BAC Information

Click to search

BAC

Clone NameB6Ng01-031J22
Chromosome3 (Build37)
Map Location 52,653,875 - 52,679,135
singlet/doubletdoublet
Overlap genenone
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031J22.bB6Ng01-031J22.g
ACCDH861180DH861181
length1,1291,011
definitionDH861180|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J22, 5' end.DH861181|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,677,983 - 52,679,135)(52,653,875 - 52,654,908)
sequence
gaattccaccttgaaggatataaaatgcatcccccctgagactgtgacag
aaaggtgacctctggccagagcaacctggaggacaacaggtgacaagaga
gagcagcagtcccttgaagaagtagataggtgcaaagattaaaggaagtc
ggaaggctttgcagcaagtctgacggataagaagtgagaaaaaaagatag
atttaatgattgatgtgacattactggggagaggaactctgttattgtat
tatttttaaaagaagaaatacgatatagcttaaggaatctacatgctctc
tctgtctctttgtctatctgtgtctctctgtctctctctgtctttctgtc
tctctgtctctctctgtctctctctctctctctctgtgtgtgtgtgtgtg
tgtgtgtattggaagatgcagaatccaaacaattatacagctgctgtact
agatggctttatttcaacttgaaacaagctagtgtcatcagagaggaggg
agcttaaaaaacacctccataaggttgagctgtatgcaagtttgtagggc
attttcttaattagtgactaatgaaggagcgccaagcccattgtgagtga
agccatccctgggatagtagtcctgggctctataagaaagaaggctgagt
aagccaagggaagcaagccagtaagcagcacccctccatggcctctgcat
cagctcctgcctccaggtttctgccttgtttcaaataagattagttccaa
acacttatccatgacgttagaagtcagggaacagagagctttggttgcga
gggaagggagctctgcagtgatggcaatgctgtgtttctacacatgcgtg
agatagagccatgtaaagatacaatggactgtagatggtaaacctagcat
gccttttataaaagtatatatgtgaacaggagctcagacgcagtattaaa
attacagtactagataaccagacgcaagcgagtgtaatatcctgcgatga
gtagtttaagacctcatctggaaagtggaatgacgcaggagcagtcatca
ggttccaagcattcgactccgactgtacgccatccgtatcagacgccaga
catctctactcccgggaactattctcata
gaattcatgccctcgactgccagacccagggtggtctcagctcatatctg
aatagtcccgtgtggctgcttctctgagtaagacatgcccattaattatg
ccaacaaccacaacagagcactcaaccccactctgggtccagtaacaact
cggcaatccacagcagagcatccagatccactgtaacagctgcagactca
tacttagatcacacggttcaagctcgtagacttgtggaggaagtgaatgc
ctataacccagcaggctgcccagccttctcttgtgagcatttgctgtggg
tgtggacaagctaggcatggagagctgacctgggacaaaggggagtaatg
cccagaagaactaaaacacatttgtcagaatctggactcgttttggcttt
cacacagctgcctttttctgatagttggctgtagcgcttaaatgcatgtg
cctgcgaagtaggtcacacacacacatatgcacgcacacgcacgcatgca
cacatgtgcacacaacattgtgttgtcatttcttgaccacaccagaaacc
acacttgcactcactgcttcctgacataaagtgctaacgtatacaaaggc
aatgctcgagctctgaactggtgaagttgagaacagctccaacagtgccc
ccggggagaaggcgcacaccaggctgggaacagccactttgtgcatgccc
agctttcaaactgatgccctgtgtgagggaaaactaacacaagctgaatg
cctcctccacctgacgcttgacacgtgaattaggtcatttaatctaccaa
aggccatgattgatgttttgaaacttgccgtcactttcaaggtgtcacac
aataaacatgtgaattattctacacttttatgattaagtgcatttcagcc
gtgatatatcataatgcttcagtatgtggacagtgtgatgtttattcttc
gatgttagatattcacagtactttctttttatgagtttttttttcatctg
ttgtaataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52677983_52679135
seq2: B6Ng01-031J22.b_48_1176 (reverse)

seq1  TATGAGAAATAGTTTCCCGGAGATTAGAGATGTGCTGTGCGTCTGTATAC  50
      |||||| ||||||| || ||||  ||||||||| ||| ||||||| ||||
seq2  TATGAG-AATAGTTCCCGGGAG--TAGAGATGT-CTG-GCGTCTG-ATAC  44

seq1  GGAT-GCGTCAGCTGCAGAAGTCGGATGTGCTTGGAACCTGATGGACTGC  99
      |||| ||||   | |  | ||||| |  ||||||||||||||| ||||||
seq2  GGATGGCGT--ACAGTCGGAGTCGAA--TGCTTGGAACCTGAT-GACTGC  89

