BAC Information

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BAC

Clone NameB6Ng01-032D13
Chromosome3 (Build37)10 (Build37)
Map Location 123,410,615 - 123,410,69946,746,680 - 46,747,788
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032D13.bB6Ng01-032D13.g
ACCDH861621DH861622
length9691,086
definitionDH861621|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D13, 5' end.DH861622|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,410,615 - 123,410,699)(46,746,680 - 46,747,788)
sequence
gaattctctgtaattggtaaagacaaacatacacatcataaataaaaatt
aagtaaattggaaaaaatggaaattaaaaatgagcagaaattaaatggaa
taatagcttttatttgatagcaaatggcttataaattataaaactggaaa
gtgatgagatatgctaattcatctttttgagtctgacttaccttactaag
tatgactgtagccaaaatagccaagagactagatctagttggtaggcagg
acccctggttgagaatggggtcgctcactcatctcagaaatattaattca
gaattgttcctgtgaaaagtaaatgcaggaataaagagtggagcagagac
ttgaaggaaaagccattcagagactgcttcacccagggatccatccaatc
tgcagacactgaacccagacattgttgctgatgccaagaagcacttgctg
acaggagcctggtacagctgtctcctaagaggctctgccagagcctgacc
aatataggtgtgggtgcatgtagccaaacattggactgagcaaggagacc
acaacagaggagttaggggaagaactgaaatagctgaaaagatttgcaac
cccataggaagaaatgcatcaaccaacctgaccctccagagctcccaagg
actaaaccaccaaccaaagagggactcatggctctagctgcatatgtagc
cttctctggggtcaatgggagaagagccccttggtactgtgaagacttga
tgacacaatgttggggagtgctatggcactgagacatgaatggatgagta
ggtgggtcaggagcaccctcatagaagcaggggacaggggataggatatg
gttgtctctgattgagaaaatgaaagggaatcacatttgaaatataaata
attaaattaaccaatcaaaagcaacatcatcattaacaaagatgactgtt
tagttccatccattctttg
gaattctatcagtacgctagagacgagaaggtcttaaaaatcacatgcca
agttaaataagcagcaagtcgaagcaactaatttggcaagcatagaaggc
accatatctttgaaaaaaaaaattgaaaagccacagttctctattgaaga
tttcccattttcctaacatctagaactaaaaaaataaaaataaaaaaatg
gaaaaggaatcaaaaaggtgaatacattatagcagttactttaaacttga
aattttagaaaggaagattaacatagaagttgaacattcagtatagaaat
tctacttccactgatacctgatattaaatgtattctctgaggatgaatat
ctaaactgccaaaatcaaatgtcaaatgttagactatgttttccagaaga
caatgataaataatctgatcaattacctcttgtcttgcttgtttctgaaa
acagatatatctacagatttttgtaactgttaaaattaacaaacattcat
taaatagaatcattgagaagattcttaacaaatatataacatctaatatc
ttattaatatgtagacttgatattattcatctcataaataacattaggca
acatggcatattgtagagagagaaatagtatttacatcaatttataagat
acacttcacagtatcttaaggaataagaatattctcccaacaacttagat
ttacaaaataaattatgataaatttaacagatctttgataatcatgatac
tactattcagcactaactaactattcaacactgatatcatatctagacaa
aatttctttgtcaaactatgggaatatttttaaaaatgataattgataac
attacaattaactgtataaacattacaatgtaattatctccctatgttat
tttcattgcatattcaaatcatcaagaaactcctggtcacatttacaagg
accccctattcacatattttactactttcaaactttatactctttagcta
ttagaatgagatttactgtaaataactatattcttgtagcacatttgctt
atcagccttaatagggagtagttttacagctgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123410615_123410699
seq2: B6Ng01-032D13.b_121_550

seq1  --------------------------------------------------  0
                                                        
seq2  TAAAAATGAGCAGAAATTAAATGGAATAATAGCTTTTATTTGATAGCAAA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGGCTTATAAATTATAAAACTGGAAAGTGATGAGATATGCTAATTCATCT  100

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTGAGTCTGACTTACCTTACTAAGTATGACTGTAGCCAAAATAGCCAA  150

seq1  --------------------------------------------------  0
                                                        
seq2  GAGACTAGATCTAGTTGGTAGGCAGGACCCCTGGTTGAGAATGGGGTCGC  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCACTCATCTCAGAAATATTAATTCAGAATTGTTCCTGTGAAAAGTAAAT  250

seq1  --------------------------------------------------  0
                                                        
seq2  GCAGGAATAAAGAGTGGAGCAGAGACTTGAAGGAAAAGCCATTCAGAGAC  300

seq1  -----------------------------TAAAAATGA--GCAGAAATTA  19
                                     | | |||   |||| ||| 
seq2  TGCTTCACCCAGGGATCCATCCAATCTGCAGACACTGAACCCAGACATTG  350

seq1  T--------------AGTGCATGCTGACAGGAGCCTGATATAGCTGTCTC  55
      |              ||  | |||||||||||||||| || |||||||||
seq2  TTGCTGATGCCAAGAAGCACTTGCTGACAGGAGCCTGGTACAGCTGTCTC  400

