BAC Information

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BAC

Clone NameB6Ng01-032F12
Chromosome3 (Build37)
Map Location 87,053,821 - 87,197,359
singlet/doubletdoublet
Overlap geneMsr2, Cd5l, Fcrl1
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355
Downstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F12.bB6Ng01-032F12.g
ACCDH861711DH861712
length1,1161,050
definitionDH861711|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F12, 5' end.DH861712|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,053,821 - 87,054,792)(87,196,281 - 87,197,359)
sequence
gaattccagttcctggatgacttcccagcttctcagcctccaggcctcct
tcctgcctaaattagtgagagaagcttccttctcctccagaacttttggg
ggagtttctgttggtcctggtccctcctgctgactcgtgcccattcagct
gaggcctggctgtctctgctaggtagtgccactgctgctgattcgtgttt
gttatactgactctaccaaacaggactgctggtgtgtccatgaagtgtct
gcgagtggattgagttgctgctgctgactcctgtaaactgaactgtcaat
atcttgacaatgcagatgggatttgttccaaagaaccatttctaaacagg
tccacttcccctgtatcctttcttttctactacctctggtaagtggtgag
ctagaagggaggttaaagcatttaagaaccatcattaaaaatgggctttg
aaaaattaaagttacagagcatcacacaaaaccaggcacaatagcacata
cctgttaaccaagcactcagaaaatggaggcaggagaattagaagctcaa
atttacgcttggctatatcacaagtttgagggtcatcctaggctatggtg
atggccatctgacaacaacaacagcatcaacagcagcagcaacaacaaca
acaaatactcagcaaaacaaaaagagaatgcaattttagaataagaaaca
ccagtgcaaaaatgtttaaaataacttcaagaaggcatgtacacatatat
gtgtgagttttgttcatgtatatttctctctataaatacattaaaattaa
attgttgagcctggtgtgctggcacgtgcctttaaccccagcacttggga
agcagaggaagacagatagatctcttgagttcaatgccacatgggctaca
gagtgagttctaaaataatgtaggtccttacacaagaaacctggtcttta
aaaaaccccaataaatggatgaataaataattagcccacaaacaaataat
aattgtggatttagatactaaatatttggcagttataaagcatcaattca
gttgttaatcatccatcagatggattcatggattcttatcttttggttag
atcatgtacttctgac
gaattcctgctgcctcctgagagaacccaatattggacccctccaagcta
gctctggcctcaaagaaagagtgtcagctaaactagcacaggtggggatc
tctcccagtgtctcttgtttcctaaacttcttcagtggaagatcccaaag
cgtctctatttgatgtatcacctcggacagacgactctaaccactggcta
agaggatgttcatactgaagccatgcaacaattagtccaggttcatcaac
aaataaattcaccaaataagcacctatacttccaggtaccaaagacatga
aacgtctccaaaagagggatggcaagactttacacgtgtcaggaggacct
aagtctcaacttcttttaatcctggtaaatattacaggctggataaaggc
tttttcatgtaaaatgtgaaagactccaggcaggaggactgggctagagt
aatcccagacatgaaagatagcttccagggtcttactgaaggctgtgtag
aaggagatactatcaatgtgaagaatacatttttgtttgtttttgagaca
gggtttctctgcatagccctggctatgctggaactcactctatagaccag
actggcctggaatctggagatccccctgcctctgcctctgagtgctggaa
cgaaaggggtgtgccaccactgcctgatgaatacttttgttttcaatgtg
atgcatccatgacatattgttcttcttgcctcactgaagtccatactagc
agatcaagacttggtaaaaaaattcatcctgcatttggatgtttgatatt
taaaagtaatatatgcagtggcttagacagatactgtttctgtaaatcag
gaagatgggcagtactttagctctctgggttttgcttatttttgtttgta
atcaactgaggcattgaactgctgacagttcatttcgagcaattccaacc
ctctgatttattctatagtctttactgtgtgttttaactaagacaaaatt
tgcatctttgaaaataaaataatgaaatggcaagacttatgtaggaaact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87053821_87054792
seq2: B6Ng01-032F12.b_204_1163

seq1  TGGCTGTCTCTGCTAGGTAGTGCCACTGCTGCTGATTCGTGTTTGTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTCTGCTAGGTAGTGCCACTGCTGCTGATTCGTGTTTGTTATA  50

seq1  CTGACTCTACCAAACAGGACTGCTGGTGTGTCCATGAAGTGTCTGCGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTACCAAACAGGACTGCTGGTGTGTCCATGAAGTGTCTGCGAGT  100

seq1  GGATTGAGTTGCTGCTGCTGACTCCTGTAAACTGAACTGTCAATATCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGTTGCTGCTGCTGACTCCTGTAAACTGAACTGTCAATATCTTG  150