seq1  TCCTGCGTCCATCTCCACTTCTCAGATGATGTCTTAAACCTACTCCATCG  149
      |||||||| ||| |||||||  ||||||| |||||||| ||||| |||||
seq2  TCCTGCGT-CAT-TCCACTTTCCAGATGAGGTCTTAAA-CTACT-CATCG  135

seq1  CAGGATAATTAACACTTCGCCTTTGCGTCTGGTTTATCTAGTACTGTAAT  199
      |||||||  | |||| ||||  |||||||||| |||||||||||||||||
seq2  CAGGATA--TTACAC-TCGC--TTGCGTCTGG-TTATCTAGTACTGTAAT  179

seq1  TTTAATACTTGCGTTCTTGAGCTCTTGTTTCACATATATACTTTTATAAA  249
      |||||||| |||||   ||||||| || ||||||||||||||||||||||
seq2  TTTAATAC-TGCGT--CTGAGCTCCTG-TTCACATATATACTTTTATAAA  225

seq1  AGGCATGCTAGGTTTACCATCTACAGTCCATTGTATCTTTACATGGCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCTAGGTTTACCATCTACAGTCCATTGTATCTTTACATGGCTCT  275

seq1  ATCTCACGCATGTGTAGAAACACAGCATTGCCATCACTGCAGAGCTCCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACGCATGTGTAGAAACACAGCATTGCCATCACTGCAGAGCTCCCT  325

seq1  TCCCTCGCAACCAAAGCTCTCTGTTCCCTGACTTCTAACGTCATGGATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGCAACCAAAGCTCTCTGTTCCCTGACTTCTAACGTCATGGATAA  375

seq1  GTGTTTGGAACTAATCTTATTTGAAACAAGGCAGAAACCTGGAGGCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGAACTAATCTTATTTGAAACAAGGCAGAAACCTGGAGGCAGGA  425

seq1  GCTGATGCAGAGGCCATGGAGGGGTGCTGCTTACTGGCTTGCTTCCCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCAGAGGCCATGGAGGGGTGCTGCTTACTGGCTTGCTTCCCTTG  475

seq1  GCTTACTCAGCCTTCTTTCTTATAGAGCCCAGGACTACTATCCCAGGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCAGCCTTCTTTCTTATAGAGCCCAGGACTACTATCCCAGGGAT  525

seq1  GGCTTCACTCACAATGGGCTTGGCGCTCCTTCATTAGTCACTAATTAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACTCACAATGGGCTTGGCGCTCCTTCATTAGTCACTAATTAAGA  575

seq1  AAATGCCCTACAAACTTGCATACAGCTCAACCTTATGGAGGTGTTTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCTACAAACTTGCATACAGCTCAACCTTATGGAGGTGTTTTTTA  625

seq1  AGCTCCCTCCTCTCTGATGACACTAGCTTGTTTCAAGTTGAAATAAAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTCCTCTCTGATGACACTAGCTTGTTTCAAGTTGAAATAAAGCC  675

seq1  ATCTAGTACAGCAGCTGTATAATTGTTTGGATTCTGCATCTTCCAATACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTACAGCAGCTGTATAATTGTTTGGATTCTGCATCTTCCAATACA  725

seq1  CACACACACACACACACACAGAGAGAGAGAGAGAGAGACAGAGAGAGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGAGAGAGAGAGAGAGAGACAGAGAGAGACA  775

seq1  GAGAGACAGAAAGACAGAGAGAGACAGAGAGACACAGATAGACAAAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAAAGACAGAGAGAGACAGAGAGACACAGATAGACAAAGAGA  825

seq1  CAGAGAGAGCATGTAGATTCCTTAAGCTATATCGTATTTCTTCTTTTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGCATGTAGATTCCTTAAGCTATATCGTATTTCTTCTTTTAAA  875

seq1  AATAATACAATAACAGAGTTCCTCTCCCCAGTAATGTCACATCAATCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAATAACAGAGTTCCTCTCCCCAGTAATGTCACATCAATCATT  925

seq1  AAATCTATCTTTTTTTCTCACTTCTTATCCGTCAGACTTGCTGCAAAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATCTTTTTTTCTCACTTCTTATCCGTCAGACTTGCTGCAAAGCC  975

seq1  TTCCGACTTCCTTTAATCTTTGCACCTATCTACTTCTTCAAGGGACTGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGACTTCCTTTAATCTTTGCACCTATCTACTTCTTCAAGGGACTGCT  1025

seq1  GCTCTCTCTTGTCACCTGTTGTCCTCCAGGTTGCTCTGGCCAGAGGTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTTGTCACCTGTTGTCCTCCAGGTTGCTCTGGCCAGAGGTCAC  1075

seq1  CTTTCTGTCACAGTCTCAGGGGGGATGCATTTTATATCCTTCAAGGTGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCACAGTCTCAGGGGGGATGCATTTTATATCCTTCAAGGTGGA  1125

