BAC Information

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BAC

Clone NameB6Ng01-031P07
Chromosome3 (Build37)
Map Location 133,777,274 - 133,969,057
singlet/doubletdoublet
Overlap geneLOC668862, LOC100039199, Cxxc4
Upstream gene9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
Downstream genePpia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031P07.bB6Ng01-031P07.g
ACCDH861429DH861430
length1,1531,050
definitionDH861429|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P07, 5' end.DH861430|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,777,274 - 133,778,436)(133,967,988 - 133,969,057)
sequence
gaattcaaacagctttctgcggctccgtcttcatttgccaagttgggtga
ttctacttgagttattgaaacctttttactatagacattaaaggcaaact
ttagactctatttaagaaagtgtccctgggaaaagacactgaaaataatt
ctttcctattgtattatcctctagaaaaagaagcaaggaataaaccaaat
gctgtgtgttccctgggaacaggaagtctgttaaaagacccccaggagca
agagagcaaagcatgggtgcctgtgtgacagtgacaggatcacatcacaa
aggcccctgcagctgtgtggggcctgtggagctgactcctgtcagaggca
tgattagtgcaaccccctagtggaactgtccattgagggtggtgaccaat
ttaaaaacaaggagtgagccagttaattacattgtcagcaataaatctag
cagtgggctgttggggcagccaggcctgtgatatattcaggcagccatct
gtccatcttccccatccactagacacttgttcctacagaattggttcgga
caagcagcctagcaggaaggtcccttgtcttaaggctgtcttctgtgagc
tttacccatttcagggaacttggcaatagcaagtgagaactcagaaaaag
ccctgtccctaaagatataggagcagagcagtcatccttgctccctcttt
ctctttgctccaccattacttttgttcctctttctttaaacaccgaatat
gtttaattttttaagattatgttcatttgcagacatatgtgttacgcaca
tgtgacatgctaatgtgaacacacatgtgcatacattcagaggccacccc
acaccatgctaagtggcttcctatagagcccaaaggccagactgccttca
gatagagtctctcactgagccagaagcttgctggtttgactagaccatca
gatggcgaatgcgcagatctgctgtctaaacccccaaatgtgggttacaa
gcatacacactttggctagcttgtagtaggtgctgggggaataaaaaatc
aggtctccatacacagcactctaccctaagcaaatctccctgactttaaa
gtatttttttaataatatggatcaaagcagaacaataccatagaaccccc
ccc
gaattccactaacccacttcttgacacttcagtggagaccttgtatgggt
aattaacaagaaggggcctgttcttaaggattttttaagaatagttggtc
tattcagagttccgaatctctgaattttctgtgcatgggaaaatgctttc
taaaccctccctttcttctgttactcagtcctaggaattccagggacacc
aagcagcacagaaaataacaggcaacagcaggaaaactctagcctgacca
gtggttaaatgctggtcagaaatcaggccaactctcaaatttctgctaag
gtcctggaccactcccctgctgtccaagttacagcagagtctatgaaaaa
gcagctggataaaaatgaatgcacctatttgtgactttaagcctggttga
cctggtccaggaaggacatgtagaggtttatagtttcaggttggctaggt
gactcctttccagctgttagaaatttaaaaggaccttcaactcctttgag
caatacttccactaaaatctcagagctgcaagttggaagaaatgtagtat
tcaattgttaggctttcagccaactgatggctagcagggctggtgcagcc
tgcgatcatatgacagagacttggagttggcttagggtgaaagaaataat
gggaagtgaattgttaactgccacctgggcagtggaactccaatcaaaat
cagaagcccaaccatctatacttgtacttttcttgccttgcacttccctg
ggcttgttttccagtgggaaaatgtgcccctcccccttcaggtaataaat
gaacagctccatccatctcaaactgtctctcagacactgatggggccagt
ccagagagaagcaatcaagtagagtgttggctgccttgaagacagccccg
ctgaataaatgacttgctggggtttttttgtgttgttgtgtgcttttttt
ctttgctcatttgctttggccattatttcttggtctcgatccataggtta
cttcttctcataatgtattcaaaccactgatatatgactaacatctatgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133777274_133778436
seq2: B6Ng01-031P07.b_46_1198

seq1  GAATTCAAACAGCTTTCTGCGGCTCCGTCTTCATTTGCCAAGTTGGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGCTTTCTGCGGCTCCGTCTTCATTTGCCAAGTTGGGTGA  50

seq1  TTCTACTTGAGTTATTGAAACCTTTTTACTATAGACATTAAAGGCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTGAGTTATTGAAACCTTTTTACTATAGACATTAAAGGCAAACT  100

seq1  TTAGACTCTATTTAAGAAAGTGTCCCTGGGAAAAGACACTGAAAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCTATTTAAGAAAGTGTCCCTGGGAAAAGACACTGAAAATAATT  150

seq1  CTTTCCTATTGTATTATCCTCTAGAAAAAGAAGCAAGGAATAAACCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATTGTATTATCCTCTAGAAAAAGAAGCAAGGAATAAACCAAAT  200