seq1  ACAATGCAGATGGGATTTGTTCCAAAGAACCATTTCTAAACAGGTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGATGGGATTTGTTCCAAAGAACCATTTCTAAACAGGTCCACT  200

seq1  TCCCCTGTATCCTTTCTTTTCTACTACCTCTGGTAAGTGGTGAGCTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTATCCTTTCTTTTCTACTACCTCTGGTAAGTGGTGAGCTAGAA  250

seq1  GGGAGGTTAAAGCATTTAAGAACCATCATTAAAAATGGGCTTTGAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTAAAGCATTTAAGAACCATCATTAAAAATGGGCTTTGAAAAAT  300

seq1  TAAAGTTACAGAGCATCACACAAAACCAGGCACAATAGCACATACCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACAGAGCATCACACAAAACCAGGCACAATAGCACATACCTGTT  350

seq1  AACCAAGCACTCAGAAAATGGAGGCAGGAGAATTAGAAGCTCAAATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCACTCAGAAAATGGAGGCAGGAGAATTAGAAGCTCAAATTTAC  400

seq1  GCTTGGCTATATCACAAGTTTGAGGGTCATCCTAGGCTATGGTGATGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTATATCACAAGTTTGAGGGTCATCCTAGGCTATGGTGATGGCC  450

seq1  ATCTGACAACAACAACAGCATCAACAGCAGCAGCAACAACAACAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAACAACAACAGCATCAACAGCAGCAGCAACAACAACAACAAAT  500

seq1  ACTCAGCAAAACAAAAAGAGAATGCAATTTTAGAATAAGAAACACCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAAACAAAAAGAGAATGCAATTTTAGAATAAGAAACACCAGTG  550

seq1  CAAAAATGTTTAAAATAACTTCAAGAAGGCATGTACACATATATGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTTTAAAATAACTTCAAGAAGGCATGTACACATATATGTGTGA  600

seq1  GTTTTGTTCATGTATATTTCTCTCTATAAATACATTAAAATTAAATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCATGTATATTTCTCTCTATAAATACATTAAAATTAAATTGTT  650

seq1  GAGCCTGGTGTGCTGGCACGTGCCTTTAACCCCAGCACTTGGGAAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGTGTGCTGGCACGTGCCTTTAACCCCAGCACTTGGGAAGCAGA  700

seq1  GGAAGACAGATAGATCTC-TGAGTTCAATGCCAACATGGCCTACAGAGTG  749
      |||||||||||||||||| ||||||||||||| |||||| ||||||||||
seq2  GGAAGACAGATAGATCTCTTGAGTTCAATGCC-ACATGGGCTACAGAGTG  749

seq1  AGTTCTAAAAT-ATGTAGGGCCTTACACAAAGAAAACCTGTCTTTAAAAA  798
      ||||||||||| ||||||| |||||||| |||||| |  |||||||||||
seq2  AGTTCTAAAATAATGTAGGTCCTTACAC-AAGAAACCTGGTCTTTAAAAA  798

seq1  AAACCCCAAATAAATGAATGAATAAATAAATAGCCCACAAACAAATAAAT  848
      |   ||| |||||||| |||||||||||| ||||||||||||||||||  
seq2  A---CCCCAATAAATGGATGAATAAATAATTAGCCCACAAACAAATAA--  843

seq1  AAATTGTTGAATTTAGATACTAAAATAATGTGCAGTTTATAAAGCAATCA  898
       ||||| || ||||||||||| ||||| |  |||| ||||||||| ||||
seq2  TAATTG-TGGATTTAGATACT-AAATATTTGGCAG-TTATAAAGC-ATCA  889

seq1  ATTCAGTTGTTAAATCATCCATCAGTATGAATTCAT-GATTCATAATCCT  947
      ||||||||||| ||||||||||||| ||| |||||| ||||| | ||| |
seq2  ATTCAGTTGTT-AATCATCCATCAG-ATGGATTCATGGATTC-TTATCTT  936

seq1  TTGGTTAGTATCAGTTACTTCTGAC  972
      |||||||| ||||  ||||||||||
seq2  TTGGTTAG-ATCATGTACTTCTGAC  960

seq1: chr3_87196281_87197359
seq2: B6Ng01-032F12.g_65_1114 (reverse)

seq1  AGTTTCCTACATTAAGTCTTTGCCTTTTCATTTTTATTTTATTTTTCAAA  50
      ||||||||||| |||||| ||||| |||||   |||||||| ||||||||
seq2  AGTTTCCTACA-TAAGTC-TTGCCATTTCA---TTATTTTA-TTTTCAAA  44

