BAC Information

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BAC

Clone NameB6Ng01-032C20
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,224 - 41,059,73759,572,369 - 59,572,711
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C20.bB6Ng01-032C20.g
ACCDH861589DH861590
length993343
definitionDH861589|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C20, 5' end.DH861590|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(59,572,369 - 59,572,711)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccgtcttgagttctttatttatattagatattagtccc
ctatctgatttaggataggtaatctatcctaaatctgttggtggcctttt
tgtcttattgaaggtgtcttttgccttacagaagctttgcagtttcatga
gatcccatttgtcaattctcgatcttacatcacaagtcattgctgttcta
ttcaggaatatttcccctgtacccatatcatcgaggattttccccacttt
cccctctataagtttcagtgtctctggttttatgtggagttccttgatcc
acttagatttgatcttagtacaaggagataggaatggatcaattctcatt
cttctacatgataaccaccagttgagccagcaccatttgttgaaaatgct
gtcttttttccactggatggttttagctcccttgtcaaagatcaagtgac
cataggtgtgtgggttcatttctgtgtcttcaattctataccattcgtct
acttgtctatcgctataccagtaccatacagtttttatcacaattgctct
gtagtacagctttaggtcaggcatggtgattccaccagaggttcttttat
ccttgagaagagtttttgctatcctaggttttttgttattccagatgaat
ttcctgattgctttttctaattcgttgaagaattgtgttggaattttgat
ggggattgcattgaatctgtagattgctttttgcaagatagccattttta
caatgttgatcctgccaatccatgagcatgggagatctttccatcttctg
agatcttctttaatatctttcttcagagacttgatggtcttatcatacag
atctttcacttccttagttagagtcatgccgaggtattttacattatttg
tgactattgagaaggtgttgtttccactaatttctttctcagc
cattgagtttttggtttttttttttttttgacataaaaataatatcagga
gctagagaatgtaccaaaggagctaaaggggtttgcagccccatagaaag
aacaaccatatgatctatcccataactacagagttccctgggactgaacc
accaaccaaagaaaacacatgttgggactcatgattctagctgcatatat
agaagaggatggtctagtcagttatcaatgggagaagaggaccttggtcc
tctgaaggttctgtttcccagtatagaggaatgccagggccaggaagcag
gagtgggtggataggttagcaggggtagggaaaggggatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-032C20.b_52_563 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCTCAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAATGAGAATTGATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      ||||||||||| |||||||||||||| ||| || |||||||  |||||||
seq2  ACTTATAGAGGGGAAAGTGGGGAAAATCCTCGATGATATGGGTACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||| ||||||| |||||||||||||| |||||| |||||||| |||||| 
seq2  AAATATTCCTGAATAGAACAGCAATGACTTGTGATGTAAGATCGAGAATT  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GACAAATGGGATCTCATGAAACTGCAAAGCTTCTGTAAGGCAAAAGACAC  350

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      | ||||||||||||||||| ||||||||||||  | |  ||   ||||||
seq2  CTTCAATAAGACAAAAAGGCCACCAACAGATTTAGGATAGA---TTACCT  397

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||||| |||||| || |||||||||||
seq2  ATCCTAAATCAGATAGGGGACTAATATCTAATATAAATAAAGAACTCAAG  447

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  497

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  512

seq1: chr6_59572369_59572711
seq2: B6Ng01-032C20.g_74_416

seq1  CATTGAGTTTTTGGTTTTTTTTTTTTTTTGACATAAAAATAATATCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTTTTGGTTTTTTTTTTTTTTTGACATAAAAATAATATCAGGA  50

seq1  GCTAGAGAATGTACCAAAGGAGCTAAAGGGGTTTGCAGCCCCATAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAATGTACCAAAGGAGCTAAAGGGGTTTGCAGCCCCATAGAAAG  100

seq1  AACAACCATATGATCTATCCCATAACTACAGAGTTCCCTGGGACTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCATATGATCTATCCCATAACTACAGAGTTCCCTGGGACTGAACC  150

seq1  ACCAACCAAAGAAAACACATGTTGGGACTCATGATTCTAGCTGCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAAGAAAACACATGTTGGGACTCATGATTCTAGCTGCATATAT  200

seq1  AGAAGAGGATGGTCTAGTCAGTTATCAATGGGAGAAGAGGACCTTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGATGGTCTAGTCAGTTATCAATGGGAGAAGAGGACCTTGGTCC  250

seq1  TCTGAAGGTTCTGTTTCCCAGTATAGAGGAATGCCAGGGCCAGGAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTTCTGTTTCCCAGTATAGAGGAATGCCAGGGCCAGGAAGCAG  300

seq1  GAGTGGGTGGATAGGTTAGCAGGGGTAGGGAAAGGGGATAGGA  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTGGATAGGTTAGCAGGGGTAGGGAAAGGGGATAGGA  343