seq1  GCTGTGTGTTCCCTGGGAACAGGAAGTCTGTTAAAAGACCCCCAGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTTCCCTGGGAACAGGAAGTCTGTTAAAAGACCCCCAGGAGCA  250

seq1  AGAGAGCAAAGCATGGGTGCCTGTGTGACAGTGACAGGATCACATCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAAGCATGGGTGCCTGTGTGACAGTGACAGGATCACATCACAA  300

seq1  AGGCCCCTGCAGCTGTGTGGGGCCTGTGGAGCTGACTCCTGTCAGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTGCAGCTGTGTGGGGCCTGTGGAGCTGACTCCTGTCAGAGGCA  350

seq1  TGATTAGTGCAACCCCCTAGTGGAACTGTCCATTGAGGGTGGTGACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTGCAACCCCCTAGTGGAACTGTCCATTGAGGGTGGTGACCAAT  400

seq1  TTAAAAACAAGGAGTGAGCCAGTTAATTACATTGTCAGCAATAAATCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAAGGAGTGAGCCAGTTAATTACATTGTCAGCAATAAATCTAG  450

seq1  CAGTGGGCTGTTGGGGCAGCCAGGCCTGTGATATATTCAGGCAGCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGTTGGGGCAGCCAGGCCTGTGATATATTCAGGCAGCCATCT  500

seq1  GTCCATCTTCCCCATCCACTAGACACTTGTTCCTACAGAATTGGTTCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTTCCCCATCCACTAGACACTTGTTCCTACAGAATTGGTTCGGA  550

seq1  CAAGCAGCCTAGCAGGAAGGTCCCTTGTCTTAAGGCTGTCTTCTGTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCCTAGCAGGAAGGTCCCTTGTCTTAAGGCTGTCTTCTGTGAGC  600

seq1  TTTACCCATTTCAGGGAACTTGGCAATAGCAAGTGAGAACTCAGAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATTTCAGGGAACTTGGCAATAGCAAGTGAGAACTCAGAAAAAG  650

seq1  CCCTGTCCCTAAAGATATAGGAGCAGAGCAGTCATCCTTGCTCCCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCTAAAGATATAGGAGCAGAGCAGTCATCCTTGCTCCCTCTTT  700

seq1  CTCTTTGCTCCACCATTACTTTTGTTCCTCTTTCTTTAAACACCGAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTCCACCATTACTTTTGTTCCTCTTTCTTTAAACACCGAATAT  750

seq1  GTTTAATTTTTTAAGATTATGTTCATTTGCAGACATATGTGTTACGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTTTTAAGATTATGTTCATTTGCAGACATATGTGTTACGCACA  800

seq1  TGTGACATGCTAATGTGAACACACATGTGCATACATTCAGAGGCCACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATGCTAATGTGAACACACATGTGCATACATTCAGAGGCCACCCC  850

seq1  ACACCATGCTAAGTGGCTTCCTATAGAGCCC-AAGGCCAGACTGCCTTCA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACACCATGCTAAGTGGCTTCCTATAGAGCCCAAAGGCCAGACTGCCTTCA  900

seq1  GATAGAGTCTCTCACTGAGCCAGAAGCTTGCTGGTTTGACTAGACCATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTCTCTCACTGAGCCAGAAGCTTGCTGGTTTGACTAGACCATCA  950

seq1  GGATGGCGAATGCGCAGGATCTGCTTGTCTATACCCCCAAATGTGGAGTT  999
       ||||||||||||||| ||||||| |||||| |||||||||||||| |||
seq2  -GATGGCGAATGCGCA-GATCTGC-TGTCTAAACCCCCAAATGTGG-GTT  996

seq1  ACAAGCATACACACTTTTGGCTAGCTTGTTAGTAGGTGCTGGGGG-ATTA  1048
      |||||||||||||| ||||||||||||| |||||||||||||||| || |
seq2  ACAAGCATACACAC-TTTGGCTAGCTTG-TAGTAGGTGCTGGGGGAATAA  1044

seq1  GAACTCAGGTCTCCATACACAGCACTCTTACCCTTAAGC-AATCTCCCTG  1097
       || ||||||||||||||||||||||| ||||| ||||| ||||||||||
seq2  AAAATCAGGTCTCCATACACAGCACTC-TACCC-TAAGCAAATCTCCCTG  1092

seq1  ACCTTTAAAGTATATTTTTAAAATAATATGATACAAAGGCAAAAACAAAA  1147
      | ||||||||||| |||||  |||||||||   |||||   | ||||| |
seq2  A-CTTTAAAGTATTTTTTT--AATAATATGGATCAAAG--CAGAACAATA  1137

seq1  CAAAAGAACCCCCCCC  1163
      | | ||||||||||||
seq2  CCATAGAACCCCCCCC  1153

seq1: chr3_133967988_133969057
seq2: B6Ng01-031P07.g_68_1117 (reverse)