seq1  GATGCAAATTTTGTCTTTTAGATTAAAAAAACAACAACAGTAAAAGACTT  100
      |||||||||||||||||    | | |||| ||    ||||| |||||| |
seq2  GATGCAAATTTTGTCTT----AGTTAAAACAC----ACAGT-AAAGAC-T  84

seq1  ATAAGAATAAATCAGAGGGTTTGGGAATTTGGCTCTGAAATTGAACTTGT  150
      || ||||||||||||||||||  ||||||  |||| |||| ||||| |||
seq2  AT-AGAATAAATCAGAGGGTT--GGAATT--GCTC-GAAA-TGAAC-TGT  126

seq1  CAGCAGGTTCAATGCCTCAGTTTGATCTACAAAACAAAAATAAGCAAAAC  200
      ||||| |||||||||||||| ||||| ||| |||||||||||||||||||
seq2  CAGCA-GTTCAATGCCTCAG-TTGAT-TAC-AAACAAAAATAAGCAAAAC  172

seq1  CCAGAGAGCTAAAGTACTTGCCCATCTTCCTGATTTACAGAAACAGTATC  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGAGAGCTAAAGTAC-TGCCCATCTTCCTGATTTACAGAAACAGTATC  221

seq1  TGTCTAAGCCACTGCATATATTACTTTTAAATATCAAACATCCAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAGCCACTGCATATATTACTTTTAAATATCAAACATCCAAATGCA  271

seq1  GGATGAATTTTTTTACCAAGTCTTGATCTGCTAGTATGGACTTCAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTTTTTTACCAAGTCTTGATCTGCTAGTATGGACTTCAGTGAG  321

seq1  GCAAGAAGAACAATATGTCATGGATGCATCACATTGAAAACAAAAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAACAATATGTCATGGATGCATCACATTGAAAACAAAAGTATT  371

seq1  CATCAGGCAGTGGTGGCACACCCCTTTCGTTCCAGCACTCAGAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCAGTGGTGGCACACCCCTTTCGTTCCAGCACTCAGAGGCAGAG  421

seq1  GCAGGGGGATCTCCAGATTCCAGGCCAGTCTGGTCTATAGAGTGAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGATCTCCAGATTCCAGGCCAGTCTGGTCTATAGAGTGAGTTCC  471

seq1  AGCATAGCCAGGGCTATGCAGAGAAACCCTGTCTCAAAAACAAACAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCCAGGGCTATGCAGAGAAACCCTGTCTCAAAAACAAACAAAAA  521

seq1  TGTATTCTTCACATTGATAGTATCTCCTTCTACACAGCCTTCAGTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTCACATTGATAGTATCTCCTTCTACACAGCCTTCAGTAAGAC  571

seq1  CCTGGAAGCTATCTTTCATGTCTGGGATTACTCTAGCCCAGTCCTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGCTATCTTTCATGTCTGGGATTACTCTAGCCCAGTCCTCCTGC  621

seq1  CTGGAGTCTTTCACATTTTACATGAAAAAGCCTTTATCCAGCCTGTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCTTTCACATTTTACATGAAAAAGCCTTTATCCAGCCTGTAATA  671

seq1  TTTACCAGGATTAAAAGAAGTTGAGACTTAGGTCCTCCTGACACGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGGATTAAAAGAAGTTGAGACTTAGGTCCTCCTGACACGTGTAA  721

seq1  AGTCTTGCCATCCCTCTTTTGGAGACGTTTCATGTCTTTGGTACCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCCATCCCTCTTTTGGAGACGTTTCATGTCTTTGGTACCTGGAA  771

seq1  GTATAGGTGCTTATTTGGTGAATTTATTTGTTGATGAACCTGGACTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTGCTTATTTGGTGAATTTATTTGTTGATGAACCTGGACTAATT  821

seq1  GTTGCATGGCTTCAGTATGAACATCCTCTTAGCCAGTGGTTAGAGTCGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATGGCTTCAGTATGAACATCCTCTTAGCCAGTGGTTAGAGTCGTC  871

seq1  TGTCCGAGGTGATACATCAAATAGAGACGCTTTGGGATCTTCCACTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGAGGTGATACATCAAATAGAGACGCTTTGGGATCTTCCACTGAAG  921

seq1  AAGTTTAGGAAACAAGAGACACTGGGAGAGATCCCCACCTGTGCTAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGGAAACAAGAGACACTGGGAGAGATCCCCACCTGTGCTAGTTT  971

seq1  AGCTGACACTCTTTCTTTGAGGCCAGAGCTAGCTTGGAGGGGTCCAATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACTCTTTCTTTGAGGCCAGAGCTAGCTTGGAGGGGTCCAATAT  1021

seq1  TGGGTTCTCTCAGGAGGCAGCAGGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TGGGTTCTCTCAGGAGGCAGCAGGAATTC  1050