seq1  ATTC  1153
      ||||
seq2  ATTC  1129

seq1: chr3_52653875_52654908
seq2: B6Ng01-031J22.g_65_1075

seq1  GAATTCATGCCCTCGACTGCCAGACCCAGGGTGGTCTCAGCTCATATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCCTCGACTGCCAGACCCAGGGTGGTCTCAGCTCATATCTG  50

seq1  AATAGTCCCGTGTGGCTGCTTCTCTGAGTAAGACATGCCCATTAATTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCCGTGTGGCTGCTTCTCTGAGTAAGACATGCCCATTAATTATG  100

seq1  CCAACAACCACAACAGAGCACTCAACCCCACTCTGGGTCCAGTAACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCACAACAGAGCACTCAACCCCACTCTGGGTCCAGTAACAACT  150

seq1  CGGCAATCCACAGCAGAGCATCCAGATCCACTGTAACAGCTGCAGACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATCCACAGCAGAGCATCCAGATCCACTGTAACAGCTGCAGACTCA  200

seq1  TACTTAGATCACACGGTTCAAGCTCGTAGACTTGTGGAGGAAGTGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATCACACGGTTCAAGCTCGTAGACTTGTGGAGGAAGTGAATGC  250

seq1  CTATAACCCAGCAGGCTGCCCAGCCTTCTCTTGTGAGCATTTGCTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACCCAGCAGGCTGCCCAGCCTTCTCTTGTGAGCATTTGCTGTGGG  300

seq1  TGTGGACAAGCTAGGCATGGAGAGCTGACCTGGGACAAAGGGGAGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAAGCTAGGCATGGAGAGCTGACCTGGGACAAAGGGGAGTAATG  350

seq1  CCCAGAAGAACTAAAACACATTTGTCAGAATCTGGACTCGTTTTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGAACTAAAACACATTTGTCAGAATCTGGACTCGTTTTGGCTTT  400

seq1  CACACAGCTGCCTTTTTCTGATAGTTGGCTGTAGCGCTTAAATGCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTGCCTTTTTCTGATAGTTGGCTGTAGCGCTTAAATGCATGTG  450

seq1  CCTGCGAAGTAGGTCACACACACACATATGCACGCACACGCACGCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGAAGTAGGTCACACACACACATATGCACGCACACGCACGCATGCA  500

seq1  CACATGTGCACACAACATTGTGTTGTCATTTCTTGACCACACCAGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGCACACAACATTGTGTTGTCATTTCTTGACCACACCAGAAACC  550

seq1  ACACTTGCACTCACTGCTTCCTGACATAAAGTGCTAACGTATACAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCACTCACTGCTTCCTGACATAAAGTGCTAACGTATACAAAGGC  600

seq1  AATGCTCGAGCTCTGAACTGGTGAAGTTGAGAACAGCTCCAACAGTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCGAGCTCTGAACTGGTGAAGTTGAGAACAGCTCCAACAGTGCCC  650

seq1  CCGGGGAGAAGGCGCACACCAGGCTGGGAACAGCCACTTTGTGCATGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGAAGGCGCACACCAGGCTGGGAACAGCCACTTTGTGCATGCCC  700

seq1  AGCTTTCAAACTGATGCCCTGTGTGAGGGAAAACTAACACAAGCTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAAACTGATGCCCTGTGTGAGGGAAAACTAACACAAGCTGAATG  750

seq1  CCTCCTCCACCTGACGCTTGACACGTGAATTAGGTCATTTAATCTACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCACCTGACGCTTGACACGTGAATTAGGTCATTTAATCTACCAA  800

seq1  AGGCCATGATTGATGTTTTGAAACTTGCCGTCACTTTCCAAGGTGTCACA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCCATGATTGATGTTTTGAAACTTGCCGTCACTTT-CAAGGTGTCACA  849

seq1  CAATAAACATGTGAATTATTCTACAACTTTTAATGATTAAGTGGCATTTC  900
      |||||||||||||||||||||||| |||||| |||||||||| |||||||
seq2  CAATAAACATGTGAATTATTCTAC-ACTTTT-ATGATTAAGT-GCATTTC  896

seq1  AGCCGGTGAATATATCATAATTGCTTCAGTATTGTGGACAGGTGTGGATG  950
      |||| ||| ||||||||||| |||||||||| |||||||| |||| ||||
seq2  AGCC-GTG-ATATATCATAA-TGCTTCAGTA-TGTGGACA-GTGT-GATG  940

seq1  TTTTAATTCTTCGATGGTATAGATAATTTCAACAGTTAACTATCTTTTTA  1000
      |||  |||||||||||   ||||||  ||| |||||  ||| ||||||||
seq2  TTT--ATTCTTCGATG--TTAGATA--TTC-ACAGT--ACTTTCTTTTTA  981

seq1  TGAGGTTTTTTTTTTTTCATCTGTCTGT-ATAATA  1034
      ||||    |||||||||||||||| ||| ||||||
seq2  TGAG----TTTTTTTTTCATCTGT-TGTAATAATA  1011