttttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28423078_28424115
seq2: B6Ng01-031D05.b_43_1074

seq1  GAATTCTCTCGGGATCTGGAAAATTATCTCAGAATTGACCTTCAGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGGATCTGGAAAATTATCTCAGAATTGACCTTCAGAAGTC  50

seq1  ACTGAGGTTGTAAAATGAAGTGGTTGGACTTCATGGTTCTCTGCCAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTGTAAAATGAAGTGGTTGGACTTCATGGTTCTCTGCCAAGAC  100

seq1  CTATGCTCTGTGCCATGTGAAGAAGACTGAAATCAGGGCTGACTCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCTGTGCCATGTGAAGAAGACTGAAATCAGGGCTGACTCCATGC  150

seq1  TTCTGTCATATCTAGGAGAGGTGGAGAATAAAGCACATTCTTGGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATATCTAGGAGAGGTGGAGAATAAAGCACATTCTTGGCAAAAG  200

seq1  TTATACACGTGTGTGTTTGCATATGTGTGCATGTGTGAATACATATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACGTGTGTGTTTGCATATGTGTGCATGTGTGAATACATATGTGT  250

seq1  ATATGCATGTGCATATGTGTTTGTATACATGCCTGTGTATGTGTGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGTGCATATGTGTTTGTATACATGCCTGTGTATGTGTGCATGA  300

seq1  GAGGGGGGAGAGAGAGATGTTGGAACTAGAGCTTCTCATAAACTCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGAGAGAGAGATGTTGGAACTAGAGCTTCTCATAAACTCCATTA  350

seq1  CTAAGTAATATTTCTACCTCAACACTGCAAAGAAACAATATTGTGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAATATTTCTACCTCAACACTGCAAAGAAACAATATTGTGTTTCA  400

seq1  TAGTAATAGACAACTGGCAAAAATCTATAGCAATCAACCATGTGAATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAGACAACTGGCAAAAATCTATAGCAATCAACCATGTGAATTGC  450

seq1  GAAATGTGTCAGGACTCAGTTCTTAGAAAACAACCTTTTTTACTTAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTCAGGACTCAGTTCTTAGAAAACAACCTTTTTTACTTAGACA  500

seq1  GACATAGTTATTCAAGTAATCCAAGCATTTATTTTTATAATCTATTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTTATTCAAGTAATCCAAGCATTTATTTTTATAATCTATTCACA  550

seq1  TTATACCATGCTCTTTTTAGAATCCATCCTTCAGGCCCCAAGCCAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCATGCTCTTTTTAGAATCCATCCTTCAGGCCCCAAGCCAGTCCC  600

seq1  CATCTGCTTAAGCACACTTCTCTCACCGAATTCAATTTAGCCTCCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTAAGCACACTTCTCTCACCGAATTCAATTTAGCCTCCTTTCT  650

seq1  TTCTTCCCAAGTGGTAGGAATAGTTTCTGACCCAGTTGTTCAGAGGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAAGTGGTAGGAATAGTTTCTGACCCAGTTGTTCAGAGGATAC  700

seq1  TGATGATTTTTAAATCTCTGATTTCTTTCAGTATCCTGTCTGACACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTTTTAAATCTCTGATTTCTTTCAGTATCCTGTCTGACACTTCC  750

seq1  ATTACTGCCTCCTTCCTTGGAACAACACGTTGTCTGGAGGGTAGACTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCCTCCTTCCTTGGAACAACACGTTGTCTGGAGGGTAGACTGTC  800

seq1  TCTTTGTTTTGTGGTACAAACTTGAGCAAAATGACTTGGCACTGTTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTGTGGTACAAACTTGAGCAAAATGACTTGGCACTGTTTCAT  850

seq1  CAGAGGCCCTAGAAGCACCTATGCCCATTGCCTTTCAAGCTCCTTCTGCC  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCCTAG-AGCACCTATGCCCATTGCCTTTCAAGCTCCTTCTGCC  899

seq1  CGGTGACATTACCACGCAATTGAACATGACCTCTAGGACAGAGTGGTCAT  950
      | ||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  C-GTGACATTACCACGC-ATTGAACATGACCTCTA-GACAGAGTGGTCAT  946

seq1  GCTAAGAGGCAGTCAGCTATATATATTTGAGGGTTCTGGTTACTGGCAGC  1000
      ||| ||||||||||||||||||||||||   |||||||| ||||||||||
seq2  GCT-AGAGGCAGTCAGCTATATATATTTTGAGGTTCTGG-TACTGGCAGC  994

seq1  TTTCCATTTGTTAGTGAAACTAACGTTCACA-TCAGGTC  1038
      ||||||||||||| ||||||||||| ||||| |||||||
seq2  TTTCCATTTGTTA-TGAAACTAACGGTCACATTCAGGTC  1032

seq1: chr3_28583481_28584090
seq2: B6Ng01-031D05.g_66_675 (reverse)

seq1  ATGAAGAATTTAAGAACCTTATTAAAAGTAGGTTTTGAAAAATCTGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATTTAAGAACCTTATTAAAAGTAGGTTTTGAAAAATCTGAGCC  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAATATAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAATATAAATAAA  100

seq1  GCCTCAGAAACTAGAAAGGAGACCAAGAGTAGAAGACATATAGCTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAAACTAGAAAGGAGACCAAGAGTAGAAGACATATAGCTGATGA  150

seq1  ATAAAAATAACAAAGGAACCCATGGGACACAAAAGAAGAAGAGAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAACAAAGGAACCCATGGGACACAAAAGAAGAAGAGAAATGGA  200

seq1  GAAGTGGAGTTGCAGGAAGAAATTGGGAGGAAAGGGTTTTGAAGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGTTGCAGGAAGAAATTGGGAGGAAAGGGTTTTGAAGAGATAA  250

seq1  AGGGAAAGGAAAATCTATTAAAACAAACTATTTGAAGTATCCTAAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGAAAATCTATTAAAACAAACTATTTGAAGTATCCTAAAGATA  300

seq1  CTACAAATATCTTGCATTCTAAATTTTAAAAATAAGTATTTTAAAGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATATCTTGCATTCTAAATTTTAAAAATAAGTATTTTAAAGAGTA  350

seq1  TAGATTTTATGTTATCTATTCTTGCCTCATTTTAAAATAAAATACCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTATGTTATCTATTCTTGCCTCATTTTAAAATAAAATACCAACA  400

seq1  ACACCTAGTAGTACTCATATGATAATTTCTGCTTAGCTAAAATAGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGTAGTACTCATATGATAATTTCTGCTTAGCTAAAATAGAGATT  450

seq1  AATATGCTGTAAAATTGAACATATTATGTCCTTTTCAACATAATTACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGTAAAATTGAACATATTATGTCCTTTTCAACATAATTACACA  500

seq1  CACAAGGGGATTGATGGCTTGGAGCATCTCTGAAATGTTCAGTACCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGGATTGATGGCTTGGAGCATCTCTGAAATGTTCAGTACCATTC  550

seq1  TTTATCTATGTGCTTCCTAAGTTATGGCTCATGAGTTTAAAGACAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATGTGCTTCCTAAGTTATGGCTCATGAGTTTAAAGACAAGAAC  600

seq1  AGCAGAATTC  610
      ||||||||||
seq2  AGCAGAATTC  610