seq1  ACATAGATGTTAGTCAATAATATCAGTTGGTTTGAATACATTATATGAGA  50
      ||||||||||||||||   ||||||| ||||||||||||||  |||||||
seq2  ACATAGATGTTAGTCA--TATATCAG-TGGTTTGAATACAT--TATGAGA  45

seq1  TAGAAGTTATACGTATGGGATCGAGACCAAGAAATAATTGGCCAAAAAGC  100
       ||||||   || ||| |||||||||||||||||||| |||||  |||||
seq2  -AGAAGT--AACCTAT-GGATCGAGACCAAGAAATAA-TGGCC--AAAGC  88

seq1  AAATGAAGCAAAGAAAAAAAAAGACAACAACAACAACAACAAAAAAAACC  150
      ||||| |||||||  ||||||||   |||||||||      |||||||||
seq2  AAATG-AGCAAAG--AAAAAAAGCACACAACAACA-----CAAAAAAACC  130

seq1  CCAGCAAGTCATTTATTCAGCGGGGCTGTCTTCAAGGCAGCCAACACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGTCATTTATTCAGCGGGGCTGTCTTCAAGGCAGCCAACACTCT  180

seq1  ACTTGATTGCTTCTCTCTGGACTGGCCCCATCAGTGTCTGAGAGACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTGCTTCTCTCTGGACTGGCCCCATCAGTGTCTGAGAGACAGTT  230

seq1  TGAGATGGATGGAGCTGTTCATTTATTACCTGAAGGGGGAGGGGCACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGATGGAGCTGTTCATTTATTACCTGAAGGGGGAGGGGCACATT  280

seq1  TTCCCACTGGAAAACAAGCCCAGGGAAGTGCAAGGCAAGAAAAGTACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGGAAAACAAGCCCAGGGAAGTGCAAGGCAAGAAAAGTACAAG  330

seq1  TATAGATGGTTGGGCTTCTGATTTTGATTGGAGTTCCACTGCCCAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGGTTGGGCTTCTGATTTTGATTGGAGTTCCACTGCCCAGGTGG  380

seq1  CAGTTAACAATTCACTTCCCATTATTTCTTTCACCCTAAGCCAACTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACAATTCACTTCCCATTATTTCTTTCACCCTAAGCCAACTCCAA  430

seq1  GTCTCTGTCATATGATCGCAGGCTGCACCAGCCCTGCTAGCCATCAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCATATGATCGCAGGCTGCACCAGCCCTGCTAGCCATCAGTTG  480

seq1  GCTGAAAGCCTAACAATTGAATACTACATTTCTTCCAACTTGCAGCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGCCTAACAATTGAATACTACATTTCTTCCAACTTGCAGCTCTG  530

seq1  AGATTTTAGTGGAAGTATTGCTCAAAGGAGTTGAAGGTCCTTTTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAGTGGAAGTATTGCTCAAAGGAGTTGAAGGTCCTTTTAAATTT  580

seq1  CTAACAGCTGGAAAGGAGTCACCTAGCCAACCTGAAACTATAAACCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCTGGAAAGGAGTCACCTAGCCAACCTGAAACTATAAACCTCTA  630

seq1  CATGTCCTTCCTGGACCAGGTCAACCAGGCTTAAAGTCACAAATAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTCCTGGACCAGGTCAACCAGGCTTAAAGTCACAAATAGGTGC  680

seq1  ATTCATTTTTATCCAGCTGCTTTTTCATAGACTCTGCTGTAACTTGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTATCCAGCTGCTTTTTCATAGACTCTGCTGTAACTTGGACA  730

seq1  GCAGGGGAGTGGTCCAGGACCTTAGCAGAAATTTGAGAGTTGGCCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGAGTGGTCCAGGACCTTAGCAGAAATTTGAGAGTTGGCCTGATT  780

seq1  TCTGACCAGCATTTAACCACTGGTCAGGCTAGAGTTTTCCTGCTGTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCAGCATTTAACCACTGGTCAGGCTAGAGTTTTCCTGCTGTTGCC  830

seq1  TGTTATTTTCTGTGCTGCTTGGTGTCCCTGGAATTCCTAGGACTGAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTCTGTGCTGCTTGGTGTCCCTGGAATTCCTAGGACTGAGTAA  880

seq1  CAGAAGAAAGGGAGGGTTTAGAAAGCATTTTCCCATGCACAGAAAATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAGGGAGGGTTTAGAAAGCATTTTCCCATGCACAGAAAATTCA  930

seq1  GAGATTCGGAACTCTGAATAGACCAACTATTCTTAAAAAATCCTTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCGGAACTCTGAATAGACCAACTATTCTTAAAAAATCCTTAAGAA  980

seq1  CAGGCCCCTTCTTGTTAATTACCCATACAAGGTCTCCACTGAAGTGTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCTTCTTGTTAATTACCCATACAAGGTCTCCACTGAAGTGTCAA  1030

seq1  GAAGTGGGTTAGTGGAATTC  1070
      ||||||||||||||||||||
seq2  GAAGTGGGTTAGTGGAATTC  1050