seq1  CTGAGAGGCTCTGCCAGAGCTTGACAAATA  85
      || ||||||||||||||||| |||| ||||
seq2  CTAAGAGGCTCTGCCAGAGCCTGACCAATA  430

seq1: chr10_46746680_46747788
seq2: B6Ng01-032D13.g_70_1155

seq1  GAATTCTATCAGTACGCTAGAGACGAGAAGGTCTTAAAAATCACATGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAGTACGCTAGAGACGAGAAGGTCTTAAAAATCACATGCCA  50

seq1  AGTTAAATAAGCAGCAAGTCGAAGCAACTAATTTGGCAAGCATAGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATAAGCAGCAAGTCGAAGCAACTAATTTGGCAAGCATAGAAGGC  100

seq1  ACCATATCTTTGAAAAAAAAAATTGAAAAGCCACAGTTCTCTATTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTTTGAAAAAAAAAATTGAAAAGCCACAGTTCTCTATTGAAGA  150

seq1  TTTCCCATTTTCCTAACATCTAGAACTAAAAAAATAAAAATAAAAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTTTCCTAACATCTAGAACTAAAAAAATAAAAATAAAAAAATG  200

seq1  GAAAAGGAATCAAAAAGGTGAATACATTATAGCAGTTACTTTAAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAATCAAAAAGGTGAATACATTATAGCAGTTACTTTAAACTTGA  250

seq1  AATTTTAGAAAGGAAGATTAACATAGAAGTTGAACATTCAGTATAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGAAAGGAAGATTAACATAGAAGTTGAACATTCAGTATAGAAAT  300

seq1  TCTACTTCCACTGATACCTGATATTAAATGTATTCTCTGAGGATGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCCACTGATACCTGATATTAAATGTATTCTCTGAGGATGAATAT  350

seq1  CTAAACTGCCAAAATCAAATGTCAAATGTTAGACTATGTTTTCCAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGCCAAAATCAAATGTCAAATGTTAGACTATGTTTTCCAGAAGA  400

seq1  CAATGATAAATAATCTGATCAATTACCTCTTGTCTTGCTTGTTTCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATAAATAATCTGATCAATTACCTCTTGTCTTGCTTGTTTCTGAAA  450

seq1  ACAGATATATCTACAGATTTTTGTAACTGTTAAAATTAACAAACATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATATCTACAGATTTTTGTAACTGTTAAAATTAACAAACATTCAT  500

seq1  TAAATAGAATCATTGAGAAGATTCTTAACAAATATATAACATCTAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAATCATTGAGAAGATTCTTAACAAATATATAACATCTAATATC  550

seq1  TTATTAATATGTAGACTTGATATTATTCATCTCATAAATAACATTAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATATGTAGACTTGATATTATTCATCTCATAAATAACATTAGGCA  600

seq1  ACATGGCATATTGTAGAGAGAGAAATAGTATTTACATCAATTTATAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCATATTGTAGAGAGAGAAATAGTATTTACATCAATTTATAAGAT  650

seq1  ACACTTCACAGTATCTTAAGGAATAAGAATATTCTCCCAACAACTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCACAGTATCTTAAGGAATAAGAATATTCTCCCAACAACTTAGAT  700

seq1  TTACAAAATAAATTATGATAAATTTAACAGATCTTTGATAATCATGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATAAATTATGATAAATTTAACAGATCTTTGATAATCATGATAC  750

seq1  TACTATTCAGCACTAACTAACTATTCAACACTGATATCATATCTAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCAGCACTAACTAACTATTCAACACTGATATCATATCTAGACAA  800

seq1  AATTTCTTTTGTCAAACTATGGAAATATTTTTAAAAATGATAATTGATAA  850
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AATTTC-TTTGTCAAACTATGGGAATATTTTTAAAAATGATAATTGATAA  849

seq1  CATTACAATTAACTGTATAAACATTACAATGTAATTATCTCCCTATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATTACAATTAACTGTATAAACATTACAATGTAATTATCTCCCTATG-TT  898

seq1  ATTTTCATTGCATATTCAAATCAATCAAGAAACTCCTGGTCCACATTTAC  950
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ATTTTCATTGCATATTCAAATC-ATCAAGAAACTCCTGGT-CACATTTAC  946

seq1  AA-GACCCCCTATTTCACATATTTTACTACTTTCAATACTTTATACTCTT  999
      || ||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AAGGACCCCCTA-TTCACATATTTTACTACTTTCAA-ACTTTATACTCTT  994

seq1  TTATACTAATTAAGAAATGAGAATTTTACATGTAAAATAACTAATATCCT  1049
         ||   ||||   |||||||  ||||| ||| |||||||| |||| ||
seq2  ---TAGCTATTA--GAATGAGA--TTTAC-TGT-AAATAACT-ATATTCT  1034

seq1  TTTAAGCACATTTTGCTTTATACAGTCTTATATAAGTGAGTATGTTTTAA  1099
      | | |||||| ||||| |||| ||| |||| || || ||||| ||||| |
seq2  TGT-AGCACA-TTTGC-TTAT-CAGCCTTA-AT-AGGGAGTA-GTTTT-A  1076

seq1  CAGCTGACTT  1109
      ||||||||||
seq2  CAGCTGACTT  1086