BAC Information

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BAC

Clone NameB6Ng01-032L04
Chromosome3 (Build37)Y (Build37)
Map Location 34,261,142 - 34,261,901573,321 - 573,358
singlet/doubletsingletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032L04.bB6Ng01-032L04.g
ACCDH861952DH861953
length1,081500
definitionDH861952|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L04, 5' end.DH861953|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,261,142 - 34,261,901)(573,321 - 573,358)
sequence
gaattctgtgctttaactcttcttctgcatctgtctttaacagtgagata
tgttttcaggagatggcagacagttggatctggttttttaatctactcat
gcagtcagtcggtgtctctttataatgagatgagatcacttactttgagt
ttgctactgagaggccttttaatacctgtgactttgcttgttgttttgta
cttttattaacactttcttcccctcttctcagtgtttgaggtctgctggt
tttccgacttgggcatgatggagtcctccttgctctcctttgtgtgtcta
tgcctctcaagagatttattcttctctatgttccttgtgatcgacagtct
ctctctggaaagtgagcctttaagtatcctggcttggtggtcataactta
gtttgtatttatctttaaatgtccttatttccctgccaatttccgaagat
agctttgatgggtattgcaatcttggttggcagttatttgtgttcagggc
ttgaaatagtgttccctgcctttgtagcttttagattgctcacgagagag
acctgatattattttaatgtttctgcctttgtaggtgagttagcattttc
cccttaaagcttctgacattatttctttgctttatgttttgatgtcttgc
acataatatgccatagaacattcttgtccgttcatgtatatttggggatc
taaatgccttttgagtttagatggccatttctttatctagatttggaaat
tgttcaattattttcagagaatagatgctattggttctttgttgtatcct
gtgtgttcttagacttgatctcttgattatatgtagaatttgcacatcat
tttttgccctttttttcaaacaatactctatactcagttcttaaatcctt
atcaatattaacagtgctggatatttattagtcaattaataaattacggg
ttggtataaatatgggattactgtttaaatgaatacataataatgaactc
acttttcatttactgatgtcttttcttgattatggctaataaataaggaa
tttaggtttagtggtaaagaataatcagttg
gaattcatgaaattcctaggcaaatggatggacctggagggcatcatcct
gagtgaggtaaccaatcacaaaagaactcacacaatatgtactcactgat
tagcctagaaacttagaatacccaagatataagatacaatttgctaaaca
catgaaactcaagaagaatgaagaccaaagtgtggacactttgccccttc
ttagaattgggaataaaacaccctggaaggagttacagagacaaagtttg
gagctgagatgaaaggatggaccatctagagactgccatatccggggatc
catcccataatcagcttccaaacgctgacaccattgcatatactagcaag
attttgctgaaaggacccagatatagctgtctcttgtgagactatgccag
ggcctaacaaacacagaagtggatgctcacagtcagctattagatggatc
acagggcccccaatggaggagctagagaaagtaaccaaggagctaaaggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34261142_34261901
seq2: B6Ng01-032L04.b_373_1124

seq1  GTTCCTTGTGATCGACAGTCTCTCTCTGGAAAGTGAGCCTTTAAGTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGTGATCGACAGTCTCTCTCTGGAAAGTGAGCCTTTAAGTATCC  50

seq1  TGGCTTGGTGGTCATAACTTAGTTTGTATTTATCTTTAAATGTCCTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGTGGTCATAACTTAGTTTGTATTTATCTTTAAATGTCCTTATT  100

seq1  TCCCTGCCAATTTCCGAAGATAGCTTTGATGGGTATTGCAATCTTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCAATTTCCGAAGATAGCTTTGATGGGTATTGCAATCTTGGTTG  150

seq1  GCAGTTATTTGTGTTCAGGGCTTGAAATAGTGTTCCCTGCCTTTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATTTGTGTTCAGGGCTTGAAATAGTGTTCCCTGCCTTTGTAGCT  200

seq1  TTTAGATTGCTCACGAGAGAGACCTGATATTATTTTAATGTTTCTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGCTCACGAGAGAGACCTGATATTATTTTAATGTTTCTGCCTT  250

seq1  TGTAGGTGAGTTAGCATTTTCCCCTTAAAGCTTCTGACATTATTTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGAGTTAGCATTTTCCCCTTAAAGCTTCTGACATTATTTCTTTG  300

seq1  CTTTATGTTTTGATGTCTTGCACATAATATGCCATAGAACATTCTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTTGATGTCTTGCACATAATATGCCATAGAACATTCTTGTCC  350

seq1  GTTCATGTATATTTGGGGATCTAAATGCCTTTTGAGTTTAGATGGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTATATTTGGGGATCTAAATGCCTTTTGAGTTTAGATGGCCATT  400

seq1  TCTTTATCTAGATTTGGAAATTGTTCAATTA-TTTCAGAGAATAGATGCT  449
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTTTATCTAGATTTGGAAATTGTTCAATTATTTTCAGAGAATAGATGCT  450

seq1  ATTGGTTCTTTGTTGTATCCTGTGTGTTCTTAGACTTGATCTCTTGATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCTTTGTTGTATCCTGTGTGTTCTTAGACTTGATCTCTTGATTA  500

seq1  TATGTAGAATTTGCACATCATTTTTTGCCCTTTTTTTCAAACAATACTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAATTTGCACATCATTTTTTGCCCTTTTTTTCAAACAATACTCT  550

seq1  ATACTCAGTTCTTAAATCCTTATCAATATTAACAGTGCTGGATATTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGTTCTTAAATCCTTATCAATATTAACAGTGCTGGATATTTATT  600

seq1  AGTCAATTAATAAATTACGGGTTGGTATAAAATATGGGATTACTGTTTAA  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCAATTAATAAATTACGGGTTGGTAT-AAATATGGGATTACTGTTTAA  649

seq1  ATGAATAACATAATAAATGAACTCACTTTTCATTTACTGATGTCCTTTCT  699
      |||||| ||||||| ||||||||||||||||||||||||||||| |||||
seq2  ATGAAT-ACATAAT-AATGAACTCACTTTTCATTTACTGATGTCTTTTCT  697

seq1  TGATTTATGGCTAAATAAAATAAGATATTGTTAGTTTTAGGTTGTAAAGA  749
      ||| ||||||||||   |||||||  ||  |||| |||| || |||||||
seq2  TGA-TTATGGCTAA--TAAATAAGGAAT--TTAGGTTTA-GTGGTAAAGA  741

seq1  ATAATCAGTTG  760
      |||||||||||
seq2  ATAATCAGTTG  752

seq1: chrY_573321_573358
seq2: B6Ng01-032L04.g_528_565

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||||||||||||||||||||| ||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTAACCAAGGAGCTAAAGGG  38